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The map label for this gene is hypD [C]

Identifier: 124027634

GI number: 124027634

Start: 745123

End: 746337

Strand: Reverse

Name: hypD [C]

Synonym: Hbut_0755

Alternate gene names: 124027634

Gene position: 746337-745123 (Counterclockwise)

Preceding gene: 124027635

Following gene: 124027633

Centisome position: 44.77

GC content: 57.04

Gene sequence:

>1215_bases
TTGGAGGACCCGTCAACCCTGGATAAGCAGGTTGTGAACCTCTACGGCCTCTGGAGGGTTGACAAGAAGGTTATTGACCG
GCTTGTAGAGCTTATACACCGAGTTGCGCCTATTGCTATTAGACGTGTCGGCGGCACCATCAAGATAATGGATTTCTGTG
GCACACATGAACACAGCATTGTCTGGAATGGAATCCGCAGCCTCATGCCGGAGGGTGTTGAGCTTGTCGCTGGGCCCGGC
TGCCCTGTCTGCATAACACCCGCCTACTACGTCGACATTGCGATAAAGTTTGCCCTAGAGGGGATCCGTGTTTACACCTA
CGGCGATGCATATCGGCTGCCTGGCTCGGGCCGTCCATTCGGCGATAAGGGACGTCCTCGTAGCCTAGAGGAGGCTCGTG
CTCTTGGCGGCGATGTGGTAGTGGTTTACAGCTTTATGGATGCTGTGAAGCATGCTAAGAGGGATGGCAAAGAGTCCGTG
TTTCTCGCGGTAGGGTTTGAGACCACGGCGCCTGCTGTAGCAGCGCCACTAGTTAACGGTGTTGTACCAGAAAACCTTAC
GATCATAAATGTGCACAGACTCACACCGCCAATACTCCGCTACACCTTTGAGCGTCACCGCAACGCCCCAATACGCGGTG
TTATAGCGCCAGGCCACGTCTCGGCCGTTATTGGTGCGAAGGCGTGGGAGTTCGTGCCGAGGGAATACGGTGTTCCCACT
GTTGTTGCAGGGTTTGAGGCCCATGATATACTCCTAGCAATATTCCACATTCTCGCCATGCTCGCTGAGGGGAGGCCACG
CCTCATAAACGAGTACAAGCGTGTAGTCCGCTGGGAGGGCAACACGGTGGCACAGCGCTACATCAATGAGTGCTGCGAAG
TCACCGATGCTGCGTGGCGCGGCCTAGGCTTTGTGCCACAGAGCGGCCTAGCCTTCCGCGACAAGTACCGCCGGTACGAC
GCCATGTACCAGTACGGGATAAAGGAGCTAACACCCGAAGAGTGGAGCTACGACCTTCCACCGGGCTGTCGCTGCGCCGA
GGTAACCCTGGGCCTCGCCAAGCCGACGGACTGCCCACTCTTCATGAAGGTATGTACGCCAGGTACACCCTACGGACCCT
GCATGGTCAGTATCGAGGGTACATGTAGCGTCTGGGCCCGCTTCGGCGGTGGAGGACTAGCAGATGAGATAGCGAGAGAG
CTGGGGCTCGCATAG

Upstream 100 bases:

>100_bases
AAGCGAACTATAAAAAGATGGCCTACACTTCCCCGTTTCACTCGTGTTTAGGTTTATATTGGCGAGTTGCAAGCTATCGC
GGTGTCCGGGGTTTGATGGC

Downstream 100 bases:

>100_bases
GGGTTGAAGCTATGGCTCACCTTCTCCTTTATACTGGTGGTTTTATCGGCCGCAGCGCCTATAGCACTGTTGACAAGCCC
TCTAAGTTGGAGGTGTAGCT

Product: hydrogenase expression/formation protein hypD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 404; Mature: 404

Protein sequence:

>404_residues
MEDPSTLDKQVVNLYGLWRVDKKVIDRLVELIHRVAPIAIRRVGGTIKIMDFCGTHEHSIVWNGIRSLMPEGVELVAGPG
CPVCITPAYYVDIAIKFALEGIRVYTYGDAYRLPGSGRPFGDKGRPRSLEEARALGGDVVVVYSFMDAVKHAKRDGKESV
FLAVGFETTAPAVAAPLVNGVVPENLTIINVHRLTPPILRYTFERHRNAPIRGVIAPGHVSAVIGAKAWEFVPREYGVPT
VVAGFEAHDILLAIFHILAMLAEGRPRLINEYKRVVRWEGNTVAQRYINECCEVTDAAWRGLGFVPQSGLAFRDKYRRYD
AMYQYGIKELTPEEWSYDLPPGCRCAEVTLGLAKPTDCPLFMKVCTPGTPYGPCMVSIEGTCSVWARFGGGGLADEIARE
LGLA

Sequences:

>Translated_404_residues
MEDPSTLDKQVVNLYGLWRVDKKVIDRLVELIHRVAPIAIRRVGGTIKIMDFCGTHEHSIVWNGIRSLMPEGVELVAGPG
CPVCITPAYYVDIAIKFALEGIRVYTYGDAYRLPGSGRPFGDKGRPRSLEEARALGGDVVVVYSFMDAVKHAKRDGKESV
FLAVGFETTAPAVAAPLVNGVVPENLTIINVHRLTPPILRYTFERHRNAPIRGVIAPGHVSAVIGAKAWEFVPREYGVPT
VVAGFEAHDILLAIFHILAMLAEGRPRLINEYKRVVRWEGNTVAQRYINECCEVTDAAWRGLGFVPQSGLAFRDKYRRYD
AMYQYGIKELTPEEWSYDLPPGCRCAEVTLGLAKPTDCPLFMKVCTPGTPYGPCMVSIEGTCSVWARFGGGGLADEIARE
LGLA
>Mature_404_residues
MEDPSTLDKQVVNLYGLWRVDKKVIDRLVELIHRVAPIAIRRVGGTIKIMDFCGTHEHSIVWNGIRSLMPEGVELVAGPG
CPVCITPAYYVDIAIKFALEGIRVYTYGDAYRLPGSGRPFGDKGRPRSLEEARALGGDVVVVYSFMDAVKHAKRDGKESV
FLAVGFETTAPAVAAPLVNGVVPENLTIINVHRLTPPILRYTFERHRNAPIRGVIAPGHVSAVIGAKAWEFVPREYGVPT
VVAGFEAHDILLAIFHILAMLAEGRPRLINEYKRVVRWEGNTVAQRYINECCEVTDAAWRGLGFVPQSGLAFRDKYRRYD
AMYQYGIKELTPEEWSYDLPPGCRCAEVTLGLAKPTDCPLFMKVCTPGTPYGPCMVSIEGTCSVWARFGGGGLADEIARE
LGLA

Specific function: Required For The Formation Of All Three Hydrogenase Isoenzymes. [C]

COG id: COG0409

COG function: function code O; Hydrogenase maturation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hypD family [H]

Homologues:

Organism=Escherichia coli, GI1789084, Length=376, Percent_Identity=35.9042553191489, Blast_Score=227, Evalue=1e-60,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002780 [H]

Pfam domain/function: PF01924 HypD [H]

EC number: NA

Molecular weight: Translated: 44548; Mature: 44548

Theoretical pI: Translated: 7.67; Mature: 7.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEDPSTLDKQVVNLYGLWRVDKKVIDRLVELIHRVAPIAIRRVGGTIKIMDFCGTHEHSI
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHH
VWNGIRSLMPEGVELVAGPGCPVCITPAYYVDIAIKFALEGIRVYTYGDAYRLPGSGRPF
HHHHHHHHCCCCCEEEECCCCCEEECCHHHHHHHHEEEECCEEEEEECCEEECCCCCCCC
GDKGRPRSLEEARALGGDVVVVYSFMDAVKHAKRDGKESVFLAVGFETTAPAVAAPLVNG
CCCCCCCCHHHHHHCCCCEEEHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHCC
VVPENLTIINVHRLTPPILRYTFERHRNAPIRGVIAPGHVSAVIGAKAWEFVPREYGVPT
CCCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHCHHHCCCCE
VVAGFEAHDILLAIFHILAMLAEGRPRLINEYKRVVRWEGNTVAQRYINECCEVTDAAWR
EEECCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
GLGFVPQSGLAFRDKYRRYDAMYQYGIKELTPEEWSYDLPPGCRCAEVTLGLAKPTDCPL
CCCCCCCCCCHHHHHHHHHHHHHHHCHHHCCCCCCCCCCCCCCEEEHEEEECCCCCCCCE
FMKVCTPGTPYGPCMVSIEGTCSVWARFGGGGLADEIARELGLA
EEEECCCCCCCCCEEEEECCCCEEHHHCCCCCHHHHHHHHHCCC
>Mature Secondary Structure
MEDPSTLDKQVVNLYGLWRVDKKVIDRLVELIHRVAPIAIRRVGGTIKIMDFCGTHEHSI
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHH
VWNGIRSLMPEGVELVAGPGCPVCITPAYYVDIAIKFALEGIRVYTYGDAYRLPGSGRPF
HHHHHHHHCCCCCEEEECCCCCEEECCHHHHHHHHEEEECCEEEEEECCEEECCCCCCCC
GDKGRPRSLEEARALGGDVVVVYSFMDAVKHAKRDGKESVFLAVGFETTAPAVAAPLVNG
CCCCCCCCHHHHHHCCCCEEEHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHCC
VVPENLTIINVHRLTPPILRYTFERHRNAPIRGVIAPGHVSAVIGAKAWEFVPREYGVPT
CCCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHCHHHCCCCE
VVAGFEAHDILLAIFHILAMLAEGRPRLINEYKRVVRWEGNTVAQRYINECCEVTDAAWR
EEECCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
GLGFVPQSGLAFRDKYRRYDAMYQYGIKELTPEEWSYDLPPGCRCAEVTLGLAKPTDCPL
CCCCCCCCCCHHHHHHHHHHHHHHHCHHHCCCCCCCCCCCCCCEEEHEEEECCCCCCCCE
FMKVCTPGTPYGPCMVSIEGTCSVWARFGGGGLADEIARELGLA
EEEECCCCCCCCCEEEEECCCCEEHHHCCCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]