| Definition | Prochlorococcus marinus str. NATL1A, complete genome. |
|---|---|
| Accession | NC_008819 |
| Length | 1,864,731 |
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The map label for this gene is recG [H]
Identifier: 124025499
GI number: 124025499
Start: 723288
End: 725828
Strand: Direct
Name: recG [H]
Synonym: NATL1_07921
Alternate gene names: 124025499
Gene position: 723288-725828 (Clockwise)
Preceding gene: 124025498
Following gene: 124025500
Centisome position: 38.79
GC content: 35.69
Gene sequence:
>2541_bases ATGGTGGAAGGATACAACAAAAATTTAACCAGCTCTGATTCGAAACCCACTCCCGATCGTCAATCAAGTGAATTAACAAC TTGGATTCGATCTTTGCAACAAGCTTTAACAGTTGAGGTCGATCATGGCTTTACTAATATTCAAGGCAGAACAAATAAAT TTTCTTATTTTGTAAGTGGATATTTATTGAGAGGTCCTTCTACAGCTGTTAACGAATTAGATTTTTCTAGATTACAGGAA TTAGCTTTAGATTATGAAAAATATCAAACTATGTCTACAGACGATAGACGTAAAATAATAGTTCAAACCAGACAGGCTCT TCATAACCTTTTTAAATATAAGGAAGGTGAAGAGAGAGCCGAGCCTAGCAAATTAAAAATAAGAAGATCTCAAGAATCTA CTTTGCATAAGAGAAGTTCTTCTGCATATTCACTAAGTTTACAAAGTACGATTTCTTCTGTTAAAGGTGTTGGCTCCAAA CAAGCTGAGAGATTGTCTACATTAGGTCTTATTTTGATTCGTGATCTTATTAATTATTTTCCTCGTGATTATGTTGATTA CTCTTCATTGAAAACGATAGATAAAACTCAAGCAGGTCAGAATGTAACGATTGTGGCAAAAGTTAGACGATGCAGTTCAT TTAAAAGTCCTAAAAATCCAAATCTTTCAATTCTTGAGTTGTTTATAAAAGATAAGACAGGAGGAATGAAAATTACTAGG TTTTTCGCAGGTCGTCGGAGTAGCAGTATTGCGTATGTGAAATCTCAACAAAGTTTGTATCCTGTTGGTGCAACTGTTGC GGTAAGTGGGTTAGTTAAGGAAAGTAAATATGGTAAATCATTAAATGACCCTTTAATAGAAATTATCGATAGTCCCAACG GTTATTTGAAATCTAGAACTATTGGTCAGATATTGCCTGTGTACTCTTTAACGGAAGGTATTACGGCTGATAAGTTCAGA GATCTAATACAATCGATACTTTATTTGACATCAAATATTAAAGATCCATTGCCGAAAGAGACATTAAATAGGCTTGATTT ACCTTATCGGAAAGAAGCTTTTTTTCATATTCATAATCCTGCGAATTCAAAGACCTTAGCTAAAGCAAAAAGAAGAATTG TATTTGATGAGTTTTTATTATTGCAGCTTAGTCTTCTTTTAAGACGTGATTTACATAAGAAATCTGATTCTCCTCAACTA AGTATTGAGCCAAATATTAATAGCCTAGTTGGGAAATTCCTGAGTATTCTTCCATTCTCTCTGACTAATGCTCAAAGAAG GGTTTTAAAGGAAATTGAATCAGACATAGTCAAAGCAGAGCCAATGTCTCGACTATTACAAGGCGATGTTGGTAGTGGAA AAACTGTTATCGCTATTTCAGCACTTCTCACTGCAGTTCAATCAGGATGGCAGGGTGCTTTTATGGCTCCAACTGAGGTA CTCGCATCACAACACTTTCAAACACTAAGTAAATGGATTCCTCAACTTGAGATTAATGTTGATTTGTTAACTGGCTCTAC GCCAAAGTCTCGTCGGAAACAAATTCTGACTGATTTAGTAAATGGCTCTACAAAAATTCTTGTAGGAACTCATGCCCTAT TTGAAGACCCAGTTGTCTTCGAACGACTTGGCCTTGTAGTTGTCGATGAGCAACATCGCTTTGGTGTTAAGCAGAGGAAT