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The map label for this gene is xisA [H]

Identifier: 123968115

GI number: 123968115

Start: 505073

End: 506242

Strand: Reverse

Name: xisA [H]

Synonym: A9601_05801

Alternate gene names: 123968115

Gene position: 506242-505073 (Counterclockwise)

Preceding gene: 123968119

Following gene: 123968114

Centisome position: 30.32

GC content: 30.6

Gene sequence:

>1170_bases
ATGAACTTAATTCAGGAAATTAATAATGTCAATGATAAATTTGCTACTCAAGGAAGCAAGCTTAAAATTGAGAAGAGAGG
AGAGAAATTAAATATTCGTGGTTCACTACCCTCCAAAGAAGATAACAATAACTTTAAAATTCAAAGAATATCTCTTGGTT
TAAACGCTGATATTTCTGGATTAGAGGAGGCCAAAAAAAAATTACAATTAATCAATTTGCAATTGGAATTGAATCAATTT
GATTGGATTAACTGGATTGGCAACCCTTATAAAAAGCAAATAAAAGATGGTTCTGAATTCCCAAATAGATTAAATCAATT
TGAAGAATTTTTTTTTAAAGAAAACAAAAGTGATTTTCGAACCAGCACTAGAAAAACTACTTGGAAAAGTTCTTACAAAC
CATATATGAAAAGAATCCTAAATATTTACAATGATTATGAAAATGAATCTTTAGAAAGAATATTTCAAAAAACACTTGAA
AGTTACAAGGAAGGTAGCAGAAGTAGGAAACAATGCGCTACTTCTCTTAGTGTTTTGGCTAAGTTTTTGGAAATTAAACT
ACCAGAGGATTGGAAATTAAATTCTAGAGGATATGGTCTGAACAAAGCAGGATTTAGGGATCTGCCTAAAGACGAGTTAA
TTGTGAAACTTTGGGAGACAATCCCAAACAAATCTTGGAAATTTGTTTTTGGTTTGATGGCTACATACGGATTAAGGAAT
CATGAAGTATTTTTTTGTGATTTAAGTTCTCTAACTAATTTTGGGGACAAAATTATTAGAGTTTTACCTACTACTAAAAC
TGGGGAGCATCAAGTTTGGCCATTTCATCCTGAATGGGTTGAAAAGTTCGAATTATCAAAACTTGGTGAAAATCCAGAAC
TACTACCAAATATTAATACAGACCTTAAAATTACAACTTTACAAAATATTGGAAAAAAAATTACAGATCAGTTTAAGCGT
TACTCTTTACAAATAAAACCTTATGATCTAAGGCATGCATGGGCAGTAAGAACAATTTTTTATGATTTGCCTGATACTGT
TGCTGCCAGAATGATGGGACATTCGGTTAGTTTACATACTCAAACTTATCATCACTGGATTACTAAAAGAGATCAACAAC
AGGCAGTAAATAATGCACTTTTAAAAGTTAAAAGAGCTAAAAATATTTAA

Upstream 100 bases:

>100_bases
CTAAATTCATTAGTAAGACGCCTATTTTATCCATCTTAAAATTTATGGAGATTGAAAATCAACATACAAAACGTCATTAT
ATGGACAATTATATAAGTAA

Downstream 100 bases:

>100_bases
AGATTTATAATTATTTAATAAAAATTTGGATCATATGCAAGAAAAACCTTCATCTTCCGAGAAAATATTTAACCTCGATA
ATCAAGCAAATAAACTTGGA

Product: phage integrase family protein

Products: NA

Alternate protein names: NifD element site-specific recombinase [H]

Number of amino acids: Translated: 389; Mature: 389

Protein sequence:

>389_residues
MNLIQEINNVNDKFATQGSKLKIEKRGEKLNIRGSLPSKEDNNNFKIQRISLGLNADISGLEEAKKKLQLINLQLELNQF
DWINWIGNPYKKQIKDGSEFPNRLNQFEEFFFKENKSDFRTSTRKTTWKSSYKPYMKRILNIYNDYENESLERIFQKTLE
SYKEGSRSRKQCATSLSVLAKFLEIKLPEDWKLNSRGYGLNKAGFRDLPKDELIVKLWETIPNKSWKFVFGLMATYGLRN
HEVFFCDLSSLTNFGDKIIRVLPTTKTGEHQVWPFHPEWVEKFELSKLGENPELLPNINTDLKITTLQNIGKKITDQFKR
YSLQIKPYDLRHAWAVRTIFYDLPDTVAARMMGHSVSLHTQTYHHWITKRDQQQAVNNALLKVKRAKNI

Sequences:

>Translated_389_residues
MNLIQEINNVNDKFATQGSKLKIEKRGEKLNIRGSLPSKEDNNNFKIQRISLGLNADISGLEEAKKKLQLINLQLELNQF
DWINWIGNPYKKQIKDGSEFPNRLNQFEEFFFKENKSDFRTSTRKTTWKSSYKPYMKRILNIYNDYENESLERIFQKTLE
SYKEGSRSRKQCATSLSVLAKFLEIKLPEDWKLNSRGYGLNKAGFRDLPKDELIVKLWETIPNKSWKFVFGLMATYGLRN
HEVFFCDLSSLTNFGDKIIRVLPTTKTGEHQVWPFHPEWVEKFELSKLGENPELLPNINTDLKITTLQNIGKKITDQFKR
YSLQIKPYDLRHAWAVRTIFYDLPDTVAARMMGHSVSLHTQTYHHWITKRDQQQAVNNALLKVKRAKNI
>Mature_389_residues
MNLIQEINNVNDKFATQGSKLKIEKRGEKLNIRGSLPSKEDNNNFKIQRISLGLNADISGLEEAKKKLQLINLQLELNQF
DWINWIGNPYKKQIKDGSEFPNRLNQFEEFFFKENKSDFRTSTRKTTWKSSYKPYMKRILNIYNDYENESLERIFQKTLE
SYKEGSRSRKQCATSLSVLAKFLEIKLPEDWKLNSRGYGLNKAGFRDLPKDELIVKLWETIPNKSWKFVFGLMATYGLRN
HEVFFCDLSSLTNFGDKIIRVLPTTKTGEHQVWPFHPEWVEKFELSKLGENPELLPNINTDLKITTLQNIGKKITDQFKR
YSLQIKPYDLRHAWAVRTIFYDLPDTVAARMMGHSVSLHTQTYHHWITKRDQQQAVNNALLKVKRAKNI

Specific function: Essential for DNA excision. Site specific recombinase necessary for the excision of the 11 kb nifD element during heterocyst differentiation [H]

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xisA/xisC recombinase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 45718; Mature: 45718

Theoretical pI: Translated: 10.18; Mature: 10.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLIQEINNVNDKFATQGSKLKIEKRGEKLNIRGSLPSKEDNNNFKIQRISLGLNADISG
CCHHHHHHCCCHHHHCCCCEEEEEECCCEEEEECCCCCCCCCCCEEEEEEEECCCCCCCH
LEEAKKKLQLINLQLELNQFDWINWIGNPYKKQIKDGSEFPNRLNQFEEFFFKENKSDFR
HHHHHHHHHHEEEEEECCCCHHHHHCCCHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHH
TSTRKTTWKSSYKPYMKRILNIYNDYENESLERIFQKTLESYKEGSRSRKQCATSLSVLA
HHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
KFLEIKLPEDWKLNSRGYGLNKAGFRDLPKDELIVKLWETIPNKSWKFVFGLMATYGLRN
HHHHCCCCCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCC
HEVFFCDLSSLTNFGDKIIRVLPTTKTGEHQVWPFHPEWVEKFELSKLGENPELLPNINT
CEEEEEEHHHHHHHHHHHEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC
DLKITTLQNIGKKITDQFKRYSLQIKPYDLRHAWAVRTIFYDLPDTVAARMMGHSVSLHT
CEEEEEHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHCCCHHHHHHHHCCCEEEEH
QTYHHWITKRDQQQAVNNALLKVKRAKNI
HHHHHHHCCCHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNLIQEINNVNDKFATQGSKLKIEKRGEKLNIRGSLPSKEDNNNFKIQRISLGLNADISG
CCHHHHHHCCCHHHHCCCCEEEEEECCCEEEEECCCCCCCCCCCEEEEEEEECCCCCCCH
LEEAKKKLQLINLQLELNQFDWINWIGNPYKKQIKDGSEFPNRLNQFEEFFFKENKSDFR
HHHHHHHHHHEEEEEECCCCHHHHHCCCHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHH
TSTRKTTWKSSYKPYMKRILNIYNDYENESLERIFQKTLESYKEGSRSRKQCATSLSVLA
HHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
KFLEIKLPEDWKLNSRGYGLNKAGFRDLPKDELIVKLWETIPNKSWKFVFGLMATYGLRN
HHHHCCCCCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCC
HEVFFCDLSSLTNFGDKIIRVLPTTKTGEHQVWPFHPEWVEKFELSKLGENPELLPNINT
CEEEEEEHHHHHHHHHHHEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC
DLKITTLQNIGKKITDQFKRYSLQIKPYDLRHAWAVRTIFYDLPDTVAARMMGHSVSLHT
CEEEEEHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHCCCHHHHHHHHCCCEEEEH
QTYHHWITKRDQQQAVNNALLKVKRAKNI
HHHHHHHCCCHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 3006922; 11759840; 3144039 [H]