Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
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Accession | NC_008752 |
Length | 5,352,772 |
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The map label for this gene is ytfM [C]
Identifier: 120612594
GI number: 120612594
Start: 4380712
End: 4382601
Strand: Direct
Name: ytfM [C]
Synonym: Aave_3955
Alternate gene names: 120612594
Gene position: 4380712-4382601 (Clockwise)
Preceding gene: 120612593
Following gene: 120612595
Centisome position: 81.84
GC content: 72.75
Gene sequence:
>1890_bases ATGCCCAGCCTGACTACAGCGCCGGCCCGTTGGCCGGCGTTGCTGCTTCTGAGTCTCGTGGCGCTCCAGGGCTGCAGCAT GCTGCCCGGCGCCCGCGACAAGGCGGACAGCGACGACAACACCGCCACCATCGCCTCCGATAACGGGGAAGCCGCAAGCG GCGCAGATGCCTTCACGCTCGACGTGCGAGGCCCCGACGCCGTGCGCGAACTGCTCGAGCGGCACATGGAACTGCAGCGC TTCCGCAAGCTGCCCGACCTGCAGGCCAGCGAACTCTCGCGCCTGCTCGGCGCGGCCGACGCCAATGCCCGCGAGCTGCT GGGTACCATGGGCTACTTCAGTCCCACCCTCACCATCGCCCTGGAGGAAACACCCGGCGGCCCCGCGCCCCGGTCCATCA CCGTGAACGTGGAGCCCGGCCCGCGCACCCTGGTCGCCGCGACCGACATCGCCTTCACCGGCCCCGAGGCCGAATCGCCC GGCTTCGCGCGCCGCAAGGAGCGCATCCAGCGCTCCTGGTCGCTGCAGCCCGGCCAGCCCTTCACGCAGGACGCCTGGGA CGGCGCCAAGGCCGGCGGCCTGCGCCAGCTGCAGGTCCGCCGCTACCCCACGGCGCGCATCGACGCCAGCCGCGCCGAGA TCGACGCCGACCGCAGCGAGGCCAGACTCGGCGTCACCTACGCCCCGGGCCCGCCCTACCGCTTCGGCGCGCTGCGCGTG CAGGGTGCTCAGCGCTACGACCCCGACGGCGCGCGCCGCATCGCGCGCCTGCCCACGGGCTCGGACTACTCCGAGAAGGA ACTGCTGGACGCGCAGGCGCGCCTGGCCAGCAGCGGCTACTACGACGCGGTGTTCCTCGCCCTCGACACCGACGGCACCG ACCCGCAGGCCGCGCCCGTCACCGCGCAGGTGCGCGAGGCGCCGCTGCAGAAGGTGGTGTTCGGCGTCGGCATCTCCACC GACACCGGCGCGCGCCTGAGCGTGGACCATATCCACAACCGCCTGCCCGGCATCGGCTGGCGCGCGGTGAGCAAGGTCGC CATCGACCAGAAGACGCGCCTGCTCTCCACCGAATGGACGGCCCTGCCCGAGGAGAGCGGCTGGCGCTGGTTCGGCGGCG CGCAGGTGCAGCGCGAGGAAACCGGCAGCTACGACACCGACAGCGTGCGCCTGCGCGGCGGCCGCACCAAAAGCACCGGG CATATCGACCGCAGCTACTTCCTGCAGTACGACGACTCCAAGAGCCGCGGCCCGTCGGCGCCACCCTCCAGCAACGCCAT CAGCGCCAACTACGGCTGGACGGGCCGCTACTTCAACAACGACACCTCGCCCACGCGCGGCTACGGCCTCGCGGCCGAAC TGGGCGTGGGCACGACGCTGCGTCCCGAGCGCGAGCCGTTCGTGCGCACGCGCGTGCGCTGGCAATCCTTCGTGCCCCTG GGCCGCGTGGACATGGGCGAGGGCGTCATCCGTTCGAGCCGGCTCTCGCTGCGCGCTGAAGGCGGCGCGGTGATCGCCCG CCAGGGCGCGGACATCCCGGTCACCCAGCTGTTCCTCACGGGCGGCGACACCACCGTGCGCGGCTACGGCTACCGCAAGA TCGGCGCGCGCACCGAGAACGACACCCTCTACGGCGGCCGCTACCTCGCGGTGGGCAGCGTGGAATGGCAGCGCCCCATC ACCCTGCGCGGCAACCGCACCGACTTCGAGAGCGCCGTGTTCGTGGACGCCGGCGCCGTGGCCGACCGCTGGGGCGACTT CGATCCGCGCGTGGGCGTGGGTGCCGGCCTGCGCTGGCGCAGCCCCGTGGGCCCGCTGCAGGCCGACGTGGCCTACGGCG TGCAGGCCAAGGCCCTGCGGCTGCACCTGCGCCTGGGTTTCAGCTTCTGA
Upstream 100 bases:
>100_bases AAAGTATCGGCCTCATCCTACAGTTGCTGGGGGGGCGGATGTATCCTTTGTCCCTCAAAGGCCTCGAGGAGACCATGCGG CTGCTGTCAAAATAAACTTC
Downstream 100 bases:
>100_bases CCGGCTCCGGCCGCTTTTATCCGCGCGATCCGATGGCCACGCACCAGACCCCGAACCCCTATGCCGCCGCCGCGGCCCCG CCACCCCGCGCACCCCGGCG
Product: surface antigen (D15)
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 629; Mature: 628
Protein sequence:
>629_residues MPSLTTAPARWPALLLLSLVALQGCSMLPGARDKADSDDNTATIASDNGEAASGADAFTLDVRGPDAVRELLERHMELQR FRKLPDLQASELSRLLGAADANARELLGTMGYFSPTLTIALEETPGGPAPRSITVNVEPGPRTLVAATDIAFTGPEAESP GFARRKERIQRSWSLQPGQPFTQDAWDGAKAGGLRQLQVRRYPTARIDASRAEIDADRSEARLGVTYAPGPPYRFGALRV QGAQRYDPDGARRIARLPTGSDYSEKELLDAQARLASSGYYDAVFLALDTDGTDPQAAPVTAQVREAPLQKVVFGVGIST DTGARLSVDHIHNRLPGIGWRAVSKVAIDQKTRLLSTEWTALPEESGWRWFGGAQVQREETGSYDTDSVRLRGGRTKSTG HIDRSYFLQYDDSKSRGPSAPPSSNAISANYGWTGRYFNNDTSPTRGYGLAAELGVGTTLRPEREPFVRTRVRWQSFVPL GRVDMGEGVIRSSRLSLRAEGGAVIARQGADIPVTQLFLTGGDTTVRGYGYRKIGARTENDTLYGGRYLAVGSVEWQRPI TLRGNRTDFESAVFVDAGAVADRWGDFDPRVGVGAGLRWRSPVGPLQADVAYGVQAKALRLHLRLGFSF
Sequences:
>Translated_629_residues MPSLTTAPARWPALLLLSLVALQGCSMLPGARDKADSDDNTATIASDNGEAASGADAFTLDVRGPDAVRELLERHMELQR FRKLPDLQASELSRLLGAADANARELLGTMGYFSPTLTIALEETPGGPAPRSITVNVEPGPRTLVAATDIAFTGPEAESP GFARRKERIQRSWSLQPGQPFTQDAWDGAKAGGLRQLQVRRYPTARIDASRAEIDADRSEARLGVTYAPGPPYRFGALRV QGAQRYDPDGARRIARLPTGSDYSEKELLDAQARLASSGYYDAVFLALDTDGTDPQAAPVTAQVREAPLQKVVFGVGIST DTGARLSVDHIHNRLPGIGWRAVSKVAIDQKTRLLSTEWTALPEESGWRWFGGAQVQREETGSYDTDSVRLRGGRTKSTG HIDRSYFLQYDDSKSRGPSAPPSSNAISANYGWTGRYFNNDTSPTRGYGLAAELGVGTTLRPEREPFVRTRVRWQSFVPL GRVDMGEGVIRSSRLSLRAEGGAVIARQGADIPVTQLFLTGGDTTVRGYGYRKIGARTENDTLYGGRYLAVGSVEWQRPI TLRGNRTDFESAVFVDAGAVADRWGDFDPRVGVGAGLRWRSPVGPLQADVAYGVQAKALRLHLRLGFSF >Mature_628_residues PSLTTAPARWPALLLLSLVALQGCSMLPGARDKADSDDNTATIASDNGEAASGADAFTLDVRGPDAVRELLERHMELQRF RKLPDLQASELSRLLGAADANARELLGTMGYFSPTLTIALEETPGGPAPRSITVNVEPGPRTLVAATDIAFTGPEAESPG FARRKERIQRSWSLQPGQPFTQDAWDGAKAGGLRQLQVRRYPTARIDASRAEIDADRSEARLGVTYAPGPPYRFGALRVQ GAQRYDPDGARRIARLPTGSDYSEKELLDAQARLASSGYYDAVFLALDTDGTDPQAAPVTAQVREAPLQKVVFGVGISTD TGARLSVDHIHNRLPGIGWRAVSKVAIDQKTRLLSTEWTALPEESGWRWFGGAQVQREETGSYDTDSVRLRGGRTKSTGH IDRSYFLQYDDSKSRGPSAPPSSNAISANYGWTGRYFNNDTSPTRGYGLAAELGVGTTLRPEREPFVRTRVRWQSFVPLG RVDMGEGVIRSSRLSLRAEGGAVIARQGADIPVTQLFLTGGDTTVRGYGYRKIGARTENDTLYGGRYLAVGSVEWQRPIT LRGNRTDFESAVFVDAGAVADRWGDFDPRVGVGAGLRWRSPVGPLQADVAYGVQAKALRLHLRLGFSF
Specific function: Unknown
COG id: COG0729
COG function: function code M; Outer membrane protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: To E.coli ytfM [H]
Homologues:
Organism=Escherichia coli, GI1790666, Length=120, Percent_Identity=40, Blast_Score=72, Evalue=9e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000184 [H]
Pfam domain/function: PF01103 Bac_surface_Ag [H]
EC number: NA
Molecular weight: Translated: 68268; Mature: 68137
Theoretical pI: Translated: 9.34; Mature: 9.34
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 1.0 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 0.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPSLTTAPARWPALLLLSLVALQGCSMLPGARDKADSDDNTATIASDNGEAASGADAFTL CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCEEEE DVRGPDAVRELLERHMELQRFRKLPDLQASELSRLLGAADANARELLGTMGYFSPTLTIA ECCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHCCCCCEEEEE LEETPGGPAPRSITVNVEPGPRTLVAATDIAFTGPEAESPGFARRKERIQRSWSLQPGQP EECCCCCCCCCEEEEEECCCCCEEEEEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCC FTQDAWDGAKAGGLRQLQVRRYPTARIDASRAEIDADRSEARLGVTYAPGPPYRFGALRV CCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHCCCCCCCCEEEEEECCCCCCEEEEEEE QGAQRYDPDGARRIARLPTGSDYSEKELLDAQARLASSGYYDAVFLALDTDGTDPQAAPV CCCCCCCCCHHHHEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCC TAQVREAPLQKVVFGVGISTDTGARLSVDHIHNRLPGIGWRAVSKVAIDQKTRLLSTEWT HHHHHHCCHHHHHEECCCCCCCCCEEEHHHHHHCCCCCCHHHHHHHHHHHHHHEECCCCC ALPEESGWRWFGGAQVQREETGSYDTDSVRLRGGRTKSTGHIDRSYFLQYDDSKSRGPSA CCCCCCCCEEECCCEEEHHCCCCCCCCCEEEECCCCCCCCCCCCEEEEEECCCCCCCCCC PPSSNAISANYGWTGRYFNNDTSPTRGYGLAAELGVGTTLRPEREPFVRTRVRWQSFVPL CCCCCEEECCCCCCCCEECCCCCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHCCCC GRVDMGEGVIRSSRLSLRAEGGAVIARQGADIPVTQLFLTGGDTTVRGYGYRKIGARTEN CCCCCCCCHHCCCCEEEEECCCEEEEECCCCCCEEEEEEECCCEEEECCCEEECCCCCCC DTLYGGRYLAVGSVEWQRPITLRGNRTDFESAVFVDAGAVADRWGDFDPRVGVGAGLRWR CEEECCEEEEEECCCCCCCEEEECCCCCCCCEEEEECCHHHHHCCCCCCCCCCCCCCEEC SPVGPLQADVAYGVQAKALRLHLRLGFSF CCCCCCHHHHHCCCEEEEEEEEEEECCCC >Mature Secondary Structure PSLTTAPARWPALLLLSLVALQGCSMLPGARDKADSDDNTATIASDNGEAASGADAFTL CCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCEEEE DVRGPDAVRELLERHMELQRFRKLPDLQASELSRLLGAADANARELLGTMGYFSPTLTIA ECCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHCCCCCEEEEE LEETPGGPAPRSITVNVEPGPRTLVAATDIAFTGPEAESPGFARRKERIQRSWSLQPGQP EECCCCCCCCCEEEEEECCCCCEEEEEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCC FTQDAWDGAKAGGLRQLQVRRYPTARIDASRAEIDADRSEARLGVTYAPGPPYRFGALRV CCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHCCCCCCCCEEEEEECCCCCCEEEEEEE QGAQRYDPDGARRIARLPTGSDYSEKELLDAQARLASSGYYDAVFLALDTDGTDPQAAPV CCCCCCCCCHHHHEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCC TAQVREAPLQKVVFGVGISTDTGARLSVDHIHNRLPGIGWRAVSKVAIDQKTRLLSTEWT HHHHHHCCHHHHHEECCCCCCCCCEEEHHHHHHCCCCCCHHHHHHHHHHHHHHEECCCCC ALPEESGWRWFGGAQVQREETGSYDTDSVRLRGGRTKSTGHIDRSYFLQYDDSKSRGPSA CCCCCCCCEEECCCEEEHHCCCCCCCCCEEEECCCCCCCCCCCCEEEEEECCCCCCCCCC PPSSNAISANYGWTGRYFNNDTSPTRGYGLAAELGVGTTLRPEREPFVRTRVRWQSFVPL CCCCCEEECCCCCCCCEECCCCCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHCCCC GRVDMGEGVIRSSRLSLRAEGGAVIARQGADIPVTQLFLTGGDTTVRGYGYRKIGARTEN CCCCCCCCHHCCCCEEEEECCCEEEEECCCCCCEEEEEEECCCEEEECCCEEECCCCCCC DTLYGGRYLAVGSVEWQRPITLRGNRTDFESAVFVDAGAVADRWGDFDPRVGVGAGLRWR CEEECCEEEEEECCCCCCCEEEECCCCCCCCEEEEECCHHHHHCCCCCCCCCCCCCCEEC SPVGPLQADVAYGVQAKALRLHLRLGFSF CCCCCCHHHHHCCCEEEEEEEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7542800; 10675023 [H]