AAATTGTTGAACAAAGGTTTACAACCTCACTTGCTAACGATGACGGCTACACCCATTCCCAGAACCTTAGCACTTACTTT GCATGGCGATCTAGATGTTAGTCAATTAGATGAGCTTCCTCCTGGTCGAACTCCCATTAATACTCAGCTGATATCACCTA AAGATAAAAAGTATGCATATGATTTGATCAGGAGTGAAATTAAGAAAGGACATCAAATCTATGTTGTATTACCTTTAATT GAAGAGTCTGAGAAACTAGAACTTAGTTCAGCTGTAGACGTACACCATCAATTGTCTACTGAAATTTTTTCAGAATTTAA TGTTGAATTACTTCATGGCAAAATGAAAAGTGTAGAAAAGCAAGAGGTTATTCAGAATTTTATTAATAAAAAAAGCGATA TATTGGTATCTACTACGGTTATTGAAGTAGGTGTTGATGTCCCAAATGCAAGTGTAATGTTGATAGAAGATTCTGATCGT TTTGGTTTAGCTCAATTGCATCAACTAAGGGGCCGAGTAGGAAGAGGAGCTACCAAGTCATACTGTCTCCTGAGTCATCA AAATAAAAATAAATTATCTAGACAAAGACTGGACGTTCTTGTGAACTCTAATGACGGATTTGAAATTTCTGAAATTGATT TGCGTTTTCGTGGACCTGGACAAGTCTTAGGTACTAAACAATCAGGCTTGCCTGACTTTGCTCTGGCATCATTAGCTGAT GATGCTGATGTTCTTGAAATTGCACGAAAGGAGGCTCGAATTATTTTAGATTCCGATCCTCTGCTTTCAAACAACTCAAT GCTTCGTTTGTCAATCAAAGAGCAGTGGGACAGACTAAAAATTGGTAATAAATTAAATTAA
Upstream 100 bases:
>100_bases ATAGAACTAATATGAAACATTATCAAAATGTACTTTTAGGTATGATTAAACAACAACGTTACTGGCAAGGTCGCTCCATA GCAGAAGAGGTTAATAAAAA
Downstream 100 bases:
>100_bases CTTTTTGATGAGTCATTACTATTGAACTCATTCTTTTTGAAGGTAAGCTTAAGGAAAGAATTTTTGTGCGAATGAATTTT TACCCTAATATTTTATACAA
Product: ATP-dependent DNA helicase RecG
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 846; Mature: 846
Protein sequence:
>846_residues MVEGYNKNLTSSDSKPTPDRQSSELTTWIRSLQQALTVEVDHGFTNIQGRTNKFSYFVSGYLLRGPSTAVNELDFSRLQE LALDYEKYQTMSTDDRRKIIVQTRQALHNLFKYKEGEERAEPSKLKIRRSQESTLHKRSSSAYSLSLQSTISSVKGVGSK QAERLSTLGLILIRDLINYFPRDYVDYSSLKTIDKTQAGQNVTIVAKVRRCSSFKSPKNPNLSILELFIKDKTGGMKITR FFAGRRSSSIAYVKSQQSLYPVGATVAVSGLVKESKYGKSLNDPLIEIIDSPNGYLKSRTIGQILPVYSLTEGITADKFR DLIQSILYLTSNIKDPLPKETLNRLDLPYRKEAFFHIHNPANSKTLAKAKRRIVFDEFLLLQLSLLLRRDLHKKSDSPQL SIEPNINSLVGKFLSILPFSLTNAQRRVLKEIESDIVKAEPMSRLLQGDVGSGKTVIAISALLTAVQSGWQGAFMAPTEV LASQHFQTLSKWIPQLEINVDLLTGSTPKSRRKQILTDLVNGSTKILVGTHALFEDPVVFERLGLVVVDEQHRFGVKQRN KLLNKGLQPHLLTMTATPIPRTLALTLHGDLDVSQLDELPPGRTPINTQLISPKDKKYAYDLIRSEIKKGHQIYVVLPLI EESEKLELSSAVDVHHQLSTEIFSEFNVELLHGKMKSVEKQEVIQNFINKKSDILVSTTVIEVGVDVPNASVMLIEDSDR FGLAQLHQLRGRVGRGATKSYCLLSHQNKNKLSRQRLDVLVNSNDGFEISEIDLRFRGPGQVLGTKQSGLPDFALASLAD DADVLEIARKEARIILDSDPLLSNNSMLRLSIKEQWDRLKIGNKLN
Sequences:
>Translated_846_residues MVEGYNKNLTSSDSKPTPDRQSSELTTWIRSLQQALTVEVDHGFTNIQGRTNKFSYFVSGYLLRGPSTAVNELDFSRLQE LALDYEKYQTMSTDDRRKIIVQTRQALHNLFKYKEGEERAEPSKLKIRRSQESTLHKRSSSAYSLSLQSTISSVKGVGSK QAERLSTLGLILIRDLINYFPRDYVDYSSLKTIDKTQAGQNVTIVAKVRRCSSFKSPKNPNLSILELFIKDKTGGMKITR FFAGRRSSSIAYVKSQQSLYPVGATVAVSGLVKESKYGKSLNDPLIEIIDSPNGYLKSRTIGQILPVYSLTEGITADKFR DLIQSILYLTSNIKDPLPKETLNRLDLPYRKEAFFHIHNPANSKTLAKAKRRIVFDEFLLLQLSLLLRRDLHKKSDSPQL SIEPNINSLVGKFLSILPFSLTNAQRRVLKEIESDIVKAEPMSRLLQGDVGSGKTVIAISALLTAVQSGWQGAFMAPTEV LASQHFQTLSKWIPQLEINVDLLTGSTPKSRRKQILTDLVNGSTKILVGTHALFEDPVVFERLGLVVVDEQHRFGVKQRN KLLNKGLQPHLLTMTATPIPRTLALTLHGDLDVSQLDELPPGRTPINTQLISPKDKKYAYDLIRSEIKKGHQIYVVLPLI EESEKLELSSAVDVHHQLSTEIFSEFNVELLHGKMKSVEKQEVIQNFINKKSDILVSTTVIEVGVDVPNASVMLIEDSDR FGLAQLHQLRGRVGRGATKSYCLLSHQNKNKLSRQRLDVLVNSNDGFEISEIDLRFRGPGQVLGTKQSGLPDFALASLAD DADVLEIARKEARIILDSDPLLSNNSMLRLSIKEQWDRLKIGNKLN >Mature_846_residues MVEGYNKNLTSSDSKPTPDRQSSELTTWIRSLQQALTVEVDHGFTNIQGRTNKFSYFVSGYLLRGPSTAVNELDFSRLQE LALDYEKYQTMSTDDRRKIIVQTRQALHNLFKYKEGEERAEPSKLKIRRSQESTLHKRSSSAYSLSLQSTISSVKGVGSK QAERLSTLGLILIRDLINYFPRDYVDYSSLKTIDKTQAGQNVTIVAKVRRCSSFKSPKNPNLSILELFIKDKTGGMKITR FFAGRRSSSIAYVKSQQSLYPVGATVAVSGLVKESKYGKSLNDPLIEIIDSPNGYLKSRTIGQILPVYSLTEGITADKFR DLIQSILYLTSNIKDPLPKETLNRLDLPYRKEAFFHIHNPANSKTLAKAKRRIVFDEFLLLQLSLLLRRDLHKKSDSPQL SIEPNINSLVGKFLSILPFSLTNAQRRVLKEIESDIVKAEPMSRLLQGDVGSGKTVIAISALLTAVQSGWQGAFMAPTEV LASQHFQTLSKWIPQLEINVDLLTGSTPKSRRKQILTDLVNGSTKILVGTHALFEDPVVFERLGLVVVDEQHRFGVKQRN KLLNKGLQPHLLTMTATPIPRTLALTLHGDLDVSQLDELPPGRTPINTQLISPKDKKYAYDLIRSEIKKGHQIYVVLPLI EESEKLELSSAVDVHHQLSTEIFSEFNVELLHGKMKSVEKQEVIQNFINKKSDILVSTTVIEVGVDVPNASVMLIEDSDR FGLAQLHQLRGRVGRGATKSYCLLSHQNKNKLSRQRLDVLVNSNDGFEISEIDLRFRGPGQVLGTKQSGLPDFALASLAD DADVLEIARKEARIILDSDPLLSNNSMLRLSIKEQWDRLKIGNKLN
Specific function: Critical role in recombination and DNA repair. Help process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3' to 5' polarity. RecG unwind branched dup
COG id: COG1200
COG function: function code LK; RecG-like helicase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase C-terminal domain [H]
Homologues:
