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The map label for this gene is ihfB [H]

Identifier: 121610067

GI number: 121610067

Start: 3474454

End: 3474792

Strand: Direct

Name: ihfB [H]

Synonym: Veis_3125

Alternate gene names: 121610067

Gene position: 3474454-3474792 (Clockwise)

Preceding gene: 121610066

Following gene: 121610069

Centisome position: 62.41

GC content: 66.96

Gene sequence:

>339_bases
ATGCCCCAAGATTCCATGACCCGCTCGGACCTCGTCGAAGAACTGGCTGCGCGCTTGACGCATCTGACGCGCCATGATGC
CGAATCCGCCGTCAAGGCCATTCTCGACGCCGTGGGCCAGGCCCTGGTGCGGGGGCACCGCATCGAGATCCGGGGCTTTG
GCAGCTTCTCGGTCAGTCACCACCCGCCCCGCATGGGCCGCAACCCCCGCAGCGGCGAAGCGGTCGCGATTCCGCAAAAG
CGTGTGCCGCACTTCAAACCCGGCAAAGCCTTGCGCGAAGCGGTGGACAAGCGCACCAGCGAAATGCAGGCCGAGGCCCG
GGGCGAGACCGAGGCTTGA

Upstream 100 bases:

>100_bases
CCTTGCTGCGTGCCAAGCTGGACAACAACCAGGACAAGTAAGCCGCCAGGCGCGCATCCGGCGGGCGCCTCGTGCGCCCG
CGCTTCTTTCACAAAGAGCC

Downstream 100 bases:

>100_bases
AGCCCGGCGCCTCAGTCGAGTTGGCTCATCGCGTCGTCGATCGCATCCACCATTTCATATCTGACACTTTTCATAAAGGT
AAGCGCATCGCGCACCGTAT

Product: histone family protein DNA-binding protein

Products: NA

Alternate protein names: IHF-beta [H]

Number of amino acids: Translated: 112; Mature: 111

Protein sequence:

>112_residues
MPQDSMTRSDLVEELAARLTHLTRHDAESAVKAILDAVGQALVRGHRIEIRGFGSFSVSHHPPRMGRNPRSGEAVAIPQK
RVPHFKPGKALREAVDKRTSEMQAEARGETEA

Sequences:

>Translated_112_residues
MPQDSMTRSDLVEELAARLTHLTRHDAESAVKAILDAVGQALVRGHRIEIRGFGSFSVSHHPPRMGRNPRSGEAVAIPQK
RVPHFKPGKALREAVDKRTSEMQAEARGETEA
>Mature_111_residues
PQDSMTRSDLVEELAARLTHLTRHDAESAVKAILDAVGQALVRGHRIEIRGFGSFSVSHHPPRMGRNPRSGEAVAIPQKR
VPHFKPGKALREAVDKRTSEMQAEARGETEA

Specific function: This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control [H]

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial histone-like protein family [H]

Homologues:

Organism=Escherichia coli, GI1787141, Length=88, Percent_Identity=51.1363636363636, Blast_Score=98, Evalue=1e-22,
Organism=Escherichia coli, GI1790433, Length=90, Percent_Identity=35.5555555555556, Blast_Score=72, Evalue=9e-15,
Organism=Escherichia coli, GI1786644, Length=91, Percent_Identity=36.2637362637363, Blast_Score=71, Evalue=1e-14,
Organism=Escherichia coli, GI1788005, Length=92, Percent_Identity=32.6086956521739, Blast_Score=65, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000119
- InterPro:   IPR010992
- InterPro:   IPR005685 [H]

Pfam domain/function: PF00216 Bac_DNA_binding [H]

EC number: NA

Molecular weight: Translated: 12343; Mature: 12212

Theoretical pI: Translated: 10.57; Mature: 10.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPQDSMTRSDLVEELAARLTHLTRHDAESAVKAILDAVGQALVRGHRIEIRGFGSFSVSH
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCC
HPPRMGRNPRSGEAVAIPQKRVPHFKPGKALREAVDKRTSEMQAEARGETEA
CCCCCCCCCCCCCEEECCHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
PQDSMTRSDLVEELAARLTHLTRHDAESAVKAILDAVGQALVRGHRIEIRGFGSFSVSH
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCC
HPPRMGRNPRSGEAVAIPQKRVPHFKPGKALREAVDKRTSEMQAEARGETEA
CCCCCCCCCCCCCEEECCHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11823852 [H]