Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
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Accession | NC_008752 |
Length | 5,352,772 |
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The map label for this gene is degP [H]
Identifier: 120612604
GI number: 120612604
Start: 4394845
End: 4396389
Strand: Reverse
Name: degP [H]
Synonym: Aave_3965
Alternate gene names: 120612604
Gene position: 4396389-4394845 (Counterclockwise)
Preceding gene: 120612605
Following gene: 120612603
Centisome position: 82.13
GC content: 70.81
Gene sequence:
>1545_bases ATGAACACGATCCTCTCCACCCCCCGCCGCCTGACCCTCGCCCTGGTGGTCGCCGGGGCCATGGGGGCGACGGGCGCGGG GCTCGTCACCAACCTGCATTCCAGCCATGCCGCGGTGCCTCCCGCGGCCACGGGTCCGGTGGCTGCGGCGCCGGCCGCGT ATTCCGGCGTGTCCGCCCCGGATTTCGCGCAGATCACGGCGCTCAACGGCCCGGCGGTGGTGAACATCAGCGTGACGGGC ACGACCAAGACCTCATACAACGGCGGGGATGACGACGACGACGATGAGACGCCCTCTGCCCAGCACCAGCAGCCCCGCGG CGGGCAGGGCATGGATCCGGACGATCCGTTCTTCGAATTCTTCCGCCGCTTCGGCATGCCCGGCATGGGCGGCGGCCGCA TGCCGCAGCGCGAGGTGCCGATGCGCGGCGAGGGCTCGGGTTTCATCGTGAGCCCGGACGGCGTCATACTGACCAATGCC CATGTGGTCAAGGGCGCCAGCACGGTCACGGTGAAGCTCACCGACCGGCGCGAATTCCGCGCCAAGGTGCTGGGCTCCGA TCCCAAGACCGACATCGCCGTCCTGAAAATCGACGCGAAAGACCTGCCCGTGGTGCACCTGGGCGATACGAAAAAGCTCG CGGTGGGCGAATGGGTGCTGGCCATCGGCTCGCCCTTCGGTTTCGAGAACAGCGTGACGGCGGGCGTGGTGAGCGCCAAG GGCCGCGCGCTGCCGGACGACAGCTTCGTGCCCTTCATCCAGACGGACGTGGCGGTGAACCCCGGCAACTCCGGCGGCCC GCTGTTCAACTCGCGCGGCGAGGTGGTGGGCATCAACTCGCAGATCTACAGCCGCTCGGGCGGCTACCAGGGCGTGTCAT TCGCGATCCCGATCGAAGTGGCGGAGCGGGTGAAGGAGCAGATCCTGGCCACGGGCAAGGCCAGCCATGCGCGCCTGGGC GTGTCGGTGCAGGAGGTGAACCAGGCGTTCGCCGATTCCTTCCAGCTCGACAAGCCCGAGGGCGCGCTGGTGGCGGGCGT GGAGCCCGGCGGCCCGGCGGACAAGGCCGGCCTGAAGTCGGGCGACGTGATCCTGCGCATCAACGGCCAGCCCATCGTGG CGTCCGGCGACCTGCCGGCCTTCGTGGGCCAGTCGGCGCCCGGCTCCACCGCGCGCATGCAGGTGTGGCGCCACGGCAAG CAGGAAGAGATCACCGCCACCCTGGGCGATGCGAGCGACAAGCCGGCCAAGCTGGCCAGCGCCGACAAGGCGGTGGGCAA GGGCCAGCTGGGCCTGTCGCTGCGGCCGCTGCAGCCGCAGGAGCGCCGCGAGGCCGGCGTGAGCGGCGGGCTGGTGGTGG AAGAAGCGCGCGGCCCGGCCGCCCTGGCGGGCGTGGCCCCCGGCGATGTGCTGCTGTCCATCAACGGCACGCCGGCGCAG AGCATCGAGCAGGTGCGCGCCGCGATGGCCAAGGCGGGCAAGTCGGTGGCGCTGCTGATCCAGCGCGACGGCGACAAGAT CTTCGTGCCCGTGCCCCTGGGCTGA
Upstream 100 bases:
>100_bases CCGACACCGCCCTAAGCCTCCCCTAACCTTCCTCTAAGCCCGCTCTAAGCCTCGCTGCGCACACTCCCGTTCATGCCACA ACCCACCTGAAAGGTTTGCC
Downstream 100 bases:
>100_bases CCCCTCCCGGGCGGAGGCCGGTTGCCGCCGGCGGAGCCCAGGGGCTCGGCCCGCATTGGGCGGGCCCATGTCCCTGCGGC CCGGCCGGTTCCTACGCGGC
Product: protease Do
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 514; Mature: 514
Protein sequence:
>514_residues MNTILSTPRRLTLALVVAGAMGATGAGLVTNLHSSHAAVPPAATGPVAAAPAAYSGVSAPDFAQITALNGPAVVNISVTG TTKTSYNGGDDDDDDETPSAQHQQPRGGQGMDPDDPFFEFFRRFGMPGMGGGRMPQREVPMRGEGSGFIVSPDGVILTNA HVVKGASTVTVKLTDRREFRAKVLGSDPKTDIAVLKIDAKDLPVVHLGDTKKLAVGEWVLAIGSPFGFENSVTAGVVSAK GRALPDDSFVPFIQTDVAVNPGNSGGPLFNSRGEVVGINSQIYSRSGGYQGVSFAIPIEVAERVKEQILATGKASHARLG VSVQEVNQAFADSFQLDKPEGALVAGVEPGGPADKAGLKSGDVILRINGQPIVASGDLPAFVGQSAPGSTARMQVWRHGK QEEITATLGDASDKPAKLASADKAVGKGQLGLSLRPLQPQERREAGVSGGLVVEEARGPAALAGVAPGDVLLSINGTPAQ SIEQVRAAMAKAGKSVALLIQRDGDKIFVPVPLG
Sequences:
>Translated_514_residues MNTILSTPRRLTLALVVAGAMGATGAGLVTNLHSSHAAVPPAATGPVAAAPAAYSGVSAPDFAQITALNGPAVVNISVTG TTKTSYNGGDDDDDDETPSAQHQQPRGGQGMDPDDPFFEFFRRFGMPGMGGGRMPQREVPMRGEGSGFIVSPDGVILTNA HVVKGASTVTVKLTDRREFRAKVLGSDPKTDIAVLKIDAKDLPVVHLGDTKKLAVGEWVLAIGSPFGFENSVTAGVVSAK GRALPDDSFVPFIQTDVAVNPGNSGGPLFNSRGEVVGINSQIYSRSGGYQGVSFAIPIEVAERVKEQILATGKASHARLG VSVQEVNQAFADSFQLDKPEGALVAGVEPGGPADKAGLKSGDVILRINGQPIVASGDLPAFVGQSAPGSTARMQVWRHGK QEEITATLGDASDKPAKLASADKAVGKGQLGLSLRPLQPQERREAGVSGGLVVEEARGPAALAGVAPGDVLLSINGTPAQ SIEQVRAAMAKAGKSVALLIQRDGDKIFVPVPLG >Mature_514_residues MNTILSTPRRLTLALVVAGAMGATGAGLVTNLHSSHAAVPPAATGPVAAAPAAYSGVSAPDFAQITALNGPAVVNISVTG TTKTSYNGGDDDDDDETPSAQHQQPRGGQGMDPDDPFFEFFRRFGMPGMGGGRMPQREVPMRGEGSGFIVSPDGVILTNA HVVKGASTVTVKLTDRREFRAKVLGSDPKTDIAVLKIDAKDLPVVHLGDTKKLAVGEWVLAIGSPFGFENSVTAGVVSAK GRALPDDSFVPFIQTDVAVNPGNSGGPLFNSRGEVVGINSQIYSRSGGYQGVSFAIPIEVAERVKEQILATGKASHARLG VSVQEVNQAFADSFQLDKPEGALVAGVEPGGPADKAGLKSGDVILRINGQPIVASGDLPAFVGQSAPGSTARMQVWRHGK QEEITATLGDASDKPAKLASADKAVGKGQLGLSLRPLQPQERREAGVSGGLVVEEARGPAALAGVAPGDVLLSINGTPAQ SIEQVRAAMAKAGKSVALLIQRDGDKIFVPVPLG
Specific function: Serine Protease That Is Required At High Temperature. Involved In The Degradation Of Damaged Proteins. It Can Degrade Icia, Ada, Casein And Globin. Shared Specificity With Degq. [C]
COG id: COG0265
COG function: function code O; Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
Gene ontology:
Cell location: Periplasmic Protein [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 PDZ (DHR) domains [H]
Homologues:
Organism=Homo sapiens, GI4506141, Length=308, Percent_Identity=38.6363636363636, Blast_Score=169, Evalue=9e-42, Organism=Homo sapiens, GI24308541, Length=258, Percent_Identity=37.984496124031, Blast_Score=159, Evalue=7e-39, Organism=Homo sapiens, GI22129776, Length=364, Percent_Identity=32.6923076923077, Blast_Score=155, Evalue=7e-38, Organism=Homo sapiens, GI7019477, Length=259, Percent_Identity=38.996138996139, Blast_Score=144, Evalue=2e-34, Organism=Escherichia coli, GI1786356, Length=370, Percent_Identity=36.2162162162162, Blast_Score=223, Evalue=2e-59, Organism=Escherichia coli, GI1789629, Length=406, Percent_Identity=34.7290640394089, Blast_Score=217, Evalue=1e-57, Organism=Escherichia coli, GI1789630, Length=278, Percent_Identity=34.5323741007194, Blast_Score=166, Evalue=5e-42, Organism=Drosophila melanogaster, GI24646839, Length=286, Percent_Identity=34.965034965035, Blast_Score=150, Evalue=3e-36,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001478 - InterPro: IPR009003 - InterPro: IPR011782 - InterPro: IPR001254 - InterPro: IPR001940 [H]
Pfam domain/function: PF00595 PDZ; PF00089 Trypsin [H]
EC number: 3.4.21.-
Molecular weight: Translated: 52783; Mature: 52783
Theoretical pI: Translated: 6.42; Mature: 6.42
Prosite motif: PS50106 PDZ
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNTILSTPRRLTLALVVAGAMGATGAGLVTNLHSSHAAVPPAATGPVAAAPAAYSGVSAP CCCCCCCCHHEEEEEEEHHCCCCCCCHHEEECCCCCCCCCCCCCCCCCCCCCHHCCCCCC DFAQITALNGPAVVNISVTGTTKTSYNGGDDDDDDETPSAQHQQPRGGQGMDPDDPFFEF CCEEEEEECCCEEEEEEEEECEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH FRRFGMPGMGGGRMPQREVPMRGEGSGFIVSPDGVILTNAHVVKGASTVTVKLTDRREFR HHHHCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEECCEEECCCCEEEEEECCCHHHH AKVLGSDPKTDIAVLKIDAKDLPVVHLGDTKKLAVGEWVLAIGSPFGFENSVTAGVVSAK HHHCCCCCCCCEEEEEECCCCCCEEEECCCCEEECCEEEEEECCCCCCCCCCEEEEEECC GRALPDDSFVPFIQTDVAVNPGNSGGPLFNSRGEVVGINSQIYSRSGGYQGVSFAIPIEV CCCCCCCCCCCEEEECEEECCCCCCCCCCCCCCCEEEECHHHCCCCCCCCCEEEEECHHH AERVKEQILATGKASHARLGVSVQEVNQAFADSFQLDKPEGALVAGVEPGGPADKAGLKS HHHHHHHHHHCCCCCCCEECCCHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCCC GDVILRINGQPIVASGDLPAFVGQSAPGSTARMQVWRHGKQEEITATLGDASDKPAKLAS CCEEEEECCCEEEECCCCCHHCCCCCCCCHHHHHHHHCCCCCEEEEEECCCCCCCCHHHH ADKAVGKGQLGLSLRPLQPQERREAGVSGGLVVEEARGPAALAGVAPGDVLLSINGTPAQ HHHHCCCCCCCEEECCCCCHHHHHCCCCCCEEEECCCCCEEEECCCCCCEEEEECCCCHH SIEQVRAAMAKAGKSVALLIQRDGDKIFVPVPLG HHHHHHHHHHHCCCEEEEEEEECCCEEEEEECCC >Mature Secondary Structure MNTILSTPRRLTLALVVAGAMGATGAGLVTNLHSSHAAVPPAATGPVAAAPAAYSGVSAP CCCCCCCCHHEEEEEEEHHCCCCCCCHHEEECCCCCCCCCCCCCCCCCCCCCHHCCCCCC DFAQITALNGPAVVNISVTGTTKTSYNGGDDDDDDETPSAQHQQPRGGQGMDPDDPFFEF CCEEEEEECCCEEEEEEEEECEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH FRRFGMPGMGGGRMPQREVPMRGEGSGFIVSPDGVILTNAHVVKGASTVTVKLTDRREFR HHHHCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEECCEEECCCCEEEEEECCCHHHH AKVLGSDPKTDIAVLKIDAKDLPVVHLGDTKKLAVGEWVLAIGSPFGFENSVTAGVVSAK HHHCCCCCCCCEEEEEECCCCCCEEEECCCCEEECCEEEEEECCCCCCCCCCEEEEEECC GRALPDDSFVPFIQTDVAVNPGNSGGPLFNSRGEVVGINSQIYSRSGGYQGVSFAIPIEV CCCCCCCCCCCEEEECEEECCCCCCCCCCCCCCCEEEECHHHCCCCCCCCCEEEEECHHH AERVKEQILATGKASHARLGVSVQEVNQAFADSFQLDKPEGALVAGVEPGGPADKAGLKS HHHHHHHHHHCCCCCCCEECCCHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCCC GDVILRINGQPIVASGDLPAFVGQSAPGSTARMQVWRHGKQEEITATLGDASDKPAKLAS CCEEEEECCCEEEECCCCCHHCCCCCCCCHHHHHHHHCCCCCEEEEEECCCCCCCCHHHH ADKAVGKGQLGLSLRPLQPQERREAGVSGGLVVEEARGPAALAGVAPGDVLLSINGTPAQ HHHHCCCCCCCEEECCCCCHHHHHCCCCCCEEEECCCCCEEEECCCCCCEEEEECCCCHH SIEQVRAAMAKAGKSVALLIQRDGDKIFVPVPLG HHHHHHHHHHHCCCEEEEEEEECCCEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Hydrolase; Acting on peptide bonds (Peptidases) [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10684935 [H]