Definition | Methylibium petroleiphilum PM1 chromosome, complete genome. |
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Accession | NC_008825 |
Length | 4,044,195 |
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The map label for this gene is 124265496
Identifier: 124265496
GI number: 124265496
Start: 328124
End: 328906
Strand: Direct
Name: 124265496
Synonym: Mpe_A0303
Alternate gene names: NA
Gene position: 328124-328906 (Clockwise)
Preceding gene: 124265495
Following gene: 124265497
Centisome position: 8.11
GC content: 71.9
Gene sequence:
>783_bases ATGGTCTGGGATGAACGACAGGCCGCGATGCTGGCGGAGATGGGCATCCGTGTGTGGCAAGCGCCTGCGGCTGCGGCTTC GCCCGTGATCGATGCGAAGGTCGAGGCAGCGGTCAGCCCGGTCGCCGCCGCCTCGCCCGCCCCGGTGGTACCGCGGGTCG CCGTCGCACGCGGTGCCCGCCCCGAAGATGTCGAGGCGATGGACTGGCCGACCCTGCGTGCCGCCGTCGCCGGTTGCACC GCCTGCGGGCTGTGCCGCGGTCGCACGAACACGGTGTTCGGCGTCGGGCACACGCAGGCGCACTGGATGGTCGTCGGCGA GGCGCCGGGCGAACAGGAAGACCGCCTGGGCGAGCCCTTCGTCGGCAAGGCCGGGCAGTTGCTCGACCACATGCTGCAGG CCCTGGGCCTGACGCGCCGGGCCGAAGGCGAGGGACTGCAGCCGGCGCAGCAGGTCTACATCGCCAACGTGCTGAAGTGC CGGCCGCCGATGAACCGCAATCCGCAGCCCGAGGAAGTGGCGCAGTGCGAGCCCTACCTGGCCCGCCAGGTGGCGCTGCT GCAGCCGCGGCTGATTCTCGCGATGGGCCGCTTCGCGGTGCAATCGCTGCTGCAGACCGGTGAACCGATCGGCCGCCTGC GGGGCCGGATCCACCAGTACCAGGGGGTGCCCGCCATCGTGACCTATCACCCCGCCTACCTGCTGCGCAACCCGGCCGAC AAGGCGAAGGCCTGGGACGACCTCTGTCTTGCGCGCGAGGTGATGCGCGGCGCGCGCCCCTGA
Upstream 100 bases:
>100_bases GGCTTCCGCAATGTCGGCCTGCGCCGTGGCTACTACCCGGCCCGCGGGCGGGCGCGCGAGGACGCGGTGGTGATGAGCCT GCAGATTCCAGAGGCGGTGC
Downstream 100 bases:
>100_bases CGCCGGCACAGGCTGCCGCAGGGTTCGGCCGAATCGACCGGCTGCCCCGGCGCGCCTACCCTCGGCCATGGGCGCCGTTG TGCCAAGGCTCACCGAGGAC
Product: putative DNA polymerase-like protein
Products: diphosphate; DNAn+1
Alternate protein names: Uracil-DNA Glycosylase; Phage SPO1 DNA Polymerase-Like Protein; DNA Polymerase; DNA Polymerase Bacteriophage-Type; Uracil DNA Glycosylase Superfamily Protein; DNA-Directed DNA Polymerase; DNA Polymerase-Related Protein Bacteriophage-Type; DNA Glycosylase; Uracil-DNA Glycosylase Family 4 Protein; Phage Spo1 DNA Polymerase-Related Protein; DNA Polymerase-Related Protein; Bacteriophage-Related DNA Polymerase; N-Terminus Of Bacteriophage-Type DNA Polymerase; Phage DNA Polymerase; Phage SPO1 DNA Polymerase Domain-Containing Protein; DNA Polymerase Domain-Containing Protein; Phage Related DNA Polymerase; Uracil-DNA Glycosylase C-Terminal; Phage SpO1 DNA Polymerase-Related Protein; Arginine Biosynthesis Bifunctional Protein ArgJ; Bacteriophage-Type DNA Polymerase; DNA Polymerase Related Protein; Uracil DNA Glycosylase; Phage DNA Polymerase-Related Protein; DNA-Directed DNA Polymerase Bacteriophage-Type; Uracil-DNA Glycosylase Phage-Related Protein; Phage Shock Protein E; C-Terminal Part Of DNA Polymerase Bacteriophage-Type; Phage Spo1 DNA Polymerase Domain Protein; Uracil-DNA Glycosylase C-Terminal Domain Protein; Uracil-DNA Glycosylase-Like Protein; Uracil-DNA Glycosylase-Related Protein; Bacteriophage-Type DNA Polymerase N-Terminal Domain Protein; N-Terminus Of Phage SPO1 DNA Polymerase
Number of amino acids: Translated: 260; Mature: 260
Protein sequence:
>260_residues MVWDERQAAMLAEMGIRVWQAPAAAASPVIDAKVEAAVSPVAAASPAPVVPRVAVARGARPEDVEAMDWPTLRAAVAGCT ACGLCRGRTNTVFGVGHTQAHWMVVGEAPGEQEDRLGEPFVGKAGQLLDHMLQALGLTRRAEGEGLQPAQQVYIANVLKC RPPMNRNPQPEEVAQCEPYLARQVALLQPRLILAMGRFAVQSLLQTGEPIGRLRGRIHQYQGVPAIVTYHPAYLLRNPAD KAKAWDDLCLAREVMRGARP
Sequences:
>Translated_260_residues MVWDERQAAMLAEMGIRVWQAPAAAASPVIDAKVEAAVSPVAAASPAPVVPRVAVARGARPEDVEAMDWPTLRAAVAGCT ACGLCRGRTNTVFGVGHTQAHWMVVGEAPGEQEDRLGEPFVGKAGQLLDHMLQALGLTRRAEGEGLQPAQQVYIANVLKC RPPMNRNPQPEEVAQCEPYLARQVALLQPRLILAMGRFAVQSLLQTGEPIGRLRGRIHQYQGVPAIVTYHPAYLLRNPAD KAKAWDDLCLAREVMRGARP >Mature_260_residues MVWDERQAAMLAEMGIRVWQAPAAAASPVIDAKVEAAVSPVAAASPAPVVPRVAVARGARPEDVEAMDWPTLRAAVAGCT ACGLCRGRTNTVFGVGHTQAHWMVVGEAPGEQEDRLGEPFVGKAGQLLDHMLQALGLTRRAEGEGLQPAQQVYIANVLKC RPPMNRNPQPEEVAQCEPYLARQVALLQPRLILAMGRFAVQSLLQTGEPIGRLRGRIHQYQGVPAIVTYHPAYLLRNPAD KAKAWDDLCLAREVMRGARP
Specific function: Unknown
COG id: COG1573
COG function: function code L; Uracil-DNA glycosylase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: 2.7.7.7
Molecular weight: Translated: 28126; Mature: 28126
Theoretical pI: Translated: 8.38; Mature: 8.38
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 5.8 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 5.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVWDERQAAMLAEMGIRVWQAPAAAASPVIDAKVEAAVSPVAAASPAPVVPRVAVARGAR CCCCHHHHHHHHHHHHHHHCCCCHHCCCHHHHHHHHHHCCHHCCCCCCCCCHHHHHCCCC PEDVEAMDWPTLRAAVAGCTACGLCRGRTNTVFGVGHTQAHWMVVGEAPGEQEDRLGEPF CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEECCCCCEEEEEEECCCCCHHHHCCCCC VGKAGQLLDHMLQALGLTRRAEGEGLQPAQQVYIANVLKCRPPMNRNPQPEEVAQCEPYL CCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCHHH ARQVALLQPRLILAMGRFAVQSLLQTGEPIGRLRGRIHQYQGVPAIVTYHPAYLLRNPAD HHHHHHHCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEECCHHHHCCCHH KAKAWDDLCLAREVMRGARP HHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure MVWDERQAAMLAEMGIRVWQAPAAAASPVIDAKVEAAVSPVAAASPAPVVPRVAVARGAR CCCCHHHHHHHHHHHHHHHCCCCHHCCCHHHHHHHHHHCCHHCCCCCCCCCHHHHHCCCC PEDVEAMDWPTLRAAVAGCTACGLCRGRTNTVFGVGHTQAHWMVVGEAPGEQEDRLGEPF CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEECCCCCEEEEEEECCCCCHHHHCCCCC VGKAGQLLDHMLQALGLTRRAEGEGLQPAQQVYIANVLKCRPPMNRNPQPEEVAQCEPYL CCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCHHH ARQVALLQPRLILAMGRFAVQSLLQTGEPIGRLRGRIHQYQGVPAIVTYHPAYLLRNPAD HHHHHHHCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEECCHHHHCCCHH KAKAWDDLCLAREVMRGARP HHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: deoxynucleoside triphosphate; DNAn
Specific reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1)
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA