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The map label for this gene is csd [H]

Identifier: 123968002

GI number: 123968002

Start: 404775

End: 405950

Strand: Reverse

Name: csd [H]

Synonym: A9601_04651

Alternate gene names: 123968002

Gene position: 405950-404775 (Counterclockwise)

Preceding gene: 123968003

Following gene: 123967997

Centisome position: 24.31

GC content: 29.42

Gene sequence:

>1176_bases
ATGAGAAATAATCTAAGAGATCAAATACCCGCATTAAAAAATAAGTATTATTTCAACTATGGCGGTCAAGGACCATTACC
AAAATCTTCTCTAGAAGCAATAGTTAAAACTTGGGAGATTATCCAAGATTTAGGACCATTTACCAATGATATGTGGCCTT
TTATTTACAAAGAAATATTGACCACAAAAAGAATCATTGCGCAAAAATTAGGTGTCAATTCAAAGAATGTAGCTTTTACC
GAAAATATCTCTTCCGGTATGATTTTGCCCTTTTGGGGAATAAAAGTAAAAGAGGGAGAAGAGTTGTTAATAAGTGACTG
TGAACATCCTGGAGTAGTGGCTGCAAGTCGAGAATTTTGCAGAAGAAATAAATTAATATTCAAAATTTTGCCAATCCAAA
AAATTAAAAATCTAAACGACGAAAATATAATTTTAGAGATTTTGAAAAATCTAAATAGTAAGACTAAGATCCTAATTATT
TCTCATATCTTATGGAACTTTGGATATAAAATTCCTTTAAAAGAAATTTCTATCGAATTAAAAAATAATCGAGAAAACTC
TTATTTACTTGTTGATGGTGCTCAAACCTTTGGGCATATAAATATTGAAAAAGAAGTTTTTTATTCTGATTTATATTCAA
TAACTTCTCACAAATGGGCATGTGGACCAGAAGGACTTGGAGCCATTTATGTCTCAGATAGATTTATTCGTGAAACAGAT
CCAACAATAATTGGTTGGAAATCATTAAAAAAAGAACAAGGCATTTATGAGCCTTCAGATAATCTTTTTCATGATGATGC
AAGGAAATTTGAAATAGCTACCTCTTGTATTCCTTTACTTGCTGGGCTACGGAATTCTTTAGATCTTTTGGATAAAGACT
GCCATGAAAAAGAAAAAAACAAAAATATCAAAAAATTAAGTGGAAAACTTTGGGATGAATTAAATCAATCAAAGGGTGTT
GAATTAGTTTTAGAAAAAAAATATTTAAATGGGATTGTTAGTTTTAATATCGAAAATATTAAAGATAAGGATAAATATGT
AAAGAAACTTGGAGAAAAGAAAATTTGGATTAGAGTTTTAGAAGATCCAAAATGGTTTAGAGCATGCGTACATCAAATGA
CTACAGAAGCTGAGATTGATTTACTTGCTAGAGAAATAAAAAAAATATTGACTTAA

Upstream 100 bases:

>100_bases
TGAACCTTGGAAAGTAATAGAGGATATTGAATTTAGAACAGTAACTTTAGTGGGCAATATTTAAAAAAATTCAAGAGTTG
AAAATATAATATAAATTTCT

Downstream 100 bases:

>100_bases
AGATCTATTGATACAAAAAAATTTAGTTTACCAAGGTATCTCCGAGTTGTCCCATGCAATAAATTTTCCTGTAGATTCTG
GTGATTGATTTTTAATAATA

Product: putative L-cysteine/cystine lyase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 391; Mature: 391

Protein sequence:

>391_residues
MRNNLRDQIPALKNKYYFNYGGQGPLPKSSLEAIVKTWEIIQDLGPFTNDMWPFIYKEILTTKRIIAQKLGVNSKNVAFT
ENISSGMILPFWGIKVKEGEELLISDCEHPGVVAASREFCRRNKLIFKILPIQKIKNLNDENIILEILKNLNSKTKILII
SHILWNFGYKIPLKEISIELKNNRENSYLLVDGAQTFGHINIEKEVFYSDLYSITSHKWACGPEGLGAIYVSDRFIRETD
PTIIGWKSLKKEQGIYEPSDNLFHDDARKFEIATSCIPLLAGLRNSLDLLDKDCHEKEKNKNIKKLSGKLWDELNQSKGV
ELVLEKKYLNGIVSFNIENIKDKDKYVKKLGEKKIWIRVLEDPKWFRACVHQMTTEAEIDLLAREIKKILT

Sequences:

