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The map label for this gene is pcbB [H]

Identifier: 124025554

GI number: 124025554

Start: 777552

End: 778610

Strand: Reverse

Name: pcbB [H]

Synonym: NATL1_08471

Alternate gene names: 124025554

Gene position: 778610-777552 (Counterclockwise)

Preceding gene: 124025556

Following gene: 124025553

Centisome position: 41.75

GC content: 42.97

Gene sequence:

>1059_bases
GTGCAGACCTACGGGAATCCTAGCGTTACCTATGACTGGTACGCGGGTAATTCAGGGACGGCCAATCGCTCCGGAAAATT
CATCGCTGCGCATGCTGCCCATGCTGGTTTGATGATGTTCTGGGCAGGTGCGTTCACTTTATTTGAGCTAGCTCGTTATG
ACTCATCCGTTGCGATGGGTAATCAAAACTTGATCTGCTTGCCTCACCTTGCACAACTTGGAATAGGTGGAATCGAAAAC
GGAGTAATAACTGAGCCTTATGGTTGCACAGTTATTGCTGTACTTCACCTAATTTTCTCTGGTGTTCTTGGTGCTGGTGG
AATTCTTCACTCAACAAGATATGACGGTGATTTAGGAAACTATCCTGAAGGAAGTCGTCCTAAAAAGTTTGACTTCGAGT
GGGACGATCCAGACAAACTTACATTTATTCTTGGTCACCACCTTATTTTCCTAGGTTTGGCAAACATTCAATTCGTTGAA
TGGGCTCAATATCATGGTATTTGGGATACTGCTTTAGGAGCTACTCGTACAGTTTCTTACAACCTAGATTTAGGAATGAT
ATGGAATCACCAAGCTGATTTCCTTCAAATCACCAGTTTGGAAGATGTTATGGGCGGTCATGCTTTCTTAGCATTTTTCC
AAATTATTGGTGGTGCATTCCACATCATCACTAAGCAATTTGGTGAGTATACAGAATTCAAAGGTAAAGGACTTCTTTCC
GCTGAAGCTGTTCTTTCATACTCATTAGCTGGTGTTGGCTATTGTGCACTTGTTGCAGCTTTCTGGAGTTCAACAAACAC
AACTGTTTACTCGACAGAATTCTTCGGAGACGTACTTCAACTTAAGTTTGATTTCGCTCCTTATTTTGTTGATACGGACT
CATCACTTGCGACTGGCGCTCATACAGCTAGAGCTTGGTTAGCTAATGTTCACTTCTATCTTGGCTTCTTCTTCATCCAG
GGGCATCTCTGGCATGCACTAAGAGCTATGGGATTTGACTTCAGACGCGTAGGTAAAGCGTTCGACAATATGGAAAACGC
AAAAATCACTAACGGTTAA

Upstream 100 bases:

>100_bases
GAAATATGTACAAAACCTACAATTTCAATAAGCAATGTGAAGGGATATGGAACTTACAGACCTATAAATATATCCTCTTA
CTGTTCTTTGTTTATTTCTC

Downstream 100 bases:

>100_bases
TTATTAATTTAATTTTTTAATTCAATTAGTGAAATAAAAAAGGCCCGCTTGCGGGCCTTTTTTAATGAAAACCATCGGTA
GAAATAAATACAAAACTGCT

Product: chlorophyll a/b binding light harvesting protein PcbD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 352; Mature: 352

Protein sequence:

>352_residues
MQTYGNPSVTYDWYAGNSGTANRSGKFIAAHAAHAGLMMFWAGAFTLFELARYDSSVAMGNQNLICLPHLAQLGIGGIEN
GVITEPYGCTVIAVLHLIFSGVLGAGGILHSTRYDGDLGNYPEGSRPKKFDFEWDDPDKLTFILGHHLIFLGLANIQFVE
WAQYHGIWDTALGATRTVSYNLDLGMIWNHQADFLQITSLEDVMGGHAFLAFFQIIGGAFHIITKQFGEYTEFKGKGLLS
AEAVLSYSLAGVGYCALVAAFWSSTNTTVYSTEFFGDVLQLKFDFAPYFVDTDSSLATGAHTARAWLANVHFYLGFFFIQ
GHLWHALRAMGFDFRRVGKAFDNMENAKITNG

Sequences:

>Translated_352_residues
MQTYGNPSVTYDWYAGNSGTANRSGKFIAAHAAHAGLMMFWAGAFTLFELARYDSSVAMGNQNLICLPHLAQLGIGGIEN
GVITEPYGCTVIAVLHLIFSGVLGAGGILHSTRYDGDLGNYPEGSRPKKFDFEWDDPDKLTFILGHHLIFLGLANIQFVE
WAQYHGIWDTALGATRTVSYNLDLGMIWNHQADFLQITSLEDVMGGHAFLAFFQIIGGAFHIITKQFGEYTEFKGKGLLS
AEAVLSYSLAGVGYCALVAAFWSSTNTTVYSTEFFGDVLQLKFDFAPYFVDTDSSLATGAHTARAWLANVHFYLGFFFIQ
GHLWHALRAMGFDFRRVGKAFDNMENAKITNG
>Mature_352_residues
MQTYGNPSVTYDWYAGNSGTANRSGKFIAAHAAHAGLMMFWAGAFTLFELARYDSSVAMGNQNLICLPHLAQLGIGGIEN
GVITEPYGCTVIAVLHLIFSGVLGAGGILHSTRYDGDLGNYPEGSRPKKFDFEWDDPDKLTFILGHHLIFLGLANIQFVE
WAQYHGIWDTALGATRTVSYNLDLGMIWNHQADFLQITSLEDVMGGHAFLAFFQIIGGAFHIITKQFGEYTEFKGKGLLS
AEAVLSYSLAGVGYCALVAAFWSSTNTTVYSTEFFGDVLQLKFDFAPYFVDTDSSLATGAHTARAWLANVHFYLGFFFIQ
GHLWHALRAMGFDFRRVGKAFDNMENAKITNG

Specific function: The antenna complex functions as a light receptor, it captures and delivers excitation energy to photosystems II and I. The Prochlorales pcb genes are not related to the higher plant LHCs [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the psbB/psbC family. IsiA/pcb subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000932 [H]

Pfam domain/function: PF00421 PSII [H]

EC number: NA

Molecular weight: Translated: 38766; Mature: 38766

Theoretical pI: Translated: 6.09; Mature: 6.09

Prosite motif: PS00639 THIOL_PROTEASE_HIS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQTYGNPSVTYDWYAGNSGTANRSGKFIAAHAAHAGLMMFWAGAFTLFELARYDSSVAMG
CCCCCCCCEEEEEECCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCEEEC
NQNLICLPHLAQLGIGGIENGVITEPYGCTVIAVLHLIFSGVLGAGGILHSTRYDGDLGN
CCCEEECCCHHHCCCCCCCCCCEECCCCHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCC
YPEGSRPKKFDFEWDDPDKLTFILGHHLIFLGLANIQFVEWAQYHGIWDTALGATRTVSY
CCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHCCCCEEHHHHHCCCHHHHCCCEEEEEE
NLDLGMIWNHQADFLQITSLEDVMGGHAFLAFFQIIGGAFHIITKQFGEYTEFKGKGLLS
ECCEEEEECCCCCEEEEECHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCH
AEAVLSYSLAGVGYCALVAAFWSSTNTTVYSTEFFGDVLQLKFDFAPYFVDTDSSLATGA
HHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHCCCEEEECCCCEEEECCCCHHCCH
HTARAWLANVHFYLGFFFIQGHLWHALRAMGFDFRRVGKAFDNMENAKITNG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCEECCC
>Mature Secondary Structure
MQTYGNPSVTYDWYAGNSGTANRSGKFIAAHAAHAGLMMFWAGAFTLFELARYDSSVAMG
CCCCCCCCEEEEEECCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCEEEC
NQNLICLPHLAQLGIGGIENGVITEPYGCTVIAVLHLIFSGVLGAGGILHSTRYDGDLGN
CCCEEECCCHHHCCCCCCCCCCEECCCCHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCC
YPEGSRPKKFDFEWDDPDKLTFILGHHLIFLGLANIQFVEWAQYHGIWDTALGATRTVSY
CCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHCCCCEEHHHHHCCCHHHHCCCEEEEEE
NLDLGMIWNHQADFLQITSLEDVMGGHAFLAFFQIIGGAFHIITKQFGEYTEFKGKGLLS
ECCEEEEECCCCCEEEEECHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCH
AEAVLSYSLAGVGYCALVAAFWSSTNTTVYSTEFFGDVLQLKFDFAPYFVDTDSSLATGA
HHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHCCCEEEECCCCEEEECCCCHHCCH
HTARAWLANVHFYLGFFFIQGHLWHALRAMGFDFRRVGKAFDNMENAKITNG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA