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The map label for this gene is xpsF [H]

Identifier: 120612796

GI number: 120612796

Start: 4611528

End: 4612811

Strand: Reverse

Name: xpsF [H]

Synonym: Aave_4159

Alternate gene names: 120612796

Gene position: 4612811-4611528 (Counterclockwise)

Preceding gene: 120612797

Following gene: 120612795

Centisome position: 86.18

GC content: 67.76

Gene sequence:

>1284_bases
ATGCCTGACTACGCGTGGCGCGCCGTCGCCGCATCCGGCAAGGTCGTCGAAGGCCGGCAGACCGCGCCGAGCGAGGCGCA
GGTGCTCAAGCAATTGCGCGAGCAGGGCCTCACGCCCCTGGGCATCAGCGATGCCGCGGGGGCGCCTCCGGTCGCCGCGG
CCTCCGAGCGCGGCGCGGGCAAAGGCGTCGCCGCAACCGCCGCTGCCGCCGGCGTGGTTCCCGCGCCCCGCGGGCGCGGC
AGCAAGGGCCCCGTCAAGCAGGCGGACGTGCTCGCCCTCACGTCGGAACTCTCCATCATGCTGCGCGCCGGCCTGGCGCT
CGACAACGCCCTGCGCGTGCTCATCGACATGAGCCACAAGCCCAGCATGGCCACGCTGCTCCAGGGTGTGCTGGACGCGG
TCAAGGGCGGCACGCCACTCAGCCGGGCACTCGCGCAGCACCGGGACCTGTTCGGCGACTTCTACATCAACATGATCCGC
TCGGGCGAGGCGAGCGGCCAGATGTCCGCCGTGCTCGAGCGACTCGTCGCCCACATGGAGCGCCAGCGCGCCCTGCGAGA
CAGCGTCATCTCGGCCACCATCTACCCGGCCATCCTGCTGGGTGTCGCGGTGCTGTCGCTGATCGCCATGCTGGGCTTCG
TCGTGCCGCAGTTCGAGAAACTTTTCACCGATATGGGCGACGCGCTTCCCTTGCCGACCCAGATGGTGATGGCCCTGGGC
CATGCCTTCACCCGCTACGGCCTCCTGATCGGCATCGCGGCGCTGGGGCTCGGGCTGCTCGTGCGCCGCTGGGTCACGTC
CCCGGCCGGCCGCATGTGGTGGCAGTCGCGCCTTCTGAAAATGCCCCTCATGGGGCCGCTGGCCCTCAAGTACCAACTGA
CACTGTTCTCCCGCTCCCTGGGCACGCTGCTCGGCAACGGAGTACCGATGCTCACGGCCCTGCACATCGCCACCGAGACG
GTGAACAACACCGTGCTCCAGCAGTCGCTCTCCAAGGTGGCTCCCATCGTGAAGGAGGGTGGCAAGGTGGTGCAGGCCAT
CACCGCCACCGGCATCTTCGAGCCCATCGCGATCAACCTGATCCGCGTGGGGGAAGAGACGGGGCGCATCGGCCAGATGA
TGCTCGAGCTGTCCAACATATTGAACCGCGAGGTCGAAACCGGTATCAAACGCCTTCTCACCCTGGTCGAGCCCGTGCTG
ATCCTGGTGCTGGGCGTGCTGATCGCCGCCATCATCGTCTCCATCCTTCTCGGTATCCTGTCCATCAATGACCTCGCCGT
ATAA

Upstream 100 bases:

>100_bases
CAGGGCGGCATGCTCAACCTCTACGAGGACGGCCTGCGCAAGGTGGCGGCCGGCATGACCACGCTGGACGAACTGAGCCG
CGTGACGCAGGACCAGGGCG

Downstream 100 bases:

>100_bases
TTTTCGTTTGTCCAAGGAGTCCTTTTCCATGGCGCACATCCTTGCCCGCCGCTCCTGTGGCACGCCCATGCAACGCAAAT
CCTCGCGCGGCTTCACCCTC

Product: type II secretion system protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 427; Mature: 426

Protein sequence:

>427_residues
MPDYAWRAVAASGKVVEGRQTAPSEAQVLKQLREQGLTPLGISDAAGAPPVAAASERGAGKGVAATAAAAGVVPAPRGRG
SKGPVKQADVLALTSELSIMLRAGLALDNALRVLIDMSHKPSMATLLQGVLDAVKGGTPLSRALAQHRDLFGDFYINMIR
SGEASGQMSAVLERLVAHMERQRALRDSVISATIYPAILLGVAVLSLIAMLGFVVPQFEKLFTDMGDALPLPTQMVMALG
HAFTRYGLLIGIAALGLGLLVRRWVTSPAGRMWWQSRLLKMPLMGPLALKYQLTLFSRSLGTLLGNGVPMLTALHIATET
VNNTVLQQSLSKVAPIVKEGGKVVQAITATGIFEPIAINLIRVGEETGRIGQMMLELSNILNREVETGIKRLLTLVEPVL
ILVLGVLIAAIIVSILLGILSINDLAV

Sequences:

>Translated_427_residues
MPDYAWRAVAASGKVVEGRQTAPSEAQVLKQLREQGLTPLGISDAAGAPPVAAASERGAGKGVAATAAAAGVVPAPRGRG
SKGPVKQADVLALTSELSIMLRAGLALDNALRVLIDMSHKPSMATLLQGVLDAVKGGTPLSRALAQHRDLFGDFYINMIR
SGEASGQMSAVLERLVAHMERQRALRDSVISATIYPAILLGVAVLSLIAMLGFVVPQFEKLFTDMGDALPLPTQMVMALG
HAFTRYGLLIGIAALGLGLLVRRWVTSPAGRMWWQSRLLKMPLMGPLALKYQLTLFSRSLGTLLGNGVPMLTALHIATET
VNNTVLQQSLSKVAPIVKEGGKVVQAITATGIFEPIAINLIRVGEETGRIGQMMLELSNILNREVETGIKRLLTLVEPVL
ILVLGVLIAAIIVSILLGILSINDLAV
>Mature_426_residues
PDYAWRAVAASGKVVEGRQTAPSEAQVLKQLREQGLTPLGISDAAGAPPVAAASERGAGKGVAATAAAAGVVPAPRGRGS
KGPVKQADVLALTSELSIMLRAGLALDNALRVLIDMSHKPSMATLLQGVLDAVKGGTPLSRALAQHRDLFGDFYINMIRS
GEASGQMSAVLERLVAHMERQRALRDSVISATIYPAILLGVAVLSLIAMLGFVVPQFEKLFTDMGDALPLPTQMVMALGH
AFTRYGLLIGIAALGLGLLVRRWVTSPAGRMWWQSRLLKMPLMGPLALKYQLTLFSRSLGTLLGNGVPMLTALHIATETV
NNTVLQQSLSKVAPIVKEGGKVVQAITATGIFEPIAINLIRVGEETGRIGQMMLELSNILNREVETGIKRLLTLVEPVLI
LVLGVLIAAIIVSILLGILSINDLAV

Specific function: Involved in a general secretion pathway (GSP) for the export of proteins [H]

COG id: COG1459

COG function: function code NU; Type II secretory pathway, component PulF

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP F family [H]

Homologues:

Organism=Escherichia coli, GI1789724, Length=427, Percent_Identity=28.1030444964871, Blast_Score=176, Evalue=2e-45,
Organism=Escherichia coli, GI1786295, Length=428, Percent_Identity=27.1028037383178, Blast_Score=132, Evalue=5e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003004
- InterPro:   IPR018076
- InterPro:   IPR001992 [H]

Pfam domain/function: PF00482 GSPII_F [H]

EC number: NA

Molecular weight: Translated: 45120; Mature: 44989

Theoretical pI: Translated: 10.45; Mature: 10.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDYAWRAVAASGKVVEGRQTAPSEAQVLKQLREQGLTPLGISDAAGAPPVAAASERGAG
CCCHHHHHHHCCCCEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
KGVAATAAAAGVVPAPRGRGSKGPVKQADVLALTSELSIMLRAGLALDNALRVLIDMSHK
CCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PSMATLLQGVLDAVKGGTPLSRALAQHRDLFGDFYINMIRSGEASGQMSAVLERLVAHME
CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
RQRALRDSVISATIYPAILLGVAVLSLIAMLGFVVPQFEKLFTDMGDALPLPTQMVMALG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
HAFTRYGLLIGIAALGLGLLVRRWVTSPAGRMWWQSRLLKMPLMGPLALKYQLTLFSRSL
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
GTLLGNGVPMLTALHIATETVNNTVLQQSLSKVAPIVKEGGKVVQAITATGIFEPIAINL
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHH
IRVGEETGRIGQMMLELSNILNREVETGIKRLLTLVEPVLILVLGVLIAAIIVSILLGIL
HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SINDLAV
HHHHHCC
>Mature Secondary Structure 
PDYAWRAVAASGKVVEGRQTAPSEAQVLKQLREQGLTPLGISDAAGAPPVAAASERGAG
CCHHHHHHHCCCCEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC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HHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1944223; 12024217 [H]