Organism=Escherichia coli, GI2367254, Length=688, Percent_Identity=39.9709302325581, Blast_Score=420, Evalue=1e-118, Organism=Escherichia coli, GI1787357, Length=383, Percent_Identity=34.4647519582245, Blast_Score=237, Evalue=3e-63,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014001 - InterPro: IPR011545 - InterPro: IPR004609 - InterPro: IPR001650 - InterPro: IPR014021 - InterPro: IPR016027 - InterPro: IPR004365 [H]
Pfam domain/function: PF00270 DEAD; PF00271 Helicase_C; PF01336 tRNA_anti [H]
EC number: =3.6.4.12 [H]
Molecular weight: Translated: 94910; Mature: 94910
Theoretical pI: Translated: 10.03; Mature: 10.03
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.3 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVEGYNKNLTSSDSKPTPDRQSSELTTWIRSLQQALTVEVDHGFTNIQGRTNKFSYFVSG CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHEEEECCCEECCCCCCCEEEEEEEE YLLRGPSTAVNELDFSRLQELALDYEKYQTMSTDDRRKIIVQTRQALHNLFKYKEGEERA EEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCC EPSKLKIRRSQESTLHKRSSSAYSLSLQSTISSVKGVGSKQAERLSTLGLILIRDLINYF CCCHHEEECCHHHHHHHCCCCCEEEEHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC PRDYVDYSSLKTIDKTQAGQNVTIVAKVRRCSSFKSPKNPNLSILELFIKDKTGGMKITR CCCCCCHHHHHHHHHHCCCCCEEEEEEEHHHHCCCCCCCCCCEEEEEEEECCCCCEEEEE FFAGRRSSSIAYVKSQQSLYPVGATVAVSGLVKESKYGKSLNDPLIEIIDSPNGYLKSRT EECCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCCCCCCH IGQILPVYSLTEGITADKFRDLIQSILYLTSNIKDPLPKETLNRLDLPYRKEAFFHIHNP HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCCEEEEEECC ANSKTLAKAKRRIVFDEFLLLQLSLLLRRDLHKKSDSPQLSIEPNINSLVGKFLSILPFS CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCHHHHHHHHHHHHCCH LTNAQRRVLKEIESDIVKAEPMSRLLQGDVGSGKTVIAISALLTAVQSGWQGAFMAPTEV HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHH LASQHFQTLSKWIPQLEINVDLLTGSTPKSRRKQILTDLVNGSTKILVGTHALFEDPVVF HHHHHHHHHHHHCCCEEEEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEHHHHCCCHHH ERLGLVVVDEQHRFGVKQRNKLLNKGLQPHLLTMTATPIPRTLALTLHGDLDVSQLDELP HHCCEEEECCHHHCCHHHHHHHHHCCCCCEEEEEECCCCCCEEEEEEECCCCHHHHHCCC PGRTPINTQLISPKDKKYAYDLIRSEIKKGHQIYVVLPLIEESEKLELSSAVDVHHQLST CCCCCCCCEEECCCHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCEEHHHHHHHHHHHHH EIFSEFNVELLHGKMKSVEKQEVIQNFINKKSDILVSTTVIEVGVDVPNASVMLIEDSDR HHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCCCCCEEEEEECCCC FGLAQLHQLRGRVGRGATKSYCLLSHQNKNKLSRQRLDVLVNSNDGFEISEIDLRFRGPG CCHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHEEEECCCCCEEEEEEEEECCCC QVLGTKQSGLPDFALASLADDADVLEIARKEARIILDSDPLLSNNSMLRLSIKEQWDRLK CEECCCCCCCCHHHHHHHCCCHHHHHHHHHCCEEEECCCCCCCCCCEEEEEHHHHHHHHC IGNKLN CCCCCC >Mature Secondary Structure MVEGYNKNLTSSDSKPTPDRQSSELTTWIRSLQQALTVEVDHGFTNIQGRTNKFSYFVSG CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHEEEECCCEECCCCCCCEEEEEEEE YLLRGPSTAVNELDFSRLQELALDYEKYQTMSTDDRRKIIVQTRQALHNLFKYKEGEERA EEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCC EPSKLKIRRSQESTLHKRSSSAYSLSLQSTISSVKGVGSKQAERLSTLGLILIRDLINYF CCCHHEEECCHHHHHHHCCCCCEEEEHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC PRDYVDYSSLKTIDKTQAGQNVTIVAKVRRCSSFKSPKNPNLSILELFIKDKTGGMKITR CCCCCCHHHHHHHHHHCCCCCEEEEEEEHHHHCCCCCCCCCCEEEEEEEECCCCCEEEEE FFAGRRSSSIAYVKSQQSLYPVGATVAVSGLVKESKYGKSLNDPLIEIIDSPNGYLKSRT EECCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCCCCCCH IGQILPVYSLTEGITADKFRDLIQSILYLTSNIKDPLPKETLNRLDLPYRKEAFFHIHNP HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCCEEEEEECC ANSKTLAKAKRRIVFDEFLLLQLSLLLRRDLHKKSDSPQLSIEPNINSLVGKFLSILPFS CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCHHHHHHHHHHHHCCH LTNAQRRVLKEIESDIVKAEPMSRLLQGDVGSGKTVIAISALLTAVQSGWQGAFMAPTEV HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHH LASQHFQTLSKWIPQLEINVDLLTGSTPKSRRKQILTDLVNGSTKILVGTHALFEDPVVF HHHHHHHHHHHHCCCEEEEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEHHHHCCCHHH ERLGLVVVDEQHRFGVKQRNKLLNKGLQPHLLTMTATPIPRTLALTLHGDLDVSQLDELP HHCCEEEECCHHHCCHHHHHHHHHCCCCCEEEEEECCCCCCEEEEEEECCCCHHHHHCCC PGRTPINTQLISPKDKKYAYDLIRSEIKKGHQIYVVLPLIEESEKLELSSAVDVHHQLST CCCCCCCCEEECCCHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCEEHHHHHHHHHHHHH EIFSEFNVELLHGKMKSVEKQEVIQNFINKKSDILVSTTVIEVGVDVPNASVMLIEDSDR HHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCCCCCEEEEEECCCC FGLAQLHQLRGRVGRGATKSYCLLSHQNKNKLSRQRLDVLVNSNDGFEISEIDLRFRGPG CCHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHEEEECCCCCEEEEEEEEECCCC QVLGTKQSGLPDFALASLADDADVLEIARKEARIILDSDPLLSNNSMLRLSIKEQWDRLK CEECCCCCCCCHHHHHHHCCCHHHHHHHHHCCEEEECCCCCCCCCCEEEEEHHHHHHHHC IGNKLN CCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8590279; 8905231 [H]