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The map label for this gene is pcbC [H]

Identifier: 123968896

GI number: 123968896

Start: 1133998

End: 1135056

Strand: Reverse

Name: pcbC [H]

Synonym: A9601_13631

Alternate gene names: 123968896

Gene position: 1135056-1133998 (Counterclockwise)

Preceding gene: 123968897

Following gene: 123968895

Centisome position: 67.97

GC content: 37.39

Gene sequence:

>1059_bases
GTGTTACAAACTTACGGAAAATCTGATGTCACCTATGACTGGTACGCAGGGAATTCTGGTGTTGTTGGCCGTTCAGGTAA
ATTCATAGCTGCTCATGCTGCCCATGCAGGCCTAATGATGTTTTGGGCAGGAGCTTTTGGATTATTTGAATTGGCTCGTT
ACGACGCCAGTATTCCAATGGGCGCACAGAAAGCAATTGTTTTGCCTCACCTAGCGGGTATTGGAATTGGTGGCATTGAA
AATGGTGTTATTACTGAACCATATGGAATAGTTGTAATTTGCACATTACATCTAATTTTCTCAGCAGTATTGGGTGCTGG
TGGATTATTACACTCCAATAAATTTGCAGGTGATCTTGGAGACTATCCAGAAAATAGTAAGCCACAAAAATTTGATTTTG
AATGGGATGATCCAGATAAATTAACTTTTATTCTTGGTCATCATCTAATCTTTCTTGGACTTGGAGCAATTATGTTCGTT
GAATGGGCTCGAATTCATGGAATTTACGACCCAGCAATAGGATCCACGAGACAAGTTATTTACAACTTAGATATTGCCGC
TATCTGGAATCATCAATTTGATTTTTTAAAAATAGATAGTTTGGAAGATGTTATGGGAGGACATGCTTTCCTAGCTTTCC
TCGAAATAATTGGAGGAGTTTTCCATATTTGTACTAAACAATTTGGAGAATATACAGAATTTAAAGGAAAAGGATTACTT
GGCGCTGAGGCAATCTTGTCATACTCAGTTGTTGGTGTTTCTTATATGGCTTTTGTTGCTGCTTTTTGGTGTGCTTCTAA
TACAACTATATATCCAGTTGATCTATATGGAGAACCCTTGAAGCTTCAATTTGAATTCGCCCCTTATTTTACTGATACAG
TAGATTTAGGTTCAGGAGCGTACAGCTCAAGAGCTTGGCTTGCTAATACTCATTTTTATTTGGGTTTCTTTTTCTTACAA
GGTCATCTTTGGCACGCACTAAGAGCAATGGGATTTGACTTTAAGAAAATTGGTCAAGCTTTTGATAATATTGAAAATAC
AAAAATTACTCAAAACTAG

Upstream 100 bases:

>100_bases
TCACAATATGTTTTTTTTACATAAGTAATTAAATCTGTAAAGAACATGTAAAAACAATTCTGATAAGCAATATGCTCAAT
GTGCTGTTTACTTAAATCAA

Downstream 100 bases:

>100_bases
TTTAATCTAATAAAAAACCTCTCCTCTAACAGGGAGGTTTTTTTTTGTAGAATTGTTCAAAATATTTAAAAAATTAATGG
ATAATCCAAAAGAAATTAAT

Product: chlorophyll a/b binding light harvesting protein PcbD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 352; Mature: 352

Protein sequence:

>352_residues
MLQTYGKSDVTYDWYAGNSGVVGRSGKFIAAHAAHAGLMMFWAGAFGLFELARYDASIPMGAQKAIVLPHLAGIGIGGIE
NGVITEPYGIVVICTLHLIFSAVLGAGGLLHSNKFAGDLGDYPENSKPQKFDFEWDDPDKLTFILGHHLIFLGLGAIMFV
EWARIHGIYDPAIGSTRQVIYNLDIAAIWNHQFDFLKIDSLEDVMGGHAFLAFLEIIGGVFHICTKQFGEYTEFKGKGLL
GAEAILSYSVVGVSYMAFVAAFWCASNTTIYPVDLYGEPLKLQFEFAPYFTDTVDLGSGAYSSRAWLANTHFYLGFFFLQ
GHLWHALRAMGFDFKKIGQAFDNIENTKITQN

Sequences:

>Translated_352_residues
MLQTYGKSDVTYDWYAGNSGVVGRSGKFIAAHAAHAGLMMFWAGAFGLFELARYDASIPMGAQKAIVLPHLAGIGIGGIE
NGVITEPYGIVVICTLHLIFSAVLGAGGLLHSNKFAGDLGDYPENSKPQKFDFEWDDPDKLTFILGHHLIFLGLGAIMFV
EWARIHGIYDPAIGSTRQVIYNLDIAAIWNHQFDFLKIDSLEDVMGGHAFLAFLEIIGGVFHICTKQFGEYTEFKGKGLL
GAEAILSYSVVGVSYMAFVAAFWCASNTTIYPVDLYGEPLKLQFEFAPYFTDTVDLGSGAYSSRAWLANTHFYLGFFFLQ
GHLWHALRAMGFDFKKIGQAFDNIENTKITQN
>Mature_352_residues
MLQTYGKSDVTYDWYAGNSGVVGRSGKFIAAHAAHAGLMMFWAGAFGLFELARYDASIPMGAQKAIVLPHLAGIGIGGIE
NGVITEPYGIVVICTLHLIFSAVLGAGGLLHSNKFAGDLGDYPENSKPQKFDFEWDDPDKLTFILGHHLIFLGLGAIMFV
EWARIHGIYDPAIGSTRQVIYNLDIAAIWNHQFDFLKIDSLEDVMGGHAFLAFLEIIGGVFHICTKQFGEYTEFKGKGLL
GAEAILSYSVVGVSYMAFVAAFWCASNTTIYPVDLYGEPLKLQFEFAPYFTDTVDLGSGAYSSRAWLANTHFYLGFFFLQ
GHLWHALRAMGFDFKKIGQAFDNIENTKITQN

Specific function: The antenna complex functions as a light receptor, it captures and delivers excitation energy to photosystems II and I. The Prochlorales pcb genes are not related to the higher plant LHCs [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the psbB/psbC family. IsiA/pcb subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000932 [H]

Pfam domain/function: PF00421 PSII [H]

EC number: NA

Molecular weight: Translated: 38783; Mature: 38783

Theoretical pI: Translated: 5.83; Mature: 5.83

Prosite motif: PS00639 THIOL_PROTEASE_HIS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLQTYGKSDVTYDWYAGNSGVVGRSGKFIAAHAAHAGLMMFWAGAFGLFELARYDASIPM
CCCCCCCCCCEEEEECCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
GAQKAIVLPHLAGIGIGGIENGVITEPYGIVVICTLHLIFSAVLGAGGLLHSNKFAGDLG
CCCCEEEEHHHHCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHCCCCCEECCCCCCCCC
DYPENSKPQKFDFEWDDPDKLTFILGHHLIFLGLGAIMFVEWARIHGIYDPAIGSTRQVI
CCCCCCCCCEECCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEE
YNLDIAAIWNHQFDFLKIDSLEDVMGGHAFLAFLEIIGGVFHICTKQFGEYTEFKGKGLL
EECCEEEEECCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCC
GAEAILSYSVVGVSYMAFVAAFWCASNTTIYPVDLYGEPLKLQFEFAPYFTDTVDLGSGA
HHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEECCCCCCEEECCCCC
YSSRAWLANTHFYLGFFFLQGHLWHALRAMGFDFKKIGQAFDNIENTKITQN
CCCCEEEECCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCEECCC
>Mature Secondary Structure
MLQTYGKSDVTYDWYAGNSGVVGRSGKFIAAHAAHAGLMMFWAGAFGLFELARYDASIPM
CCCCCCCCCCEEEEECCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
GAQKAIVLPHLAGIGIGGIENGVITEPYGIVVICTLHLIFSAVLGAGGLLHSNKFAGDLG
CCCCEEEEHHHHCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHCCCCCEECCCCCCCCC
DYPENSKPQKFDFEWDDPDKLTFILGHHLIFLGLGAIMFVEWARIHGIYDPAIGSTRQVI
CCCCCCCCCEECCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEE
YNLDIAAIWNHQFDFLKIDSLEDVMGGHAFLAFLEIIGGVFHICTKQFGEYTEFKGKGLL
EECCEEEEECCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCC
GAEAILSYSVVGVSYMAFVAAFWCASNTTIYPVDLYGEPLKLQFEFAPYFTDTVDLGSGA
HHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEECCCCCCEEECCCCC
YSSRAWLANTHFYLGFFFLQGHLWHALRAMGFDFKKIGQAFDNIENTKITQN
CCCCEEEECCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10725393; 12917486; 11575723 [H]