| Definition | Hyperthermus butylicus DSM 5456 chromosome, complete genome. |
|---|---|
| Accession | NC_008818 |
| Length | 1,667,163 |
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The map label for this gene is oppF [H]
Identifier: 124027700
GI number: 124027700
Start: 815270
End: 816361
Strand: Reverse
Name: oppF [H]
Synonym: Hbut_0822
Alternate gene names: 124027700
Gene position: 816361-815270 (Counterclockwise)
Preceding gene: 124027701
Following gene: 124027699
Centisome position: 48.97
GC content: 53.11
Gene sequence:
>1092_bases ATGAGCTTCGTAATTAAGGCTGAAAACCTAAAGGTCTGGTACCCGGTACGCCGCTCACTGCTAGACGTTATTCTCCGTAA ACCCCAGCTTTACGTACACGCAGTAGACGGGATTAGCCTCGAGATAAAGCCAGGCGAAACATACTGCCTCGTTGGCGAGA GCGGCTGCGGCAAGTCCACGACTGGCCGTGCACTGATAAGGCTTGTAGAGAACGCCGTGGTTAGCGGTAGGGTTCTCTTT AGGCCCAGTGAGAAAACACTTGAGGAGATAGCTAAGCTAGCCCCCCAAGCCATTGTTGACAAGGAGCAGGGAATAGTGGA TATCTACAAGGTGCCTGACAAGTATATGAAGCCGCTGCGTCGTGAGCTACAGATAGTCTTCCAGGATCCCTTTGGCAGCC TAAACCCACGCATGAAGATAGGCGAGATTCTAGAGGAGCCCCTGCTAATACACGGCATTGGCGAGACCTACGAGGAGCGT CTCGAGATAGTTATGAAGGCCTTGGAGATGGTTAAGCTAACACCACCCGAGGACTTCGTGAACCGTTACCCGCATCAACT TAGCGGCGGGCAGAGGCAGCGTGTATCCATAGCGAAGGCTCTACTGTTAAACCCGAGGTTTATAGTGGCCGACGAGCCTG TGTCGATGCTCGACGTCTCCATACGCGCTGAGGTGCTGGAGATACTTAATGAACTAAGAGATAAGCACAAGCTGGCACAG CTATTCATTACCCACGATCTAGCTCTGGCGCGCTATGTGTGTGACAGGATAGCAGTAATGTACCTGGGCAAAATAGTGGA GGAGGCTGAGGCAGACGAGCTGATAAACAACCCACTCCACCCCTACACCAAGGCACTTATTTCAGCGATTCCCGAGCCCG ACCCCAGCAACAGGCTGAAGACACGCTACCTCCCAATAAAGGGCGAAGTCACAAGTGCCATACACCTCCCCAAAGGCTGT AGATTCAGGCCACGCTGCCTAGCCTACGATGAGAACGAACAGGTACGCAGCCTTTGCGAGAAGGAGGAGCCACCACTAGT CGAGGTCAAGCAGGGTCACAAGGTAGCCTGCTGGCTGTACGCGAAAAAGTAA
Upstream 100 bases:
>100_bases ATTACCTCGCTAGCCTTCGTACTCCTAGGCCTAGCCCTCGAGACAGTTGTCGAGCCCAGGCTGAAGAGGAGGTAGGAGGC GTGAGGGGTGAGGGCTGGGT
Downstream 100 bases:
>100_bases CTGCCAAACCGTTTTCCGCACAGGATAGCCTCAACAGTATTTCAATTCTTCTCTCCAAATATTCTTCCACGCCTAGCACG CTCTTAGAGTTCTCCATACA
Product: oligopeptide transport ATP-binding protein
Products: ADP; phosphate; dipeptides [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 363; Mature: 362
Protein sequence:
>363_residues MSFVIKAENLKVWYPVRRSLLDVILRKPQLYVHAVDGISLEIKPGETYCLVGESGCGKSTTGRALIRLVENAVVSGRVLF RPSEKTLEEIAKLAPQAIVDKEQGIVDIYKVPDKYMKPLRRELQIVFQDPFGSLNPRMKIGEILEEPLLIHGIGETYEER LEIVMKALEMVKLTPPEDFVNRYPHQLSGGQRQRVSIAKALLLNPRFIVADEPVSMLDVSIRAEVLEILNELRDKHKLAQ LFITHDLALARYVCDRIAVMYLGKIVEEAEADELINNPLHPYTKALISAIPEPDPSNRLKTRYLPIKGEVTSAIHLPKGC RFRPRCLAYDENEQVRSLCEKEEPPLVEVKQGHKVACWLYAKK
Sequences:
>Translated_363_residues MSFVIKAENLKVWYPVRRSLLDVILRKPQLYVHAVDGISLEIKPGETYCLVGESGCGKSTTGRALIRLVENAVVSGRVLF RPSEKTLEEIAKLAPQAIVDKEQGIVDIYKVPDKYMKPLRRELQIVFQDPFGSLNPRMKIGEILEEPLLIHGIGETYEER LEIVMKALEMVKLTPPEDFVNRYPHQLSGGQRQRVSIAKALLLNPRFIVADEPVSMLDVSIRAEVLEILNELRDKHKLAQ LFITHDLALARYVCDRIAVMYLGKIVEEAEADELINNPLHPYTKALISAIPEPDPSNRLKTRYLPIKGEVTSAIHLPKGC RFRPRCLAYDENEQVRSLCEKEEPPLVEVKQGHKVACWLYAKK >Mature_362_residues SFVIKAENLKVWYPVRRSLLDVILRKPQLYVHAVDGISLEIKPGETYCLVGESGCGKSTTGRALIRLVENAVVSGRVLFR PSEKTLEEIAKLAPQAIVDKEQGIVDIYKVPDKYMKPLRRELQIVFQDPFGSLNPRMKIGEILEEPLLIHGIGETYEERL EIVMKALEMVKLTPPEDFVNRYPHQLSGGQRQRVSIAKALLLNPRFIVADEPVSMLDVSIRAEVLEILNELRDKHKLAQL FITHDLALARYVCDRIAVMYLGKIVEEAEADELINNPLHPYTKALISAIPEPDPSNRLKTRYLPIKGEVTSAIHLPKGCR FRPRCLAYDENEQVRSLCEKEEPPLVEVKQGHKVACWLYAKK
Specific function: Part Of The Binding-Protein-Dependent Transport System For Dipeptides. Probably Responsible For Energy Coupling To The Transport System. [C]
COG id: COG4608
COG function: function code E; ABC-type oligopeptide transport system, ATPase component
Gene ontology:
Cell location: Inner Membrane-Associated [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI9961252, Length=325, Percent_Identity=24.9230769230769, Blast_Score=84, Evalue=2e-16, Organism=Homo sapiens, GI9961250, Length=249, Percent_Identity=30.5220883534137, Blast_Score=84, Evalue=3e-16, Organism=Homo sapiens, GI4505771, Length=249, Percent_Identity=30.5220883534137, Blast_Score=84, Evalue=3e-16, Organism=Homo sapiens, GI42490749, Length=263, Percent_Identity=30.4182509505703, Blast_Score=76, Evalue=4e-14, Organism=Homo sapiens, GI171184400, Length=265, Percent_Identity=29.811320754717, Blast_Score=72, Evalue=8e-13, Organism=Homo sapiens, GI9665248, Length=251, Percent_Identity=27.0916334661355, Blast_Score=69, Evalue=9e-12, Organism=Escherichia coli, GI1789962, Length=356, Percent_Identity=40.1685393258427, Blast_Score=243, Evalue=1e-65, Organism=Escherichia coli, GI1787500, Length=332, Percent_Identity=41.8674698795181, Blast_Score=240, Evalue=1e-64, Organism=Escherichia coli, GI145693107, Length=315, Percent_Identity=42.5396825396825, Blast_Score=233, Evalue=1e-62, Organism=Escherichia coli, GI48994883, Length=343, Percent_Identity=35.2769679300292, Blast_Score=203, Evalue=1e-53, Organism=Escherichia coli, GI1787758, Length=356, Percent_Identity=33.9887640449438, Blast_Score=194, Evalue=6e-51, Organism=Escherichia coli, GI1788506, Length=287, Percent_Identity=35.5400696864112, Blast_Score=183, Evalue=2e-47, Organism=Escherichia coli, GI1789963, Length=325, Percent_Identity=36, Blast_Score=182, Evalue=3e-47, Organism=Escherichia coli, GI1787759, Length=329, Percent_Identity=32.8267477203647, Blast_Score=169, Evalue=4e-43, Organism=Escherichia coli, GI1787547, Length=258, Percent_Identity=31.0077519379845, Blast_Score=144, Evalue=7e-36, Organism=Escherichia coli, GI1789891, Length=234, Percent_Identity=39.3162393162393, Blast_Score=138, Evalue=5e-34, Organism=Escherichia coli, GI1787548, Length=303, Percent_Identity=29.042904290429, Blast_Score=138, Evalue=5e-34, Organism=Escherichia coli, GI1789032, Length=268, Percent_Identity=35.4477611940299, Blast_Score=134, Evalue=7e-33, Organism=Escherichia coli, GI48994997, Length=259, Percent_Identity=31.2741312741313, Blast_Score=122, Evalue=4e-29, Organism=Escherichia coli, GI1787712, Length=259, Percent_Identity=31.6602316602317, Blast_Score=119, Evalue=3e-28, Organism=Escherichia coli, GI87081791, Length=259, Percent_Identity=32.8185328185328, Blast_Score=117, Evalue=2e-27, Organism=Escherichia coli, GI1788225, Length=251, Percent_Identity=33.4661354581673, Blast_Score=114, Evalue=8e-27, Organism=Escherichia coli, GI1786398, Length=290, Percent_Identity=28.2758620689655, Blast_Score=114, Evalue=1e-26, Organism=Escherichia coli, GI1787089, Length=270, Percent_Identity=31.8518518518519, Blast_Score=112, Evalue=5e-26, Organism=Escherichia coli, GI1789890, Length=276, Percent_Identity=29.7101449275362, Blast_Score=112, Evalue=5e-26, Organism=Escherichia coli, GI1789672, Length=288, Percent_Identity=29.5138888888889, Blast_Score=108, Evalue=6e-25, Organism=Escherichia coli, GI87081709, Length=254, Percent_Identity=29.9212598425197, Blast_Score=107, Evalue=1e-24, Organism=Escherichia coli, GI1787370, Length=253, Percent_Identity=33.596837944664, Blast_Score=105, Evalue=7e-24, Organism=Escherichia coli, GI1787029, Length=254, Percent_Identity=30.7086614173228, Blast_Score=99, Evalue=4e-22, Organism=Escherichia coli, GI87082267, Length=291, Percent_Identity=28.1786941580756, Blast_Score=96, Evalue=2e-21, Organism=Escherichia coli, GI1788761, Length=246, Percent_Identity=31.3008130081301, Blast_Score=96, Evalue=3e-21, Organism=Escherichia coli, GI1788644, Length=173, Percent_Identity=35.8381502890173, Blast_Score=95, Evalue=8e-21, Organism=Escherichia coli, GI87081834, Length=231, Percent_Identity=32.4675324675325, Blast_Score=92, Evalue=5e-20, Organism=Escherichia coli, GI1790467, Length=276, Percent_Identity=26.8115942028986, Blast_Score=91, Evalue=1e-19, Organism=Escherichia coli, GI1790162, Length=260, Percent_Identity=27.3076923076923, Blast_Score=91, Evalue=2e-19, Organism=Escherichia coli, GI1787105, Length=246, Percent_Identity=32.1138211382114, Blast_Score=91, Evalue=2e-19, Organism=Escherichia coli, GI1786872, Length=129, Percent_Identity=37.984496124031, Blast_Score=90, Evalue=3e-19, Organism=Escherichia coli, GI1786703, Length=234, Percent_Identity=30.3418803418803, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI1788450, Length=256, Percent_Identity=25.78125, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI1786253, Length=250, Percent_Identity=25.2, Blast_Score=79, Evalue=4e-16, Organism=Escherichia coli, GI1786563, Length=230, Percent_Identity=29.5652173913043, Blast_Score=78, Evalue=1e-15, Organism=Escherichia coli, GI1786319, Length=245, Percent_Identity=25.7142857142857, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1789873, Length=217, Percent_Identity=29.9539170506912, Blast_Score=77, Evalue=2e-15, Organism=Escherichia coli, GI1790739, Length=276, Percent_Identity=24.6376811594203, Blast_Score=73, Evalue=3e-14, Organism=Escherichia coli, GI1789864, Length=245, Percent_Identity=25.7142857142857, Blast_Score=72, Evalue=8e-14, Organism=Escherichia coli, GI1787164, Length=89, Percent_Identity=37.0786516853933, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI1790525, Length=253, Percent_Identity=29.6442687747036, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI1790534, Length=223, Percent_Identity=27.3542600896861, Blast_Score=70, Evalue=3e-13, Organism=Escherichia coli, GI1787182, Length=237, Percent_Identity=28.6919831223629, Blast_Score=68, Evalue=9e-13, Organism=Escherichia coli, GI1787972, Length=236, Percent_Identity=25.8474576271186, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1786345, Length=247, Percent_Identity=24.6963562753036, Blast_Score=64, Evalue=1e-11, Organism=Caenorhabditis elegans, GI193202349, Length=273, Percent_Identity=31.5018315018315, Blast_Score=95, Evalue=6e-20, Organism=Caenorhabditis elegans, GI115535101, Length=283, Percent_Identity=26.5017667844523, Blast_Score=85, Evalue=5e-17, Organism=Caenorhabditis elegans, GI17558664, Length=252, Percent_Identity=29.7619047619048, Blast_Score=82, Evalue=5e-16, Organism=Caenorhabditis elegans, GI17565938, Length=289, Percent_Identity=27.3356401384083, Blast_Score=79, Evalue=3e-15, Organism=Caenorhabditis elegans, GI71984940, Length=245, Percent_Identity=31.0204081632653, Blast_Score=78, Evalue=7e-15, Organism=Caenorhabditis elegans, GI193208177, Length=252, Percent_Identity=28.1746031746032, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17541710, Length=277, Percent_Identity=28.8808664259928, Blast_Score=74, Evalue=9e-14, Organism=Caenorhabditis elegans, GI212646699, Length=252, Percent_Identity=29.7619047619048, Blast_Score=74, Evalue=1e-13, Organism=Caenorhabditis elegans, GI25146777, Length=246, Percent_Identity=27.6422764227642, Blast_Score=70, Evalue=2e-12, Organism=Caenorhabditis elegans, GI71983510, Length=261, Percent_Identity=24.904214559387, Blast_Score=66, Evalue=3e-11, Organism=Caenorhabditis elegans, GI71983516, Length=261, Percent_Identity=24.904214559387, Blast_Score=66, Evalue=3e-11, Organism=Caenorhabditis elegans, GI71983523, Length=261, Percent_Identity=24.904214559387, Blast_Score=66, Evalue=3e-11, Organism=Saccharomyces cerevisiae, GI6324985, Length=307, Percent_Identity=25.7328990228013, Blast_Score=82, Evalue=2e-16, Organism=Drosophila melanogaster, GI24641565, Length=286, Percent_Identity=30.7692307692308, Blast_Score=86, Evalue=3e-17, Organism=Drosophila melanogaster, GI281363262, Length=281, Percent_Identity=28.1138790035587, Blast_Score=78, Evalue=9e-15, Organism=Drosophila melanogaster, GI24653245, Length=281, Percent_Identity=28.1138790035587, Blast_Score=78, Evalue=1e-14, Organism=Drosophila melanogaster, GI24659289, Length=256, Percent_Identity=27.34375, Blast_Score=75, Evalue=1e-13, Organism=Drosophila melanogaster, GI85726357, Length=270, Percent_Identity=26.6666666666667, Blast_Score=69, Evalue=4e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR010066 - InterPro: IPR013563 [H]
Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]
EC number: NA
Molecular weight: Translated: 41261; Mature: 41130
Theoretical pI: Translated: 8.05; Mature: 8.05
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSFVIKAENLKVWYPVRRSLLDVILRKPQLYVHAVDGISLEIKPGETYCLVGESGCGKST CCEEEEECCEEEEHHHHHHHHHHHHCCCCEEEEEECCEEEEEECCCEEEEEECCCCCCCH TGRALIRLVENAVVSGRVLFRPSEKTLEEIAKLAPQAIVDKEQGIVDIYKVPDKYMKPLR HHHHHHHHHHHHHHCCEEEECCCHHHHHHHHHHCHHHHHCCCCCEEEEEECCHHHHHHHH RELQIVFQDPFGSLNPRMKIGEILEEPLLIHGIGETYEERLEIVMKALEMVKLTPPEDFV HHHEEEEECCCCCCCCCHHHHHHHHCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCHHHH NRYPHQLSGGQRQRVSIAKALLLNPRFIVADEPVSMLDVSIRAEVLEILNELRDKHKLAQ HCCCHHCCCCCHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHH LFITHDLALARYVCDRIAVMYLGKIVEEAEADELINNPLHPYTKALISAIPEPDPSNRLK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCE TRYLPIKGEVTSAIHLPKGCRFRPRCLAYDENEQVRSLCEKEEPPLVEVKQGHKVACWLY EEEECCCCCCCCEEECCCCCCCCCCEECCCCCHHHHHHHHCCCCCEEEECCCCEEEEEEE AKK ECC >Mature Secondary Structure SFVIKAENLKVWYPVRRSLLDVILRKPQLYVHAVDGISLEIKPGETYCLVGESGCGKST CEEEEECCEEEEHHHHHHHHHHHHCCCCEEEEEECCEEEEEECCCEEEEEECCCCCCCH TGRALIRLVENAVVSGRVLFRPSEKTLEEIAKLAPQAIVDKEQGIVDIYKVPDKYMKPLR HHHHHHHHHHHHHHCCEEEECCCHHHHHHHHHHCHHHHHCCCCCEEEEEECCHHHHHHHH RELQIVFQDPFGSLNPRMKIGEILEEPLLIHGIGETYEERLEIVMKALEMVKLTPPEDFV HHHEEEEECCCCCCCCCHHHHHHHHCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCHHHH NRYPHQLSGGQRQRVSIAKALLLNPRFIVADEPVSMLDVSIRAEVLEILNELRDKHKLAQ HCCCHHCCCCCHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHH LFITHDLALARYVCDRIAVMYLGKIVEEAEADELINNPLHPYTKALISAIPEPDPSNRLK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCE TRYLPIKGEVTSAIHLPKGCRFRPRCLAYDENEQVRSLCEKEEPPLVEVKQGHKVACWLY EEEECCCCCCCCEEECCCCCCCCCCEECCCCCHHHHHHHHCCCCCEEEECCCCEEEEEEE AKK ECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; dipeptides [Periplasm]; H2O [C]
Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]