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The map label for this gene is pbsY [H]

Identifier: 123968756

GI number: 123968756

Start: 1041173

End: 1041289

Strand: Reverse

Name: pbsY [H]

Synonym: A9601_12231

Alternate gene names: 123968756

Gene position: 1041289-1041173 (Counterclockwise)

Preceding gene: 123968758

Following gene: 123968755

Centisome position: 62.36

GC content: 39.32

Gene sequence:

>117_bases
ATGCTCAGAACAATCGTAGTTTTTGCACCCATTATTGCGGCTTTAGCTTGGGTCATATTCAACATACAAAAACCAGCAAG
AGAGCAATTCAATAGGGACTTTTTGGGCAAGGATTAA

Upstream 100 bases:

>100_bases
TAGAAAAACAATTCTTAACTAATGAAATAAAAAATTAAAATTTCTCTCTAAATTTACAGTTAAAAGTTAAAATAATCTAA
TAAATAATAAGATTTCTAAA

Downstream 100 bases:

>100_bases
TCCAATTTGTCATATAAACAAGTAATAATTATTGGAGCTGGTCTCGCAGGATCAGAAGCAGCTTGGCAAGTTGCAAGTTC
TGGTGTTCCAGTTAAATTAG

Product: photosystem II protein Y

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 38; Mature: 38

Protein sequence:

>38_residues
MLRTIVVFAPIIAALAWVIFNIQKPAREQFNRDFLGKD

Sequences:

>Translated_38_residues
MLRTIVVFAPIIAALAWVIFNIQKPAREQFNRDFLGKD
>Mature_38_residues
MLRTIVVFAPIIAALAWVIFNIQKPAREQFNRDFLGKD

Specific function: Manganese-binding polypeptide with L-arginine metabolizing enzyme activity. Component of the core of photosystem II [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Single-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the psbY family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009388 [H]

Pfam domain/function: PF06298 PsbY [H]

EC number: NA

Molecular weight: Translated: 4403; Mature: 4403

Theoretical pI: Translated: 10.76; Mature: 10.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRTIVVFAPIIAALAWVIFNIQKPAREQFNRDFLGKD
CCHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCC
>Mature Secondary Structure
MLRTIVVFAPIIAALAWVIFNIQKPAREQFNRDFLGKD
CCHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12917642 [H]