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The map label for this gene is rbcL [H]

Identifier: 124025315

GI number: 124025315

Start: 549278

End: 550690

Strand: Direct

Name: rbcL [H]

Synonym: NATL1_06041

Alternate gene names: 124025315

Gene position: 549278-550690 (Clockwise)

Preceding gene: 124025314

Following gene: 124025316

Centisome position: 29.46

GC content: 43.31

Gene sequence:

>1413_bases
ATGGCTAAAAAGTATGATGCTGGAGTTAAGGAGTATAGAGATACTTACTTCACTCCTGATTACGTCCCCCTAGATACTGA
TCTACTTGCATGTTTTAAATGCACAGGTCAGGAAGGTGTACCTAAAGAAGAAGTTGCAGCAGCTGTTGCGGCTGAATCAT
CTACAGGTACATGGTCAACAGTTTGGTCAGAATTACTTGTAGATCTTGAATTCTACAAAGGCCGCTGTTACCGCATTGAA
GATGTCCCTGGTGACAAGGATGCCTTCTATGCATTTATTGCTTATCCCTTAGATCTTTTTGAAGAAGGATCTATAACTAA
CGTTTTGACATCACTTGTTGGAAACGTCTTTGGTTTTAAAGCTTTGCGTCATCTTCGACTTGAAGATATTCGCTTCCCAA
TGGCATTTATCAAAACCTGCGGCGGACCACCTAGTGGAATAGTAGTTGAACGTGATCGTCTTAATAAATACGGTCGTCCA
TTACTTGGTTGTACTATTAAGCCAAAACTTGGTCTTTCTGGTAAAAACTACGGTCGTGTTGTTTACGAATGCCTTCGTGG
TGGTCTTGATCTAACTAAAGATGATGAGAATATCAATTCTCAGCCATTCCAGCGTTGGAGAGAGCGTTTTGAATTTGTTG
CTGAAGCTGTAAAGCTAGCTCAACAGGAAACTGGTGAAGTTAAAGGTCACTACCTGAATTGCACAGCAACTACTCCTGAA
GAGATGTATAAGCGTGCTGAGTTCGCTAAAGAACTTGACATGCCAATCATCATGCATGACTACATAACTGGTGGTTTTAC
TGCTAATACAGGTCTTGCTAATTGGTGCCGTGAAAATGGCATGCTTCTTCATATTCACCGTGCTATGCATGCGGTTATCG
ACCGTCATCCTCAGCATGGTATCCACTTCAGAGTTCTTGCTAAGTGTTTGCGTCTATCTGGCGGAGATCAACTTCATACC
GGAACAGTTGTTGGAAAACTAGAAGGAGATCGTCAAACAACTCTTGGTTATATCGATAACCTACGTGAATCCTTTGTTCC
TGAAGACCGTACTCGCGGTAACTTCTTTGATCAAGATTGGGGTTCTATGCCTGGTGTATTTGCTGTGGCATCTGGTGGTA
TTCATGTTTGGCATATGCCAGCATTGCTTGCAATCTTTGGAGATGATTCATGTCTCCAATTTGGAGGTGGTACCCATGGA
CACCCTTGGGGATCAGCTGCTGGTGCAGCCGCTAACCGAGTAGCTCTAGAGGCATGTGTGAAAGCGCGTAATGCAGGCAG
AGAAATCGAAAAAGAAAGTCGCGATATCCTTCTAGAAGCCGCAAAGCATAGCCCTGAGTTGGCAATTGCTCTTGAGACAT
GGAAGGAGATTAAGTTCGAATTCGATACAGTCGATAAACTCGACGTTCAGTAG

Upstream 100 bases:

>100_bases
ACGGTAACTTCTTAGGTCAGAAGGACTGATTTTGACTAAGTCCTAAGAGGAGAGGACTTTTCAAATTTTCAACCTTCTAA
CTAATTAACAGGAGCTATCA

Downstream 100 bases:

>100_bases
AAAAGATATAGAGGTGACATTATAAGTTGCCTCTAACTTTCTTAAATTCACTAGTCGATAACTAAATCGACTTTCACTCA
TTCACTAACTTAAGTTCACC

Product: ribulose bisophosphate carboxylase

Products: NA

Alternate protein names: RuBisCO large subunit [H]

Number of amino acids: Translated: 470; Mature: 469

Protein sequence:

>470_residues
MAKKYDAGVKEYRDTYFTPDYVPLDTDLLACFKCTGQEGVPKEEVAAAVAAESSTGTWSTVWSELLVDLEFYKGRCYRIE
DVPGDKDAFYAFIAYPLDLFEEGSITNVLTSLVGNVFGFKALRHLRLEDIRFPMAFIKTCGGPPSGIVVERDRLNKYGRP
LLGCTIKPKLGLSGKNYGRVVYECLRGGLDLTKDDENINSQPFQRWRERFEFVAEAVKLAQQETGEVKGHYLNCTATTPE
EMYKRAEFAKELDMPIIMHDYITGGFTANTGLANWCRENGMLLHIHRAMHAVIDRHPQHGIHFRVLAKCLRLSGGDQLHT
GTVVGKLEGDRQTTLGYIDNLRESFVPEDRTRGNFFDQDWGSMPGVFAVASGGIHVWHMPALLAIFGDDSCLQFGGGTHG
HPWGSAAGAAANRVALEACVKARNAGREIEKESRDILLEAAKHSPELAIALETWKEIKFEFDTVDKLDVQ

Sequences:

>Translated_470_residues
MAKKYDAGVKEYRDTYFTPDYVPLDTDLLACFKCTGQEGVPKEEVAAAVAAESSTGTWSTVWSELLVDLEFYKGRCYRIE
DVPGDKDAFYAFIAYPLDLFEEGSITNVLTSLVGNVFGFKALRHLRLEDIRFPMAFIKTCGGPPSGIVVERDRLNKYGRP
LLGCTIKPKLGLSGKNYGRVVYECLRGGLDLTKDDENINSQPFQRWRERFEFVAEAVKLAQQETGEVKGHYLNCTATTPE
EMYKRAEFAKELDMPIIMHDYITGGFTANTGLANWCRENGMLLHIHRAMHAVIDRHPQHGIHFRVLAKCLRLSGGDQLHT
GTVVGKLEGDRQTTLGYIDNLRESFVPEDRTRGNFFDQDWGSMPGVFAVASGGIHVWHMPALLAIFGDDSCLQFGGGTHG
HPWGSAAGAAANRVALEACVKARNAGREIEKESRDILLEAAKHSPELAIALETWKEIKFEFDTVDKLDVQ
>Mature_469_residues
AKKYDAGVKEYRDTYFTPDYVPLDTDLLACFKCTGQEGVPKEEVAAAVAAESSTGTWSTVWSELLVDLEFYKGRCYRIED
VPGDKDAFYAFIAYPLDLFEEGSITNVLTSLVGNVFGFKALRHLRLEDIRFPMAFIKTCGGPPSGIVVERDRLNKYGRPL
LGCTIKPKLGLSGKNYGRVVYECLRGGLDLTKDDENINSQPFQRWRERFEFVAEAVKLAQQETGEVKGHYLNCTATTPEE
MYKRAEFAKELDMPIIMHDYITGGFTANTGLANWCRENGMLLHIHRAMHAVIDRHPQHGIHFRVLAKCLRLSGGDQLHTG
TVVGKLEGDRQTTLGYIDNLRESFVPEDRTRGNFFDQDWGSMPGVFAVASGGIHVWHMPALLAIFGDDSCLQFGGGTHGH
PWGSAAGAAANRVALEACVKARNAGREIEKESRDILLEAAKHSPELAIALETWKEIKFEFDTVDKLDVQ

