Click here to switch to the map view.

The map label for this gene is ybiH [C]

Identifier: 121637148

GI number: 121637148

Start: 1392443

End: 1393081

Strand: Reverse

Name: ybiH [C]

Synonym: BCG_1279c

Alternate gene names: 121637148

Gene position: 1393081-1392443 (Counterclockwise)

Preceding gene: 121637149

Following gene: 121637147

Centisome position: 31.85

GC content: 63.38

Gene sequence:

>639_bases
ATGCGTTCAGCCGATCTGACCGCGCACGCCAGGATCAGAGAGGCGGCCATCGAACAGTTCGGTCGGCACGGATTCGGTGT
CGGGCTGCGAGCCATCGCCGAAGCGGCGGGGGTGAGCGCGGCATTGGTCATCCACCATTTCGGTTCCAAGGAAGGTCTGC
GCAAGGCCTGCGACGACTTCGTCGCCGAAGAGATCCGCAGCAGCAAGGCTGCGGCACTGAAGTCCAACGACCCGACCACC
TGGCTCGCGCAGATGGCCGAGATCGAATCCTACGCACCGCTGATGGCATACCTGGTGCGCAGCATGCAATCCGGCGGCGA
GCTGGCGAAGATGCTGTGCCAGAAGATGATCGACAACGCCGAGGAGTACCTGGACGAAGGAGTACGCGCCGGTACGGTCA
AGCCCAGCCGCGACCCGCGCGCCCGTGCTCGGTTTCTGGCGATCACCGGAGGCGGAGGCTTCCTGCTTTATCTGCAAATG
CACGAAAACCCAACCGATCTCCGTGCAGCGTTACGCGACTACGCGCACGACATGGTGCTGCCTTCCCTGGAGGTCTACAC
CGAAGGCCTGCTGGCCGACCGCGCCATGTACGAGGCCTTCCTGGCCGAAGCTCAACAAGGAGAAGCACATGTCGGCTGA

Upstream 100 bases:

>100_bases
AGGGCGATTTTGCGTCTGCTCGGCAAAGTTCGCGGCCTTCACGGATTCCCAACGGCGCCCTCCCTTGACCGGGGATGAAC
GTACGTTTAATATCCTGAAC

Downstream 100 bases:

>100_bases
CAACCACCAGGTGCCCATCGAGATTCGCGGACTGACCAAGCACTTCGGGTCGGTGCGGGCGCTCGACGGGCTCGACCTCA
CGGTGCGCGAGGGCGAAGTG

Product: putative transcriptional regulatory protein

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator; Transcriptional Regulatory Protein; HTH-Type Transcriptional Regulator; Regulatory Protein TetR; Tetr Family Transcriptional Regulator

Number of amino acids: Translated: 212; Mature: 212

Protein sequence:

>212_residues
MRSADLTAHARIREAAIEQFGRHGFGVGLRAIAEAAGVSAALVIHHFGSKEGLRKACDDFVAEEIRSSKAAALKSNDPTT
WLAQMAEIESYAPLMAYLVRSMQSGGELAKMLCQKMIDNAEEYLDEGVRAGTVKPSRDPRARARFLAITGGGGFLLYLQM
HENPTDLRAALRDYAHDMVLPSLEVYTEGLLADRAMYEAFLAEAQQGEAHVG

Sequences:

>Translated_212_residues
MRSADLTAHARIREAAIEQFGRHGFGVGLRAIAEAAGVSAALVIHHFGSKEGLRKACDDFVAEEIRSSKAAALKSNDPTT
WLAQMAEIESYAPLMAYLVRSMQSGGELAKMLCQKMIDNAEEYLDEGVRAGTVKPSRDPRARARFLAITGGGGFLLYLQM
HENPTDLRAALRDYAHDMVLPSLEVYTEGLLADRAMYEAFLAEAQQGEAHVG
>Mature_212_residues
MRSADLTAHARIREAAIEQFGRHGFGVGLRAIAEAAGVSAALVIHHFGSKEGLRKACDDFVAEEIRSSKAAALKSNDPTT
WLAQMAEIESYAPLMAYLVRSMQSGGELAKMLCQKMIDNAEEYLDEGVRAGTVKPSRDPRARARFLAITGGGGFLLYLQM
HENPTDLRAALRDYAHDMVLPSLEVYTEGLLADRAMYEAFLAEAQQGEAHVG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23099; Mature: 23099

Theoretical pI: Translated: 5.89; Mature: 5.89

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSADLTAHARIREAAIEQFGRHGFGVGLRAIAEAAGVSAALVIHHFGSKEGLRKACDDF
CCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHH
VAEEIRSSKAAALKSNDPTTWLAQMAEIESYAPLMAYLVRSMQSGGELAKMLCQKMIDNA
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
EEYLDEGVRAGTVKPSRDPRARARFLAITGGGGFLLYLQMHENPTDLRAALRDYAHDMVL
HHHHHCCCCCCCCCCCCCHHHHEEEEEEECCCCEEEEEEECCCHHHHHHHHHHHHHHHHC
PSLEVYTEGLLADRAMYEAFLAEAQQGEAHVG
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MRSADLTAHARIREAAIEQFGRHGFGVGLRAIAEAAGVSAALVIHHFGSKEGLRKACDDF
CCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHH
VAEEIRSSKAAALKSNDPTTWLAQMAEIESYAPLMAYLVRSMQSGGELAKMLCQKMIDNA
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
EEYLDEGVRAGTVKPSRDPRARARFLAITGGGGFLLYLQMHENPTDLRAALRDYAHDMVL
HHHHHCCCCCCCCCCCCCHHHHEEEEEEECCCCEEEEEEECCCHHHHHHHHHHHHHHHHC
PSLEVYTEGLLADRAMYEAFLAEAQQGEAHVG
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA