| Definition | Prochlorococcus marinus str. MIT 9303, complete genome. |
|---|---|
| Accession | NC_008820 |
| Length | 2,682,675 |
Click here to switch to the map view.
The map label for this gene is nrdJ [H]
Identifier: 124023121
GI number: 124023121
Start: 1212006
End: 1214420
Strand: Reverse
Name: nrdJ [H]
Synonym: P9303_14171
Alternate gene names: 124023121
Gene position: 1214420-1212006 (Counterclockwise)
Preceding gene: 124023124
Following gene: 124023120
Centisome position: 45.27
GC content: 52.13
Gene sequence:
>2415_bases ATGGTGTTACTAAAGCTTGCAGACACCATGAGTGGCGGTAGCGTTCCCATACTTATCGGCATAAGCCAACCTATGACCCT GACTTCGAGCAGACCTGAGATAGCAATGACAGCCTTAGAAGCCAGCGGACAACGTGGTGATTTCCCTGCCACGGCTCCAG CCGCTAACCCGGTTTTTTATCGCACTTATAGCCGCCGCACCTCGTCGGGACGAGAAAGCTGGAACGAAGTGAGCACACGC AACCTCCAAGGACTGCAGCAACTCGGCAAACTCAGAGCTGAGGAGGTAGCGCTGATGTCGCGCATGCAAGCCGAGAAAAA GGCTCTCCCCTCTGGACGCTGGCTATGGATCGGTGGAACGGATTGGATCGAAAAAGCAGAGAATTTCTCAGGTGCCTACA ACTGCACATCCACCAACCTGGTGGACTGGGAAGCCTTTGGTCTAATGATGGACCTTGCGATGATGGGCTGCGGAACTGGT GCTGTCATTGAACCTCACTTGATTGATCAGCTTCCGTTGGTTCGCAACCCCATCAAAATCGTTGGCGTTACAGATATTGG CCTAACAGCAGCACATCAAAGACAAGAGCAGACAACGCACAGCATTGAAAACGACAACGTCTTGATCAAGGTTGGAGACA CACGTCGTGGCTGGGTTGACAGCTATCAGTTATTACTCGAACTATGCAGCGATGAACGCTTCGCTGGACAAACCATCAAG GTAAGTATTGACCTTTCAGACGTAAGGCCAGTAGGCGAGACCCTCAAGGGCTTTGGTGGAATGGCCAATCCAGTGAAGCT GAAGGATCTTTATACCCGTGTCGCTCGACTGCTTGGTAAAGCAGTCGGCCGTCGCCTCACATCAGTGGAGTGTTGCCTCC TAATCGACGAAGCCGCAGTAACGATCGTTGCAGGCAACATCCGCCGTAGTGCTGGCATGCGTCAGTTTTCGGCGGAAGAT CTTGCAGCTGCAGATGCCAAAGAAAATCTCTGGCAACAAGATGCCGACGGTAATTGGCGCATCGATCCCGAAAAAGATGC GCTACGCATGGCTAATCACACCAGGGTTTACCACAACAGGCCGAGCCGATCGATTGTGGTTGAGGCCGTAAGGAAACAAT TCCATTCTGGGGAGGGTGCCATTCAATTCGCACCAGAGGCCATTGCACGCTCCAATGCAGACCTGCTCACCACAAAAGAA TTACGCCAGGAATTCATTGGGATCTACTGCGATCAGGGAAGAGACGAAGCAGGTCGCTGGTTACAGACCAACCACGGTCC AATCGATGCCAGCGAACTAAAGCATCGACTAGGCCGCTATGGCCTAAACCCATGCGGGGAAATTCTTGGAGCCGACTTTC ACTGCAATTTGGCCGAGATCCATCTCAACCAAATCGACCCTTGTGATGAAGACGGTCAAGCTGATGCTTTCAAAGCTGCT GCTCTATCGGTTGCCTGCCTGCTAAACCATCGCTTTGAAGTTCCCAGATATCGCCAAAGCCGTGCCTGGGATCCCATTGT GGGTGTGAGCTTTACTGGTTTATTTGACTTCTTCGTCCATGCATTCGGCACTGCCTGGCTCAGATGGTGGGAAAACGGGC GACCTGACACAGAAGAAGGTCGCCATTTCAAGCAAAAGGAAGCATCCTTTTTGAGCCGTTGGAAAAAAATAGTCAACGAA ACGGTATGGGACTATTGCGATCGCCACGAGTTGCGTCGCCCTAGCCGTTGCACCACAGTTCAACCAGCCGGAACGAAAAG TCTGCTTACAGGAGCAGCACCGGGATGGCATCCTCCTAAAGCCCAGCGTTTCATTCGTCGGATTACCTTCCGAAAGAATG ATCCAGTGGCGATGGCATGTATGGACTACGGATACACCGTTGTGCCGTCTCAATCTGATAAAGATGAGCAGGGTCGCTTG CTGGATGATCCATTTGATCCACGCTGCAGCGAATGGTTGGTTGAAATTCCCACAGAAGTCAGCTGGGCCAATCTTCCTGG TGCCGATGCTGTCAATATCAATAACTTCTCAGCACTGGCTCAATTTGATTTCTACATGCAAGTGCAAAGCCATTACACGG CCCACAACACTTCAGCGACGATCGAACTGCGTGAGGATGAGATAGAGGGTCTGGGAGAAGCGTTGCATCAAGCAATTGAC AACAGTGAGGGCTACATCTCTGCTGCACTGCTTGCTCGCTTCGATGCCAACAATGCCACCTTCCCTCGCTTGCCGTTTGA GCCGATCGATGCAACCACATTCGAGCGCCTGCAAGCAGAGGTGGTTAATCGAAGGGTGAGGAGCAACTTCTTCGAGGCTC TTCACTCCTATGACCAAGGTGAACTGATGGAGGCGGGGCCAGCTGGATGTGACTCAGACAAATGCCTACTTCCACTGGCC AAACCTGGGAGCTGA
Upstream 100 bases:
>100_bases AGGCCTTGGCCTGAAGCGGATCATCCATTAACTCCGGCTCAGGCAAACGCTTCACAAGATCTCAATCAGATTTCTCACTA GTCTCAGCCAGGCACTGTCG
Downstream 100 bases:
>100_bases CTCAAACGCTGATGGAATCCGTCCTGGATGGTTCTCGAGGGCGGATCTCATGGCAAGGGGCATCAAATTCTGACGAAACC ACATCAATTGATTGGTAAAG
Product: ribonucleotide reductase (class II)
Products: NA
Alternate protein names: RTPR [H]
Number of amino acids: Translated: 804; Mature: 804
Protein sequence:
>804_residues MVLLKLADTMSGGSVPILIGISQPMTLTSSRPEIAMTALEASGQRGDFPATAPAANPVFYRTYSRRTSSGRESWNEVSTR NLQGLQQLGKLRAEEVALMSRMQAEKKALPSGRWLWIGGTDWIEKAENFSGAYNCTSTNLVDWEAFGLMMDLAMMGCGTG AVIEPHLIDQLPLVRNPIKIVGVTDIGLTAAHQRQEQTTHSIENDNVLIKVGDTRRGWVDSYQLLLELCSDERFAGQTIK VSIDLSDVRPVGETLKGFGGMANPVKLKDLYTRVARLLGKAVGRRLTSVECCLLIDEAAVTIVAGNIRRSAGMRQFSAED LAAADAKENLWQQDADGNWRIDPEKDALRMANHTRVYHNRPSRSIVVEAVRKQFHSGEGAIQFAPEAIARSNADLLTTKE LRQEFIGIYCDQGRDEAGRWLQTNHGPIDASELKHRLGRYGLNPCGEILGADFHCNLAEIHLNQIDPCDEDGQADAFKAA ALSVACLLNHRFEVPRYRQSRAWDPIVGVSFTGLFDFFVHAFGTAWLRWWENGRPDTEEGRHFKQKEASFLSRWKKIVNE TVWDYCDRHELRRPSRCTTVQPAGTKSLLTGAAPGWHPPKAQRFIRRITFRKNDPVAMACMDYGYTVVPSQSDKDEQGRL LDDPFDPRCSEWLVEIPTEVSWANLPGADAVNINNFSALAQFDFYMQVQSHYTAHNTSATIELREDEIEGLGEALHQAID NSEGYISAALLARFDANNATFPRLPFEPIDATTFERLQAEVVNRRVRSNFFEALHSYDQGELMEAGPAGCDSDKCLLPLA KPGS
Sequences:
>Translated_804_residues MVLLKLADTMSGGSVPILIGISQPMTLTSSRPEIAMTALEASGQRGDFPATAPAANPVFYRTYSRRTSSGRESWNEVSTR NLQGLQQLGKLRAEEVALMSRMQAEKKALPSGRWLWIGGTDWIEKAENFSGAYNCTSTNLVDWEAFGLMMDLAMMGCGTG AVIEPHLIDQLPLVRNPIKIVGVTDIGLTAAHQRQEQTTHSIENDNVLIKVGDTRRGWVDSYQLLLELCSDERFAGQTIK VSIDLSDVRPVGETLKGFGGMANPVKLKDLYTRVARLLGKAVGRRLTSVECCLLIDEAAVTIVAGNIRRSAGMRQFSAED LAAADAKENLWQQDADGNWRIDPEKDALRMANHTRVYHNRPSRSIVVEAVRKQFHSGEGAIQFAPEAIARSNADLLTTKE LRQEFIGIYCDQGRDEAGRWLQTNHGPIDASELKHRLGRYGLNPCGEILGADFHCNLAEIHLNQIDPCDEDGQADAFKAA ALSVACLLNHRFEVPRYRQSRAWDPIVGVSFTGLFDFFVHAFGTAWLRWWENGRPDTEEGRHFKQKEASFLSRWKKIVNE TVWDYCDRHELRRPSRCTTVQPAGTKSLLTGAAPGWHPPKAQRFIRRITFRKNDPVAMACMDYGYTVVPSQSDKDEQGRL LDDPFDPRCSEWLVEIPTEVSWANLPGADAVNINNFSALAQFDFYMQVQSHYTAHNTSATIELREDEIEGLGEALHQAID NSEGYISAALLARFDANNATFPRLPFEPIDATTFERLQAEVVNRRVRSNFFEALHSYDQGELMEAGPAGCDSDKCLLPLA KPGS >Mature_804_residues MVLLKLADTMSGGSVPILIGISQPMTLTSSRPEIAMTALEASGQRGDFPATAPAANPVFYRTYSRRTSSGRESWNEVSTR NLQGLQQLGKLRAEEVALMSRMQAEKKALPSGRWLWIGGTDWIEKAENFSGAYNCTSTNLVDWEAFGLMMDLAMMGCGTG AVIEPHLIDQLPLVRNPIKIVGVTDIGLTAAHQRQEQTTHSIENDNVLIKVGDTRRGWVDSYQLLLELCSDERFAGQTIK VSIDLSDVRPVGETLKGFGGMANPVKLKDLYTRVARLLGKAVGRRLTSVECCLLIDEAAVTIVAGNIRRSAGMRQFSAED LAAADAKENLWQQDADGNWRIDPEKDALRMANHTRVYHNRPSRSIVVEAVRKQFHSGEGAIQFAPEAIARSNADLLTTKE LRQEFIGIYCDQGRDEAGRWLQTNHGPIDASELKHRLGRYGLNPCGEILGADFHCNLAEIHLNQIDPCDEDGQADAFKAA ALSVACLLNHRFEVPRYRQSRAWDPIVGVSFTGLFDFFVHAFGTAWLRWWENGRPDTEEGRHFKQKEASFLSRWKKIVNE TVWDYCDRHELRRPSRCTTVQPAGTKSLLTGAAPGWHPPKAQRFIRRITFRKNDPVAMACMDYGYTVVPSQSDKDEQGRL LDDPFDPRCSEWLVEIPTEVSWANLPGADAVNINNFSALAQFDFYMQVQSHYTAHNTSATIELREDEIEGLGEALHQAID NSEGYISAALLARFDANNATFPRLPFEPIDATTFERLQAEVVNRRVRSNFFEALHSYDQGELMEAGPAGCDSDKCLLPLA KPGS
Specific function: Unknown
COG id: COG1372
COG function: function code L; Intein/homing endonuclease
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class II ribonucleoside-triphosphate reductase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000788 - InterPro: IPR013345 [H]
Pfam domain/function: PF02867 Ribonuc_red_lgC [H]
EC number: =1.17.4.2 [H]
Molecular weight: Translated: 89592; Mature: 89592
Theoretical pI: Translated: 5.85; Mature: 5.85
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVLLKLADTMSGGSVPILIGISQPMTLTSSRPEIAMTALEASGQRGDFPATAPAANPVFY CEEEEEECCCCCCCEEEEEECCCCCEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEE RTYSRRTSSGRESWNEVSTRNLQGLQQLGKLRAEEVALMSRMQAEKKALPSGRWLWIGGT EEHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCC DWIEKAENFSGAYNCTSTNLVDWEAFGLMMDLAMMGCGTGAVIEPHLIDQLPLVRNPIKI HHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEECCHHHHCCCHHCCCEEE VGVTDIGLTAAHQRQEQTTHSIENDNVLIKVGDTRRGWVDSYQLLLELCSDERFAGQTIK EEEECCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEE VSIDLSDVRPVGETLKGFGGMANPVKLKDLYTRVARLLGKAVGRRLTSVECCLLIDEAAV EEEEHHHCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCEE TIVAGNIRRSAGMRQFSAEDLAAADAKENLWQQDADGNWRIDPEKDALRMANHTRVYHNR EEEECCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEECCCHHHHHHHHCCEEECCC PSRSIVVEAVRKQFHSGEGAIQFAPEAIARSNADLLTTKELRQEFIGIYCDQGRDEAGRW CCHHHHHHHHHHHHCCCCCCEEECCHHHHCCCCCCEEHHHHHHHHHEEECCCCCCCCCCC LQTNHGPIDASELKHRLGRYGLNPCGEILGADFHCNLAEIHLNQIDPCDEDGQADAFKAA EECCCCCCCHHHHHHHHHHCCCCHHHHHHCCCCCCCHHEEECCCCCCCCCCCCCHHHHHH ALSVACLLNHRFEVPRYRQSRAWDPIVGVSFTGLFDFFVHAFGTAWLRWWENGRPDTEEG HHHHHHHHHCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH RHFKQKEASFLSRWKKIVNETVWDYCDRHELRRPSRCTTVQPAGTKSLLTGAAPGWHPPK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCCCCCCHH AQRFIRRITFRKNDPVAMACMDYGYTVVPSQSDKDEQGRLLDDPFDPRCSEWLVEIPTEV HHHHHHHHHCCCCCCEEEEEECCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCC SWANLPGADAVNINNFSALAQFDFYMQVQSHYTAHNTSATIELREDEIEGLGEALHQAID CCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHEECCCCEEEEECHHHHHHHHHHHHHHHC NSEGYISAALLARFDANNATFPRLPFEPIDATTFERLQAEVVNRRVRSNFFEALHSYDQG CCCCCEEEHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC ELMEAGPAGCDSDKCLLPLAKPGS CCHHCCCCCCCCCCEEEECCCCCC >Mature Secondary Structure MVLLKLADTMSGGSVPILIGISQPMTLTSSRPEIAMTALEASGQRGDFPATAPAANPVFY CEEEEEECCCCCCCEEEEEECCCCCEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEE RTYSRRTSSGRESWNEVSTRNLQGLQQLGKLRAEEVALMSRMQAEKKALPSGRWLWIGGT EEHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCC DWIEKAENFSGAYNCTSTNLVDWEAFGLMMDLAMMGCGTGAVIEPHLIDQLPLVRNPIKI HHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEECCHHHHCCCHHCCCEEE VGVTDIGLTAAHQRQEQTTHSIENDNVLIKVGDTRRGWVDSYQLLLELCSDERFAGQTIK EEEECCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEE VSIDLSDVRPVGETLKGFGGMANPVKLKDLYTRVARLLGKAVGRRLTSVECCLLIDEAAV EEEEHHHCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCEE TIVAGNIRRSAGMRQFSAEDLAAADAKENLWQQDADGNWRIDPEKDALRMANHTRVYHNR EEEECCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEECCCHHHHHHHHCCEEECCC PSRSIVVEAVRKQFHSGEGAIQFAPEAIARSNADLLTTKELRQEFIGIYCDQGRDEAGRW CCHHHHHHHHHHHHCCCCCCEEECCHHHHCCCCCCEEHHHHHHHHHEEECCCCCCCCCCC LQTNHGPIDASELKHRLGRYGLNPCGEILGADFHCNLAEIHLNQIDPCDEDGQADAFKAA EECCCCCCCHHHHHHHHHHCCCCHHHHHHCCCCCCCHHEEECCCCCCCCCCCCCHHHHHH ALSVACLLNHRFEVPRYRQSRAWDPIVGVSFTGLFDFFVHAFGTAWLRWWENGRPDTEEG HHHHHHHHHCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH RHFKQKEASFLSRWKKIVNETVWDYCDRHELRRPSRCTTVQPAGTKSLLTGAAPGWHPPK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCCCCCCHH AQRFIRRITFRKNDPVAMACMDYGYTVVPSQSDKDEQGRLLDDPFDPRCSEWLVEIPTEV HHHHHHHHHCCCCCCEEEEEECCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCC SWANLPGADAVNINNFSALAQFDFYMQVQSHYTAHNTSATIELREDEIEGLGEALHQAID CCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHEECCCCEEEEECHHHHHHHHHHHHHHHC NSEGYISAALLARFDANNATFPRLPFEPIDATTFERLQAEVVNRRVRSNFFEALHSYDQG CCCCCEEEHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC ELMEAGPAGCDSDKCLLPLAKPGS CCHHCCCCCCCCCCEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA