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The map label for this gene is ycdC [C]

Identifier: 121639094

GI number: 121639094

Start: 3537485

End: 3538171

Strand: Direct

Name: ycdC [C]

Synonym: BCG_3234

Alternate gene names: 121639094

Gene position: 3537485-3538171 (Clockwise)

Preceding gene: 121639090

Following gene: 121639096

Centisome position: 80.87

GC content: 63.9

Gene sequence:

>687_bases
ATGAGCGATCTCGCCAAGACAGCGCAGCGACGTGCCCTCAGATCGTCCGGCAGCGCTCGGCCAGACGAAGACGTTCCGGC
CCCGAACCGGCGCGGCAACCGACTGCCTCGCGACGAGCGCCGCGGCCAATTGCTTGTCGTTGCCAGTGACGTCTTCGTCG
ATCGGGGTTACCACGCGGCCGGTATGGACGAGATCGCGGATCGGGCGGGAGTCAGTAAACCCGTTCTGTATCAACATTTT
TCGAGCAAGTTAGAACTTTACCTGGCTGTGCTTCATCGGCACGTGGAAAACCTGGTGTCCGGCGTGCATCAGGCGCTGAG
CACGACTACCGACAACCGGCAGCGGTTGCACGTGGCCGTCCAGGCGTTCTTCGACTTCATCGAGCACGACAGCCAGGGTT
ACCGGCTGATCTTCGAGAACGACTTCGTCACCGAGCCCGAGGTCGCCGCACAGGTGCGGGTGGCCACCGAATCGTGCATC
GACGCAGTGTTCGCGCTGATCAGCGCCGATTCCGGACTGGACCCGCACCGCGCCCGGATGATCGCGGTGGGCTTGGTCGG
AATGAGCGTCGACTGCGCCAGATACTGGCTGGACGCCGACAAGCCGATTTCCAAGTCCGACGCCGTCGAGGGCACCGTGC
AGTTCGCCTGGGGCGGGTTGTCCCACGTCCCGCTTACCCGCTCGTAG

Upstream 100 bases:

>100_bases
CCGCTACCGATGCCGCAGGTAGTAATGTCATTCCGACAGACGCGCGGCGGTGGGGGTTGGCACAGTGGCCCTCGAATTAG
TGTGATCAGATTGAGGACTG

Downstream 100 bases:

>100_bases
CAACCTTTCCGGCGGACCCAGCTGCGGCGTCCACCCCGACGCCGAAGCCCACCCGGCGGGCGTCTGCGACACCGATCTCG
ACATAGGCGATCCTGGCGGT

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; TetR-Family Transcriptional Regulator; Transcriptional Regulator; Regulatory Protein TetR; TetR-Type Transcriptional Regulator; TetR/AcrR Family Transcriptional Regulator; Transcriptional Regulatory Protein; TetR-Family Regulatory Protein; Tetr Family Transcriptional Regulator; Transcriptional Regulator TetR Family Protein; Transcriptional Regulator Tetr Family; Regulatory Protein; Transcriptional Regulator TetR-Family; TetR-Family Protein Regulatory Protein; Transcription Regulator; TetR-Family Transcriptional Regulator Protein

Number of amino acids: Translated: 228; Mature: 227

Protein sequence:

>228_residues
MSDLAKTAQRRALRSSGSARPDEDVPAPNRRGNRLPRDERRGQLLVVASDVFVDRGYHAAGMDEIADRAGVSKPVLYQHF
SSKLELYLAVLHRHVENLVSGVHQALSTTTDNRQRLHVAVQAFFDFIEHDSQGYRLIFENDFVTEPEVAAQVRVATESCI
DAVFALISADSGLDPHRARMIAVGLVGMSVDCARYWLDADKPISKSDAVEGTVQFAWGGLSHVPLTRS

Sequences:

>Translated_228_residues
MSDLAKTAQRRALRSSGSARPDEDVPAPNRRGNRLPRDERRGQLLVVASDVFVDRGYHAAGMDEIADRAGVSKPVLYQHF
SSKLELYLAVLHRHVENLVSGVHQALSTTTDNRQRLHVAVQAFFDFIEHDSQGYRLIFENDFVTEPEVAAQVRVATESCI
DAVFALISADSGLDPHRARMIAVGLVGMSVDCARYWLDADKPISKSDAVEGTVQFAWGGLSHVPLTRS
>Mature_227_residues
SDLAKTAQRRALRSSGSARPDEDVPAPNRRGNRLPRDERRGQLLVVASDVFVDRGYHAAGMDEIADRAGVSKPVLYQHFS
SKLELYLAVLHRHVENLVSGVHQALSTTTDNRQRLHVAVQAFFDFIEHDSQGYRLIFENDFVTEPEVAAQVRVATESCID
AVFALISADSGLDPHRARMIAVGLVGMSVDCARYWLDADKPISKSDAVEGTVQFAWGGLSHVPLTRS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25167; Mature: 25035

Theoretical pI: Translated: 6.60; Mature: 6.60

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDLAKTAQRRALRSSGSARPDEDVPAPNRRGNRLPRDERRGQLLVVASDVFVDRGYHAA
CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHCCEEEEEEHHHHHCCCCCCC
GMDEIADRAGVSKPVLYQHFSSKLELYLAVLHRHVENLVSGVHQALSTTTDNRQRLHVAV
CHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
QAFFDFIEHDSQGYRLIFENDFVTEPEVAAQVRVATESCIDAVFALISADSGLDPHRARM
HHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
IAVGLVGMSVDCARYWLDADKPISKSDAVEGTVQFAWGGLSHVPLTRS
HHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCCCC
>Mature Secondary Structure 
SDLAKTAQRRALRSSGSARPDEDVPAPNRRGNRLPRDERRGQLLVVASDVFVDRGYHAA
CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHCCEEEEEEHHHHHCCCCCCC
GMDEIADRAGVSKPVLYQHFSSKLELYLAVLHRHVENLVSGVHQALSTTTDNRQRLHVAV
CHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
QAFFDFIEHDSQGYRLIFENDFVTEPEVAAQVRVATESCIDAVFALISADSGLDPHRARM
HHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
IAVGLVGMSVDCARYWLDADKPISKSDAVEGTVQFAWGGLSHVPLTRS
HHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA