Click here to switch to the map view.

The map label for this gene is fliN [H]

Identifier: 120613023

GI number: 120613023

Start: 4877794

End: 4878240

Strand: Reverse

Name: fliN [H]

Synonym: Aave_4387

Alternate gene names: 120613023

Gene position: 4878240-4877794 (Counterclockwise)

Preceding gene: 120613024

Following gene: 120613022

Centisome position: 91.13

GC content: 66.89

Gene sequence:

>447_bases
ATGTCAACTGAAGGCGACAGCAACGACAACGACGGCAAGAGCGCGGCGGACGATCCGTTCGCCGGCTGGGCCGAAGCGCT
GGAGGAGCAGAAGAGCTCCGACGAGTCGCAGCCCGTGGACCAGGGCGGCCCCCTCGCGGGCGAGCCCGTGCGCCCGTTCT
CCTCGAGCAACGAGGCGCCGGTCAACGACATCAACATGGTGCTGGACATCCCCGTCCAGTTGTCCGTGGAGCTGGGCCGT
ACCAAGGTGCCCATCAAGTACATCCTGCAGCTGGCGCAGGGATCCGTCGTCGAGCTCGACGCCCTGGCCGGCGAACCCAT
GGACGTGCTGGTCAACGGCTACCTGATCGCCCAGGGCGAGGTCGTGGTGGTCAACGACAAGTTCGGCATCCGGCTGACCG
ACGTGGTCACGCCTTCGGAGCGGCTGCGCCGCGTGAGCCGTGGATAA

Upstream 100 bases:

>100_bases
CCCATCTTCGAGTGCCAGTACGGCACGCACAATTCCAAGTACGCCATCCGCATCGAGGAGTGCCTGCGCAACCCCGATCT
GAACTGGCTGGGAGAAAAGA

Downstream 100 bases:

>100_bases
CGCCGCCTCGGGCGCCGGCATGGCGCAGACCCTGGTCGTCGTCGTCCTGTTCATCGCTGCGGTGGCGCTGCTGCCCTGGC
TCATCCGCCGCCTGCAGCAA

Product: flagellar motor switch protein FliN

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 148; Mature: 147

Protein sequence:

>148_residues
MSTEGDSNDNDGKSAADDPFAGWAEALEEQKSSDESQPVDQGGPLAGEPVRPFSSSNEAPVNDINMVLDIPVQLSVELGR
TKVPIKYILQLAQGSVVELDALAGEPMDVLVNGYLIAQGEVVVVNDKFGIRLTDVVTPSERLRRVSRG

Sequences:

>Translated_148_residues
MSTEGDSNDNDGKSAADDPFAGWAEALEEQKSSDESQPVDQGGPLAGEPVRPFSSSNEAPVNDINMVLDIPVQLSVELGR
TKVPIKYILQLAQGSVVELDALAGEPMDVLVNGYLIAQGEVVVVNDKFGIRLTDVVTPSERLRRVSRG
>Mature_147_residues
STEGDSNDNDGKSAADDPFAGWAEALEEQKSSDESQPVDQGGPLAGEPVRPFSSSNEAPVNDINMVLDIPVQLSVELGRT
KVPIKYILQLAQGSVVELDALAGEPMDVLVNGYLIAQGEVVVVNDKFGIRLTDVVTPSERLRRVSRG

Specific function: FliN is one of three proteins (FliG, FliN, FliM) that form a switch complex that is proposed to be located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor

COG id: COG1886

COG function: function code NU; Flagellar motor switch/type III secretory pathway protein

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side. Bacterial flagellum basal body [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FliN/MopA/SpaO family [H]

Homologues:

Organism=Escherichia coli, GI1788256, Length=147, Percent_Identity=52.3809523809524, Blast_Score=147, Evalue=4e-37,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012826
- InterPro:   IPR001172
- InterPro:   IPR001543 [H]

Pfam domain/function: PF01052 SpoA [H]

EC number: NA

Molecular weight: Translated: 15807; Mature: 15676

Theoretical pI: Translated: 3.98; Mature: 3.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTEGDSNDNDGKSAADDPFAGWAEALEEQKSSDESQPVDQGGPLAGEPVRPFSSSNEAP
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
VNDINMVLDIPVQLSVELGRTKVPIKYILQLAQGSVVELDALAGEPMDVLVNGYLIAQGE
CCCCEEEEECCEEEEEECCCCCCCHHHHHHHHCCCEEEEHHHCCCCCEEEEECEEEECCC
VVVVNDKFGIRLTDVVTPSERLRRVSRG
EEEEECCCCEEEEEEECCHHHHHHHHCC
>Mature Secondary Structure 
STEGDSNDNDGKSAADDPFAGWAEALEEQKSSDESQPVDQGGPLAGEPVRPFSSSNEAP
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
VNDINMVLDIPVQLSVELGRTKVPIKYILQLAQGSVVELDALAGEPMDVLVNGYLIAQGE
CCCCEEEEECCEEEEEECCCCCCCHHHHHHHHCCCEEEEHHHCCCCCEEEEECEEEECCC
VVVVNDKFGIRLTDVVTPSERLRRVSRG
EEEEECCCCEEEEEEECCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2651416; 9097040; 9278503 [H]