Click here to switch to the map view.

The map label for this gene is ydcJ [C]

Identifier: 121639215

GI number: 121639215

Start: 3660899

End: 3662146

Strand: Direct

Name: ydcJ [C]

Synonym: BCG_3357

Alternate gene names: 121639215

Gene position: 3660899-3662146 (Clockwise)

Preceding gene: 121639210

Following gene: 121639216

Centisome position: 83.69

GC content: 66.51

Gene sequence:

>1248_bases
ATGAGCCGCTCGAAAAGACTGCAGACTGGCCAGCTGCGCGCGCGCTTCGCCGCCGGGTTGTCAGCCATGTACGCCGCTGA
GGTGCCCGCCTACGGCACGCTGGTCGAGGTATGCGCACAAGTCAACTCCGATTACCTGACCCGGCATCGGCGAGCCGAGC
GGCTGGGGTCGCTTCAGCGCGTCACCGCCGAGCGCCACGGCGCCATCCGAGTGGGCAACCCGGCCGAACTCGCTGCGGTC
GCCGACCTGTTCGCCGCGTTCGGGATGCTGCCGGTCGGCTACTACGATCTGCGCACCGCTGAGTCACCAATTCCAGTGGT
GTCCACCGCATTTCGCCCAATCGATGCGAACGAGCTGGCACACAACCCGTTTCGGGTGTTCACCTCGATGCTGGCCATCG
AGGATCGGCGGTACTTCGATGCCGACCTACGCACCCGAGTGCAGACCTTCCTCGCGCGCCGGCAACTCTTTGACCCCGCG
TTGCTCGCCCAGGCGCGGGCAATCGCGGCTGACGGCGGCTGCGATGCCGACGACGCACCGGCTTTCGTCGCCGCGGCGGT
GGCCGCGTTTGCGCTGTCGCGGGAACCGGTCGAGAAATCCTGGTACGACGAGTTGTCCAGGGTGTCGGCGGTGGCCGCTG
ATATCGCTGGAGTCGGCTCCACACACATCAACCATCTGACGCCTCGGGTGCTCGACATAGACGATCTGTACCGTCGGATG
ACCGAGCGCGGCATCACCATGATCGACACCATCCAAGGCCCTCCCCGCACCGACGGACCCGATGTGTTGTTGCGGCAAAC
CTCATTTCGCGCGCTGGCCGAACCACGCATGTTTCGCGACGAGGACGGTACCGTGACGCCGGGAATCCTGCGGGTGCGGT
TCGGTGAGGTCGAGGCGCGCGGTGTCGCGCTGACCCCGCGAGGGCGCGAACGCTACGAAGCCGCGATGGCGGCCGCAGAT
CCGGCCGCGGTCTGGGCCACTCACTTTCCCTCGACGGATGCGGAGATGGCCGCTCAAGGCTTGGCCTACTACCGAGGTGG
TGACCCGTCAGCGCCGATCGTCTACGAAGACTTCCTGCCCGCTTCGGCCGCGGGCATCTTCCGCTCCAACCTGGATCGCG
ACTCGCAAACCGGTGACGGACCCGACGATGCCGGCTACAACGTCGATTGGTTGGCCGGGGCAATCGGCCGACACATTCAC
GACCCGTATGCGCTCTATGACGCGCTCGCCCAGGAGGAGCGGCGCTGA

Upstream 100 bases:

>100_bases
GCGTCACACGTCCGTCGGCGGCCAGTTCGCGCACCAGGATCCGATCGATATCGTCGAGCGCCTCGTTCATGGCCGGAGAC
TATCGCAACGGCAGTGCCGC

Downstream 100 bases:

>100_bases
TAACCACTGACGCGTTACGAGCCCAGGTGCTCGAAGCCTGCCAAGCGATCGGCGTAACCGCCGCCCTTGGCGAGCCGGGC
GAACACAGCCTGCCCGCGAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 415; Mature: 414

Protein sequence:

>415_residues
MSRSKRLQTGQLRARFAAGLSAMYAAEVPAYGTLVEVCAQVNSDYLTRHRRAERLGSLQRVTAERHGAIRVGNPAELAAV
ADLFAAFGMLPVGYYDLRTAESPIPVVSTAFRPIDANELAHNPFRVFTSMLAIEDRRYFDADLRTRVQTFLARRQLFDPA
LLAQARAIAADGGCDADDAPAFVAAAVAAFALSREPVEKSWYDELSRVSAVAADIAGVGSTHINHLTPRVLDIDDLYRRM
TERGITMIDTIQGPPRTDGPDVLLRQTSFRALAEPRMFRDEDGTVTPGILRVRFGEVEARGVALTPRGRERYEAAMAAAD
PAAVWATHFPSTDAEMAAQGLAYYRGGDPSAPIVYEDFLPASAAGIFRSNLDRDSQTGDGPDDAGYNVDWLAGAIGRHIH
DPYALYDALAQEERR

Sequences:

>Translated_415_residues
MSRSKRLQTGQLRARFAAGLSAMYAAEVPAYGTLVEVCAQVNSDYLTRHRRAERLGSLQRVTAERHGAIRVGNPAELAAV
ADLFAAFGMLPVGYYDLRTAESPIPVVSTAFRPIDANELAHNPFRVFTSMLAIEDRRYFDADLRTRVQTFLARRQLFDPA
LLAQARAIAADGGCDADDAPAFVAAAVAAFALSREPVEKSWYDELSRVSAVAADIAGVGSTHINHLTPRVLDIDDLYRRM
TERGITMIDTIQGPPRTDGPDVLLRQTSFRALAEPRMFRDEDGTVTPGILRVRFGEVEARGVALTPRGRERYEAAMAAAD
PAAVWATHFPSTDAEMAAQGLAYYRGGDPSAPIVYEDFLPASAAGIFRSNLDRDSQTGDGPDDAGYNVDWLAGAIGRHIH
DPYALYDALAQEERR
>Mature_414_residues
SRSKRLQTGQLRARFAAGLSAMYAAEVPAYGTLVEVCAQVNSDYLTRHRRAERLGSLQRVTAERHGAIRVGNPAELAAVA
DLFAAFGMLPVGYYDLRTAESPIPVVSTAFRPIDANELAHNPFRVFTSMLAIEDRRYFDADLRTRVQTFLARRQLFDPAL
LAQARAIAADGGCDADDAPAFVAAAVAAFALSREPVEKSWYDELSRVSAVAADIAGVGSTHINHLTPRVLDIDDLYRRMT
ERGITMIDTIQGPPRTDGPDVLLRQTSFRALAEPRMFRDEDGTVTPGILRVRFGEVEARGVALTPRGRERYEAAMAAADP
AAVWATHFPSTDAEMAAQGLAYYRGGDPSAPIVYEDFLPASAAGIFRSNLDRDSQTGDGPDDAGYNVDWLAGAIGRHIHD
PYALYDALAQEERR

Specific function: Unknown

COG id: COG5383

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ydcJ

Homologues:

Organism=Escherichia coli, GI1787692, Length=450, Percent_Identity=38.8888888888889, Blast_Score=262, Evalue=3e-71,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y3292_MYCTU (P65065)

Other databases:

- EMBL:   BX842582
- EMBL:   AE000516
- PIR:   E70981
- RefSeq:   NP_217809.1
- RefSeq:   NP_337920.1
- ProteinModelPortal:   P65065
- SMR:   P65065
- EnsemblBacteria:   EBMYCT00000000790
- EnsemblBacteria:   EBMYCT00000070098
- GeneID:   888734
- GeneID:   926667
- GenomeReviews:   AE000516_GR
- GenomeReviews:   AL123456_GR
- KEGG:   mtc:MT3391
- KEGG:   mtu:Rv3292
- TIGR:   MT3391
- TubercuList:   Rv3292
- GeneTree:   EBGT00050000015592
- HOGENOM:   HBG474907
- OMA:   MYRAEVP
- ProtClustDB:   CLSK792410
- InterPro:   IPR009770

Pfam domain/function: PF07063 DUF1338

EC number: NA

Molecular weight: Translated: 45332; Mature: 45201

Theoretical pI: Translated: 5.32; Mature: 5.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRSKRLQTGQLRARFAAGLSAMYAAEVPAYGTLVEVCAQVNSDYLTRHRRAERLGSLQR
CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
VTAERHGAIRVGNPAELAAVADLFAAFGMLPVGYYDLRTAESPIPVVSTAFRPIDANELA
HHHHHCCCEEECCHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHCCCCCCHHHHC
HNPFRVFTSMLAIEDRRYFDADLRTRVQTFLARRQLFDPALLAQARAIAADGGCDADDAP
CCHHHHHHHHHHHHHCHHHCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCH
AFVAAAVAAFALSREPVEKSWYDELSRVSAVAADIAGVGSTHINHLTPRVLDIDDLYRRM
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCEECHHHHHHHH
TERGITMIDTIQGPPRTDGPDVLLRQTSFRALAEPRMFRDEDGTVTPGILRVRFGEVEAR
HHCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCEECCCCCCCCCEEEEEECCCCCC
GVALTPRGRERYEAAMAAADPAAVWATHFPSTDAEMAAQGLAYYRGGDPSAPIVYEDFLP
CEEECCCCHHHHHHHHHHCCCHHHHEECCCCCCHHHHHHHHHEECCCCCCCCEEECCCCC
ASAAGIFRSNLDRDSQTGDGPDDAGYNVDWLAGAIGRHIHDPYALYDALAQEERR
HHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCC
>Mature Secondary Structure 
SRSKRLQTGQLRARFAAGLSAMYAAEVPAYGTLVEVCAQVNSDYLTRHRRAERLGSLQR
CCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
VTAERHGAIRVGNPAELAAVADLFAAFGMLPVGYYDLRTAESPIPVVSTAFRPIDANELA
HHHHHCCCEEECCHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHCCCCCCHHHHC
HNPFRVFTSMLAIEDRRYFDADLRTRVQTFLARRQLFDPALLAQARAIAADGGCDADDAP
CCHHHHHHHHHHHHHCHHHCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCH
AFVAAAVAAFALSREPVEKSWYDELSRVSAVAADIAGVGSTHINHLTPRVLDIDDLYRRM
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCEECHHHHHHHH
TERGITMIDTIQGPPRTDGPDVLLRQTSFRALAEPRMFRDEDGTVTPGILRVRFGEVEAR
HHCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCEECCCCCCCCCEEEEEECCCCCC
GVALTPRGRERYEAAMAAADPAAVWATHFPSTDAEMAAQGLAYYRGGDPSAPIVYEDFLP
CEEECCCCHHHHHHHHHHCCCHHHHEECCCCCCHHHHHHHHHEECCCCCCCCEEECCCCC
ASAAGIFRSNLDRDSQTGDGPDDAGYNVDWLAGAIGRHIHDPYALYDALAQEERR
HHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036