Specific function: RuBisCO catalyzes two reactions:the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultan

COG id: COG1850

COG function: function code G; Ribulose 1,5-bisphosphate carboxylase, large subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RuBisCO large chain family. Type I subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020888
- InterPro:   IPR000685
- InterPro:   IPR017443
- InterPro:   IPR017444 [H]

Pfam domain/function: PF00016 RuBisCO_large; PF02788 RuBisCO_large_N [H]

EC number: =4.1.1.39 [H]

Molecular weight: Translated: 52427; Mature: 52296

Theoretical pI: Translated: 6.01; Mature: 6.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKKYDAGVKEYRDTYFTPDYVPLDTDLLACFKCTGQEGVPKEEVAAAVAAESSTGTWST
CCCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHH
VWSELLVDLEFYKGRCYRIEDVPGDKDAFYAFIAYPLDLFEEGSITNVLTSLVGNVFGFK
HHHHHHHHHHHHCCCEEEECCCCCCHHHEEEHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
ALRHLRLEDIRFPMAFIKTCGGPPSGIVVERDRLNKYGRPLLGCTIKPKLGLSGKNYGRV
HHHHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHCCCEEEEEECCCCCCCCCCHHHH
VYECLRGGLDLTKDDENINSQPFQRWRERFEFVAEAVKLAQQETGEVKGHYLNCTATTPE
HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHH
EMYKRAEFAKELDMPIIMHDYITGGFTANTGLANWCRENGMLLHIHRAMHAVIDRHPQHG
HHHHHHHHHHHCCCCEEEHHHCCCCCCCCCCHHHHHHHCCEEEEHHHHHHHHHHCCCCCC
IHFRVLAKCLRLSGGDQLHTGTVVGKLEGDRQTTLGYIDNLRESFVPEDRTRGNFFDQDW
CHHHHHHHHHHCCCCCEEECCEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
GSMPGVFAVASGGIHVWHMPALLAIFGDDSCLQFGGGTHGHPWGSAAGAAANRVALEACV
CCCCCEEEEECCCEEEEEHHHHHHHCCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHH
KARNAGREIEKESRDILLEAAKHSPELAIALETWKEIKFEFDTVDKLDVQ
HHHHCCHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHEEEECCCCCCCCC
>Mature Secondary Structure 
AKKYDAGVKEYRDTYFTPDYVPLDTDLLACFKCTGQEGVPKEEVAAAVAAESSTGTWST
CCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHH
VWSELLVDLEFYKGRCYRIEDVPGDKDAFYAFIAYPLDLFEEGSITNVLTSLVGNVFGFK
HHHHHHHHHHHHCCCEEEECCCCCCHHHEEEHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
ALRHLRLEDIRFPMAFIKTCGGPPSGIVVERDRLNKYGRPLLGCTIKPKLGLSGKNYGRV
HHHHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHCCCEEEEEECCCCCCCCCCHHHH
VYECLRGGLDLTKDDENINSQPFQRWRERFEFVAEAVKLAQQETGEVKGHYLNCTATTPE
HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHH
EMYKRAEFAKELDMPIIMHDYITGGFTANTGLANWCRENGMLLHIHRAMHAVIDRHPQHG
HHHHHHHHHHHCCCCEEEHHHCCCCCCCCCCHHHHHHHCCEEEEHHHHHHHHHHCCCCCC
IHFRVLAKCLRLSGGDQLHTGTVVGKLEGDRQTTLGYIDNLRESFVPEDRTRGNFFDQDW
CHHHHHHHHHHCCCCCEEECCEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
GSMPGVFAVASGGIHVWHMPALLAIFGDDSCLQFGGGTHGHPWGSAAGAAANRVALEACV
CCCCCEEEEECCCEEEEEHHHHHHHCCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHH
KARNAGREIEKESRDILLEAAKHSPELAIALETWKEIKFEFDTVDKLDVQ
HHHHCCHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA