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The map label for this gene is rci [H]

Identifier: 123967974

GI number: 123967974

Start: 379721

End: 380686

Strand: Reverse

Name: rci [H]

Synonym: A9601_04371

Alternate gene names: 123967974

Gene position: 380686-379721 (Counterclockwise)

Preceding gene: 123967985

Following gene: 123967973

Centisome position: 22.8

GC content: 43.27

Gene sequence:

>966_bases
ATGGCAACAATCAGAAGAAGCGGCAGCGGCTGGCAGGTCCTTATCAGAAGGAAGAATTATGTAGGCCCGAGGTCCAGAAA
TTTTCTTTCCAGAGATCTGGCTGAATCCTGGGCAGATGCAGTCGAAGAGAGAACAAAAAAGGTTTTAAATGACACTCCCG
TCACCCTGGGAGAGGCAATCAATGACTATATAAATGGTCCATTACTTCTGCACCGCAGTGCGGAGAATGAAAAATATCCT
CTCAGGGTTACTGCAGAAAGCTGGCTGGGAGATATTCCACTAAGTGATCTGCAGATTAAGCATTTTGCAGTCTGGAGAGA
TGAACGATTACTGAAGGTGAAACCGAATACAGTTATGCGGGAACTGAGGATATTAAGAGTATTGATTGACTGGGCAAGAG
ATGAAAGAGGAGCGGAAATAAAAGATAACCCCGCAAGGCAACTGAGAGTGAGAGGGACAGGAGATGCAAGAGCTCCTTTT
TTAACGAATGAAGATGAAAAAAGACTCCTGTTTGAACTGTCGCAGATGTCCAACCAAAATCATCTGAGACTCACAAAGCT
TGCACTGACAACTGGCTTCCGCCGCTCCGAACTTTTGAGCCTGACCTGGAGAAATATAGATCTGAAGAAAAAATTACTCT
ATATATATAGAAAGAATTGTGCCGCAATAGATAATTCATCCGGAATGAGGCTTGTTCCTTTCCCTGAAAAGGCGCAGAAG
ATCCTTGAGGAATTACAGGGAAGAGATGGGAAAGTTATAGAACTTTCAAAAGGTGCTGCAAGAAATGGATTTGATAAAGC
CCGAAAAAAAGCAGGACTTGAAACTCTCAGATTTCATGATCTAAGACATATAGCCATAAGCAGAATGTGGCGTTCGGGAA
TGAGTGCCCTGGAGATAAGTGCATGCAGCGGCCACAGAGATATAAAAATGTTGATGCGCTACAGCCATTTTCAACTTTCC
ATATAA

Upstream 100 bases:

>100_bases
CACAAAAAAATTATTCAGAAGTGGACGTCCGTTTTCGGGTCCACTTTTCTGTTTTAAAGGCGGATATCTGGAGGTGCATC
ACACAAACGATGGCACCGAA

Downstream 100 bases:

>100_bases
ATCAACAGTCAGTCCCCCATAGGGGGGTTATTGCAGGTGATGGAGCGTATAAAACCTGTAAAGAAATTTATGATTAATTT
TTAGAATATGGCTTCTAAAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 321; Mature: 320

Protein sequence:

>321_residues
MATIRRSGSGWQVLIRRKNYVGPRSRNFLSRDLAESWADAVEERTKKVLNDTPVTLGEAINDYINGPLLLHRSAENEKYP
LRVTAESWLGDIPLSDLQIKHFAVWRDERLLKVKPNTVMRELRILRVLIDWARDERGAEIKDNPARQLRVRGTGDARAPF
LTNEDEKRLLFELSQMSNQNHLRLTKLALTTGFRRSELLSLTWRNIDLKKKLLYIYRKNCAAIDNSSGMRLVPFPEKAQK
ILEELQGRDGKVIELSKGAARNGFDKARKKAGLETLRFHDLRHIAISRMWRSGMSALEISACSGHRDIKMLMRYSHFQLS
I

Sequences:

>Translated_321_residues
MATIRRSGSGWQVLIRRKNYVGPRSRNFLSRDLAESWADAVEERTKKVLNDTPVTLGEAINDYINGPLLLHRSAENEKYP
LRVTAESWLGDIPLSDLQIKHFAVWRDERLLKVKPNTVMRELRILRVLIDWARDERGAEIKDNPARQLRVRGTGDARAPF
LTNEDEKRLLFELSQMSNQNHLRLTKLALTTGFRRSELLSLTWRNIDLKKKLLYIYRKNCAAIDNSSGMRLVPFPEKAQK
ILEELQGRDGKVIELSKGAARNGFDKARKKAGLETLRFHDLRHIAISRMWRSGMSALEISACSGHRDIKMLMRYSHFQLS
I
>Mature_320_residues
ATIRRSGSGWQVLIRRKNYVGPRSRNFLSRDLAESWADAVEERTKKVLNDTPVTLGEAINDYINGPLLLHRSAENEKYPL
RVTAESWLGDIPLSDLQIKHFAVWRDERLLKVKPNTVMRELRILRVLIDWARDERGAEIKDNPARQLRVRGTGDARAPFL
TNEDEKRLLFELSQMSNQNHLRLTKLALTTGFRRSELLSLTWRNIDLKKKLLYIYRKNCAAIDNSSGMRLVPFPEKAQKI
LEELQGRDGKVIELSKGAARNGFDKARKKAGLETLRFHDLRHIAISRMWRSGMSALEISACSGHRDIKMLMRYSHFQLSI

Specific function: Shufflon-specific DNA recombinase [H]

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1786748, Length=228, Percent_Identity=25.4385964912281, Blast_Score=69, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 37085; Mature: 36954

Theoretical pI: Translated: 10.82; Mature: 10.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATIRRSGSGWQVLIRRKNYVGPRSRNFLSRDLAESWADAVEERTKKVLNDTPVTLGEAI
CCCEECCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
NDYINGPLLLHRSAENEKYPLRVTAESWLGDIPLSDLQIKHFAVWRDERLLKVKPNTVMR
HHHCCCCEEEEECCCCCCCCEEEEHHHHCCCCCCCCCEEEEEEEECCCCEEEECCHHHHH
ELRILRVLIDWARDERGAEIKDNPARQLRVRGTGDARAPFLTNEDEKRLLFELSQMSNQN
HHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCC
HLRLTKLALTTGFRRSELLSLTWRNIDLKKKLLYIYRKNCAAIDNSSGMRLVPFPEKAQK
CEEEEEEHHHCCCCHHHHHEEHCCCCCHHHHHHHHHHHCCCEEECCCCCEEEECCHHHHH
ILEELQGRDGKVIELSKGAARNGFDKARKKAGLETLRFHDLRHIAISRMWRSGMSALEIS
HHHHHCCCCCCEEEECCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCEEEEE
ACSGHRDIKMLMRYSHFQLSI
CCCCCHHHHHHHHHCCCEECC
>Mature Secondary Structure 
ATIRRSGSGWQVLIRRKNYVGPRSRNFLSRDLAESWADAVEERTKKVLNDTPVTLGEAI
CCEECCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
NDYINGPLLLHRSAENEKYPLRVTAESWLGDIPLSDLQIKHFAVWRDERLLKVKPNTVMR
HHHCCCCEEEEECCCCCCCCEEEEHHHHCCCCCCCCCEEEEEEEECCCCEEEECCHHHHH
ELRILRVLIDWARDERGAEIKDNPARQLRVRGTGDARAPFLTNEDEKRLLFELSQMSNQN
HHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCC
HLRLTKLALTTGFRRSELLSLTWRNIDLKKKLLYIYRKNCAAIDNSSGMRLVPFPEKAQK
CEEEEEEHHHCCCCHHHHHEEHCCCCCHHHHHHHHHHHCCCEEECCCCCEEEECCHHHHH
ILEELQGRDGKVIELSKGAARNGFDKARKKAGLETLRFHDLRHIAISRMWRSGMSALEIS
HHHHHCCCCCCEEEECCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCEEEEE
ACSGHRDIKMLMRYSHFQLSI
CCCCCHHHHHHHHHCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3065610; 3029698 [H]