Click here to switch to the map view.

The map label for this gene is phnL [H]

Identifier: 121609908

GI number: 121609908

Start: 3313230

End: 3313955

Strand: Direct

Name: phnL [H]

Synonym: Veis_2962

Alternate gene names: 121609908

Gene position: 3313230-3313955 (Clockwise)

Preceding gene: 121609907

Following gene: 121609909

Centisome position: 59.52

GC content: 67.22

Gene sequence:

>726_bases
ATGAACGCCCCCATCGTCCAACTGCAAGGGGTGGCCAAGCGCTTTACCCTGCACCACCAAAACGGCATCGAGCTACCGGT
GCTGGCCCGGGTGAACCTGTGCGTACACCCCGGCGAATGCCTGGTGCTCGACGGCCCTTCGGGCATGGGCAAAAGCAGCT
TGCTCAAAATGATCTACGCCAACTACCTGGCCAACGAGGGCAGCATCACGGTGCGCTCGGCGCAGGGCGCGCTGGTCGAT
GTGACCCAGGCCACGCCCCGGGCGCTGGTGCAATTGCGCCGCGACACCATCGGCTACGTCAGCCAGTTCCTGCGCGTGAT
ACCCAGGGTGTCGGCGCTGGACGTGGTGGCCGAGCCGTTGATCGAAGACGCAGCCGGCGATGCCCGGGCGCAGCAGGCAG
CGTATGCGCTGGCCCGCAGTTGGCTGAGCCGATTGCGCATTCCCGAGCGCCTGTGGCCGCTGCCGCCGGCCACCTTCTCG
GGCGGGGAGCAGCAACGCATCAACATCGCGCGCAACATGATCAAGCCCAAACCGTTGCTGCTGCTCGACGAACCCACGGC
ATCGCTGGACGCGGCCAACACCGCGACGGTGCTGGACCTGATCCGCGAAGCGCTGGCGCGCGGCGCCGCGCTGGTCGGCA
TCTTTCACGACACCCAGGTGGGCGCAGCCGTGGCCACGCGGCGTGTGAATGTGGCCGACTTCCGGAGTGTCACGCCATGG
GCATGA

Upstream 100 bases:

>100_bases
TGCAGCGCGGCCGCGTGGTCGAATCGGGCCTGACCGACCAGTTGCTCGACGACCCGCAGCACCCCTACACCCAACTCCTG
GTCTCTTCGGTACTGCAACC

Downstream 100 bases:

>100_bases
GCGCAAGCATTTTCAAGAACGCCCGCCTGGTGCTGCCCGGCGAGGTGGTGCAGGGCAGCCTGCGGGTCGATGGCGGCTGC
ATCGCGGCGCTCGACGCCGG

Product: phosphonate C-P lyase system protein PhnL

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 241; Mature: 241

Protein sequence:

>241_residues
MNAPIVQLQGVAKRFTLHHQNGIELPVLARVNLCVHPGECLVLDGPSGMGKSSLLKMIYANYLANEGSITVRSAQGALVD
VTQATPRALVQLRRDTIGYVSQFLRVIPRVSALDVVAEPLIEDAAGDARAQQAAYALARSWLSRLRIPERLWPLPPATFS
GGEQQRINIARNMIKPKPLLLLDEPTASLDAANTATVLDLIREALARGAALVGIFHDTQVGAAVATRRVNVADFRSVTPW
A

Sequences:

>Translated_241_residues
MNAPIVQLQGVAKRFTLHHQNGIELPVLARVNLCVHPGECLVLDGPSGMGKSSLLKMIYANYLANEGSITVRSAQGALVD
VTQATPRALVQLRRDTIGYVSQFLRVIPRVSALDVVAEPLIEDAAGDARAQQAAYALARSWLSRLRIPERLWPLPPATFS
GGEQQRINIARNMIKPKPLLLLDEPTASLDAANTATVLDLIREALARGAALVGIFHDTQVGAAVATRRVNVADFRSVTPW
A
>Mature_241_residues
MNAPIVQLQGVAKRFTLHHQNGIELPVLARVNLCVHPGECLVLDGPSGMGKSSLLKMIYANYLANEGSITVRSAQGALVD
VTQATPRALVQLRRDTIGYVSQFLRVIPRVSALDVVAEPLIEDAAGDARAQQAAYALARSWLSRLRIPERLWPLPPATFS
GGEQQRINIARNMIKPKPLLLLDEPTASLDAANTATVLDLIREALARGAALVGIFHDTQVGAAVATRRVNVADFRSVTPW
A

Specific function: Part of the binding-protein-dependent transport system for alkylphosphonates. Probably responsible for energy coupling to the transport system [H]

COG id: COG4778

COG function: function code P; ABC-type phosphonate transport system, ATPase component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Escherichia coli, GI1790534, Length=223, Percent_Identity=55.6053811659193, Blast_Score=243, Evalue=7e-66,
Organism=Escherichia coli, GI87081834, Length=237, Percent_Identity=29.535864978903, Blast_Score=95, Evalue=5e-21,
Organism=Escherichia coli, GI1787105, Length=230, Percent_Identity=30.4347826086957, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI48994997, Length=206, Percent_Identity=35.9223300970874, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1788225, Length=243, Percent_Identity=30.4526748971193, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI1787029, Length=233, Percent_Identity=30.9012875536481, Blast_Score=88, Evalue=5e-19,
Organism=Escherichia coli, GI1787089, Length=235, Percent_Identity=33.1914893617021, Blast_Score=87, Evalue=8e-19,
Organism=Escherichia coli, GI1789672, Length=206, Percent_Identity=31.5533980582524, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1786703, Length=203, Percent_Identity=34.9753694581281, Blast_Score=85, Evalue=3e-18,
Organism=Escherichia coli, GI1789873, Length=207, Percent_Identity=32.8502415458937, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI1786698, Length=217, Percent_Identity=29.0322580645161, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1790544, Length=216, Percent_Identity=30.0925925925926, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1786253, Length=219, Percent_Identity=30.5936073059361, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI48995001, Length=215, Percent_Identity=28.3720930232558, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1786872, Length=184, Percent_Identity=30.4347826086957, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1788644, Length=221, Percent_Identity=30.316742081448, Blast_Score=67, Evalue=7e-13,
Organism=Escherichia coli, GI1786398, Length=217, Percent_Identity=28.110599078341, Blast_Score=67, Evalue=8e-13,
Organism=Escherichia coli, GI145693107, Length=236, Percent_Identity=29.6610169491525, Blast_Score=67, Evalue=8e-13,
Organism=Escherichia coli, GI1790525, Length=224, Percent_Identity=26.7857142857143, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1789962, Length=198, Percent_Identity=28.2828282828283, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1787500, Length=201, Percent_Identity=27.8606965174129, Blast_Score=64, Evalue=8e-12,
Organism=Escherichia coli, GI1786975, Length=214, Percent_Identity=26.1682242990654, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI1788506, Length=224, Percent_Identity=29.0178571428571, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI87081791, Length=225, Percent_Identity=26.6666666666667, Blast_Score=61, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593
- InterPro:   IPR012701 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 26037; Mature: 26037

Theoretical pI: Translated: 9.89; Mature: 9.89

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNAPIVQLQGVAKRFTLHHQNGIELPVLARVNLCVHPGECLVLDGPSGMGKSSLLKMIYA
CCCCHHHHHHHHHHHHEECCCCCCCCCEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHH
NYLANEGSITVRSAQGALVDVTQATPRALVQLRRDTIGYVSQFLRVIPRVSALDVVAEPL
HHHCCCCCEEEEECCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
IEDAAGDARAQQAAYALARSWLSRLRIPERLWPLPPATFSGGEQQRINIARNMIKPKPLL
HHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCEE
LLDEPTASLDAANTATVLDLIREALARGAALVGIFHDTQVGAAVATRRVNVADFRSVTPW
EECCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCHHHCCCCCCC
A
C
>Mature Secondary Structure
MNAPIVQLQGVAKRFTLHHQNGIELPVLARVNLCVHPGECLVLDGPSGMGKSSLLKMIYA
CCCCHHHHHHHHHHHHEECCCCCCCCCEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHH
NYLANEGSITVRSAQGALVDVTQATPRALVQLRRDTIGYVSQFLRVIPRVSALDVVAEPL
HHHCCCCCEEEEECCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
IEDAAGDARAQQAAYALARSWLSRLRIPERLWPLPPATFSGGEQQRINIARNMIKPKPLL
HHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCEE
LLDEPTASLDAANTATVLDLIREALARGAALVGIFHDTQVGAAVATRRVNVADFRSVTPW
EECCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCHHHCCCCCCC
A
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2155230; 1840580; 7610040; 9278503 [H]