>Translated_391_residues
MRNNLRDQIPALKNKYYFNYGGQGPLPKSSLEAIVKTWEIIQDLGPFTNDMWPFIYKEILTTKRIIAQKLGVNSKNVAFT
ENISSGMILPFWGIKVKEGEELLISDCEHPGVVAASREFCRRNKLIFKILPIQKIKNLNDENIILEILKNLNSKTKILII
SHILWNFGYKIPLKEISIELKNNRENSYLLVDGAQTFGHINIEKEVFYSDLYSITSHKWACGPEGLGAIYVSDRFIRETD
PTIIGWKSLKKEQGIYEPSDNLFHDDARKFEIATSCIPLLAGLRNSLDLLDKDCHEKEKNKNIKKLSGKLWDELNQSKGV
ELVLEKKYLNGIVSFNIENIKDKDKYVKKLGEKKIWIRVLEDPKWFRACVHQMTTEAEIDLLAREIKKILT
>Mature_391_residues
MRNNLRDQIPALKNKYYFNYGGQGPLPKSSLEAIVKTWEIIQDLGPFTNDMWPFIYKEILTTKRIIAQKLGVNSKNVAFT
ENISSGMILPFWGIKVKEGEELLISDCEHPGVVAASREFCRRNKLIFKILPIQKIKNLNDENIILEILKNLNSKTKILII
SHILWNFGYKIPLKEISIELKNNRENSYLLVDGAQTFGHINIEKEVFYSDLYSITSHKWACGPEGLGAIYVSDRFIRETD
PTIIGWKSLKKEQGIYEPSDNLFHDDARKFEIATSCIPLLAGLRNSLDLLDKDCHEKEKNKNIKKLSGKLWDELNQSKGV
ELVLEKKYLNGIVSFNIENIKDKDKYVKKLGEKKIWIRVLEDPKWFRACVHQMTTEAEIDLLAREIKKILT

Specific function: Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine [H]

COG id: COG0520

COG function: function code E; Selenocysteine lyase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. Csd subfamily [H]

Homologues:

Organism=Escherichia coli, GI1787970, Length=339, Percent_Identity=23.598820058997, Blast_Score=72, Evalue=7e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000192
- InterPro:   IPR020578
- InterPro:   IPR010970
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF00266 Aminotran_5 [H]

EC number: =2.8.1.7 [H]

Molecular weight: Translated: 45171; Mature: 45171

Theoretical pI: Translated: 9.16; Mature: 9.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRNNLRDQIPALKNKYYFNYGGQGPLPKSSLEAIVKTWEIIQDLGPFTNDMWPFIYKEIL
CCCCHHHHHHHHHCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
TTKRIIAQKLGVNSKNVAFTENISSGMILPFWGIKVKEGEELLISDCEHPGVVAASREFC
HHHHHHHHHHCCCCCCEEEECCCCCCEEEEEECEEECCCCHHHHCCCCCCCEEHHHHHHH
RRNKLIFKILPIQKIKNLNDENIILEILKNLNSKTKILIISHILWNFGYKIPLKEISIEL
HCCCEEEEEECHHHHCCCCCCHHHHHHHHCCCCCCEEEEHHHHHHHCCCCCCHHHEEEEE
KNNRENSYLLVDGAQTFGHINIEKEVFYSDLYSITSHKWACGPEGLGAIYVSDRFIRETD
ECCCCCCEEEEECCCHHCEECCHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCEECCCC
PTIIGWKSLKKEQGIYEPSDNLFHDDARKFEIATSCIPLLAGLRNSLDLLDKDCHEKEKN
CCEEEHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
KNIKKLSGKLWDELNQSKGVELVLEKKYLNGIVSFNIENIKDKDKYVKKLGEKKIWIRVL
CCHHHHHHHHHHHHHHCCCCEEEEEHHHHCCEEEECCCCCCHHHHHHHHHCCCEEEEEEE
EDPKWFRACVHQMTTEAEIDLLAREIKKILT
CCCHHHHHHHHHHCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MRNNLRDQIPALKNKYYFNYGGQGPLPKSSLEAIVKTWEIIQDLGPFTNDMWPFIYKEIL
CCCCHHHHHHHHHCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
TTKRIIAQKLGVNSKNVAFTENISSGMILPFWGIKVKEGEELLISDCEHPGVVAASREFC
HHHHHHHHHHCCCCCCEEEECCCCCCEEEEEECEEECCCCHHHHCCCCCCCEEHHHHHHH
RRNKLIFKILPIQKIKNLNDENIILEILKNLNSKTKILIISHILWNFGYKIPLKEISIEL
HCCCEEEEEECHHHHCCCCCCHHHHHHHHCCCCCCEEEEHHHHHHHCCCCCCHHHEEEEE
KNNRENSYLLVDGAQTFGHINIEKEVFYSDLYSITSHKWACGPEGLGAIYVSDRFIRETD
ECCCCCCEEEEECCCHHCEECCHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCEECCCC
PTIIGWKSLKKEQGIYEPSDNLFHDDARKFEIATSCIPLLAGLRNSLDLLDKDCHEKEKN
CCEEEHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
KNIKKLSGKLWDELNQSKGVELVLEKKYLNGIVSFNIENIKDKDKYVKKLGEKKIWIRVL
CCHHHHHHHHHHHHHHCCCCEEEEEHHHHCCEEEECCCCCCHHHHHHHHHCCCEEEEEEE
EDPKWFRACVHQMTTEAEIDLLAREIKKILT
CCCHHHHHHHHHHCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]