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The map label for this gene is yncC [C]

Identifier: 121636077

GI number: 121636077

Start: 224022

End: 224837

Strand: Reverse

Name: yncC [C]

Synonym: BCG_0201c

Alternate gene names: 121636077

Gene position: 224837-224022 (Counterclockwise)

Preceding gene: 121636091

Following gene: 121636074

Centisome position: 5.14

GC content: 65.44

Gene sequence:

>816_bases
TTGATAAAGCATGATGTTGTCTGGGTCACACTATGGCCTGAGCGGCCCAACAACAAGCCCCCGCCAAGCCCCCGGCAAGT
CCCCGGCAATCCCGGCCCGACCCTGAAAGTCCTGGCAAGCCACGTGAACGCACCTCTATCGGCGAAGCCGCGGAGCCAGC
TTCCCCTGCGCCGGGCACAGTTGTCCGACGAGGTCGCGGGCCACCTGCGGGCCGCCATCATGTCGGGCGCCCTGCGCTCT
GGAACGTTCATCCGTCTGGACGAGACGGCAGCCGAGCTCGGAGTCAGCGTCACGCCGGTGCGGGAGGCGCTGCTGAAACT
GCGCGGTGAGGGGATGGTCGGGCTGGAGCCACATCGCGGCCACGTGGTGCTGCCGTTGACCCGCCAAGACATCGACGACA
TTTTCTGGCTGCAGGCCACCATTGCCCAAGAACTTGCCACATCGGCCACCGCTCACATCACCGACGTTGAGATCGACGAG
CTGGACCGCATCAACAATGCGCTGGCCGGTGCTATCGGGTCCGGTGATGCCAAAACCATCGCGTCGATCGAGTTCGCGTT
CCACCGCGTCTTCAACAAAGCGAGCCGCCGGATCAAGTTGGCCTGGTTCCTGCTTAATGCCGCGCGCTATATGCCGGCGC
AGGTGTTCGCGGCCGACCCGCGATGGGGCGCGGACGCGGTGAACAGTCATCGGCAGCTGATCGCCGCGCTGCGCCGCCGC
GACACAGCCGCCGTAATCGAGCACACCGTCTGGCAGTTCACCGATGGGGCACGCAGGCTGACGGAGGCCCTGGCTGAGAC
CGAAGTCTTCGGCTGA

Upstream 100 bases:

>100_bases
CTAGTGTTAGCGCCCGCGTCAGGTGACTGGCCAGTTGCGCGGTCAACTATCCCTTCCTTCCCTTCCTTTCACTTGCGCAT
CCCTTGCGCCAGGTTGATAT

Downstream 100 bases:

>100_bases
GCCCGCACATGCCTTAGCTGGCCGCCAGCTGCTCGGCGCGCTGCTTGAGATTTTCGGCGAGATGCTCCAGGACGTTGTTG
AGCAGCATCTTCACCATCGG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator GntR Family; Transcriptional Regulator; Transcriptional Regulator GntR Family Protein; Regulatory Protein GntR HTH; Transcriptional Regulator Gntr Family; GntR Domain-Containing Protein; GntR Family Regulatory Protein; Transcriptional Regulatory Protein; Transcriptional Regulator MdcY Family Protein; FCD Domain Protein; GntR-Family Transcriptional Regulator; Gntr Family Transcriptional Regulator; Transcription Regulator Protein; Transcriptional Regulator GntR-Family; GntR Domain Protein; Mn-Dependent Transcriptional Regulator; Transcription Regulator; Regulator PutR For Proline Utilization GntR Family; GntR Family Transcriptional Regulatory Protein; Transcriptional Regulatory Protein GntR Family; GntR Family Transcription Regulator

Number of amino acids: Translated: 271; Mature: 271

Protein sequence:

>271_residues
MIKHDVVWVTLWPERPNNKPPPSPRQVPGNPGPTLKVLASHVNAPLSAKPRSQLPLRRAQLSDEVAGHLRAAIMSGALRS
GTFIRLDETAAELGVSVTPVREALLKLRGEGMVGLEPHRGHVVLPLTRQDIDDIFWLQATIAQELATSATAHITDVEIDE
LDRINNALAGAIGSGDAKTIASIEFAFHRVFNKASRRIKLAWFLLNAARYMPAQVFAADPRWGADAVNSHRQLIAALRRR
DTAAVIEHTVWQFTDGARRLTEALAETEVFG

Sequences:

>Translated_271_residues
MIKHDVVWVTLWPERPNNKPPPSPRQVPGNPGPTLKVLASHVNAPLSAKPRSQLPLRRAQLSDEVAGHLRAAIMSGALRS
GTFIRLDETAAELGVSVTPVREALLKLRGEGMVGLEPHRGHVVLPLTRQDIDDIFWLQATIAQELATSATAHITDVEIDE
LDRINNALAGAIGSGDAKTIASIEFAFHRVFNKASRRIKLAWFLLNAARYMPAQVFAADPRWGADAVNSHRQLIAALRRR
DTAAVIEHTVWQFTDGARRLTEALAETEVFG
>Mature_271_residues
MIKHDVVWVTLWPERPNNKPPPSPRQVPGNPGPTLKVLASHVNAPLSAKPRSQLPLRRAQLSDEVAGHLRAAIMSGALRS
GTFIRLDETAAELGVSVTPVREALLKLRGEGMVGLEPHRGHVVLPLTRQDIDDIFWLQATIAQELATSATAHITDVEIDE
LDRINNALAGAIGSGDAKTIASIEFAFHRVFNKASRRIKLAWFLLNAARYMPAQVFAADPRWGADAVNSHRQLIAALRRR
DTAAVIEHTVWQFTDGARRLTEALAETEVFG

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29747; Mature: 29747

Theoretical pI: Translated: 10.13; Mature: 10.13

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKHDVVWVTLWPERPNNKPPPSPRQVPGNPGPTLKVLASHVNAPLSAKPRSQLPLRRAQ
CCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHH
LSDEVAGHLRAAIMSGALRSGTFIRLDETAAELGVSVTPVREALLKLRGEGMVGLEPHRG
HHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCC
HVVLPLTRQDIDDIFWLQATIAQELATSATAHITDVEIDELDRINNALAGAIGSGDAKTI
EEEEEECHHCHHHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHHCCCCCCCHHH
ASIEFAFHRVFNKASRRIKLAWFLLNAARYMPAQVFAADPRWGADAVNSHRQLIAALRRR
HHHHHHHHHHHHHHHCEEEHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHHHHHC
DTAAVIEHTVWQFTDGARRLTEALAETEVFG
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MIKHDVVWVTLWPERPNNKPPPSPRQVPGNPGPTLKVLASHVNAPLSAKPRSQLPLRRAQ
CCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHH
LSDEVAGHLRAAIMSGALRSGTFIRLDETAAELGVSVTPVREALLKLRGEGMVGLEPHRG
HHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCC
HVVLPLTRQDIDDIFWLQATIAQELATSATAHITDVEIDELDRINNALAGAIGSGDAKTI
EEEEEECHHCHHHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHHCCCCCCCHHH
ASIEFAFHRVFNKASRRIKLAWFLLNAARYMPAQVFAADPRWGADAVNSHRQLIAALRRR
HHHHHHHHHHHHHHHCEEEHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHHHHHC
DTAAVIEHTVWQFTDGARRLTEALAETEVFG
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA