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The map label for this gene is yhjC [C]

Identifier: 120612550

GI number: 120612550

Start: 4334314

End: 4335249

Strand: Reverse

Name: yhjC [C]

Synonym: Aave_3911

Alternate gene names: 120612550

Gene position: 4335249-4334314 (Counterclockwise)

Preceding gene: 120612552

Following gene: 120612547

Centisome position: 80.99

GC content: 69.98

Gene sequence:

>936_bases
ATGGATAGATTGCTCACCATGTGCGTTTTCCAGTCCGTGGCGGACGAGGGGGGCTTCGCCGCTGCCGCCCGGGCGCTCGA
CCTGTCGCCCGCCACCGTCACCCGGCTGGTGGCCGACCTCGAGGACCACATCGGCACCCGGCTGTTGCAGCGGACCACCC
GCAAGGTGTCGCTCACGGAAGCGGGAGAGGCCTACCTGCTGCGGGTGCGCAGCATCCTGGCCGACGTGGACGAGGCCTTC
GCCGTCGCCCAGGCGCACACGTCCGAGATCGCGGGGGTGCTGCGCCTGCTCGCGCCTCCGGCACTGGCCGTGCACATCCT
TGCCCCGCTGGTTTCGGGTTTCCGCCAGGCCCATCCGCGGGTCACGCTGGAGATCCACGTCGATTCCTCGCTCGACCCGC
CCATCGGCGACTACGACATCACCCTGCTCGGAGCGGACGAGCGCTTCAACGCGAACATCATCGCCCGGCCCATCGTCTCG
CTCGACGGCATCGTCTGCGCCTCGCCCGAATACCTGCGCGCGCACGGCATTCCGCAGCTACCCGAAGACCTGAAGCACCA
CCAGTGCCTGCTGCGTCGCCGCTCCGAAACGCGACCCGGCGTGATGCGCCTGCTCGAAGGCGGCGACGAAAGCCGGGCGG
TGGAGGTCGCTGTGCAGCCCGTGTGCGTGTCCAACCACATCGACACGCTGCTGCGCGCCACGCTCGATGGGGCGGGCATC
AGTTCGCAGCCGCTCGACCTGACGGCGCCCTATCTGCGCAGCGGACGGCTCGTGCGCGTGCTGGAGCCCTGGACCACGGG
GCGTTTCACGCTGTATGCGGCGCTGCCCAGCCGCAAGTTCATGCCCGCGCGCACCCGGGCCTTCCTGGACTTCCTGGGAC
AGCGCACGCGGCGCTCCATCGAAGAGGCCATGCGGACACCCGCGGCCCAGGGGTAG

Upstream 100 bases:

>100_bases
ACTGTACGCAGGGTTAACCCCCGGAAAAACAGCATCTGCGGCAATGATTAATTCATGAAATTGAAATAATCTGAGTTCAT
GAACCCACTTCATTGCGATC

Downstream 100 bases:

>100_bases
GACCGTGCGAAGGAGGCGTCAGGCCGGCTCGGGCAGGGCGAAGCCGTTCTGCCGCCAGGCCTCGTACACCGTCACCGCGA
CGGCATTCGACAGGTTGAGG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 311; Mature: 311

Protein sequence:

>311_residues
MDRLLTMCVFQSVADEGGFAAAARALDLSPATVTRLVADLEDHIGTRLLQRTTRKVSLTEAGEAYLLRVRSILADVDEAF
AVAQAHTSEIAGVLRLLAPPALAVHILAPLVSGFRQAHPRVTLEIHVDSSLDPPIGDYDITLLGADERFNANIIARPIVS
LDGIVCASPEYLRAHGIPQLPEDLKHHQCLLRRRSETRPGVMRLLEGGDESRAVEVAVQPVCVSNHIDTLLRATLDGAGI
SSQPLDLTAPYLRSGRLVRVLEPWTTGRFTLYAALPSRKFMPARTRAFLDFLGQRTRRSIEEAMRTPAAQG

Sequences:

>Translated_311_residues
MDRLLTMCVFQSVADEGGFAAAARALDLSPATVTRLVADLEDHIGTRLLQRTTRKVSLTEAGEAYLLRVRSILADVDEAF
AVAQAHTSEIAGVLRLLAPPALAVHILAPLVSGFRQAHPRVTLEIHVDSSLDPPIGDYDITLLGADERFNANIIARPIVS
LDGIVCASPEYLRAHGIPQLPEDLKHHQCLLRRRSETRPGVMRLLEGGDESRAVEVAVQPVCVSNHIDTLLRATLDGAGI
SSQPLDLTAPYLRSGRLVRVLEPWTTGRFTLYAALPSRKFMPARTRAFLDFLGQRTRRSIEEAMRTPAAQG
>Mature_311_residues
MDRLLTMCVFQSVADEGGFAAAARALDLSPATVTRLVADLEDHIGTRLLQRTTRKVSLTEAGEAYLLRVRSILADVDEAF
AVAQAHTSEIAGVLRLLAPPALAVHILAPLVSGFRQAHPRVTLEIHVDSSLDPPIGDYDITLLGADERFNANIIARPIVS
LDGIVCASPEYLRAHGIPQLPEDLKHHQCLLRRRSETRPGVMRLLEGGDESRAVEVAVQPVCVSNHIDTLLRATLDGAGI
SSQPLDLTAPYLRSGRLVRVLEPWTTGRFTLYAALPSRKFMPARTRAFLDFLGQRTRRSIEEAMRTPAAQG

Specific function: Unknown

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=299, Percent_Identity=33.1103678929766, Blast_Score=130, Evalue=1e-31,
Organism=Escherichia coli, GI1787128, Length=294, Percent_Identity=31.6326530612245, Blast_Score=126, Evalue=2e-30,
Organism=Escherichia coli, GI1786401, Length=292, Percent_Identity=29.7945205479452, Blast_Score=114, Evalue=8e-27,
Organism=Escherichia coli, GI1789639, Length=297, Percent_Identity=28.956228956229, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI87081978, Length=289, Percent_Identity=32.1799307958478, Blast_Score=104, Evalue=8e-24,
Organism=Escherichia coli, GI1787589, Length=291, Percent_Identity=27.1477663230241, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1789440, Length=289, Percent_Identity=26.9896193771626, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1789173, Length=254, Percent_Identity=27.9527559055118, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1788706, Length=298, Percent_Identity=22.8187919463087, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1789506, Length=251, Percent_Identity=22.7091633466135, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1786448, Length=116, Percent_Identity=31.0344827586207, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1787879, Length=139, Percent_Identity=36.6906474820144, Blast_Score=61, Evalue=7e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33986; Mature: 33986

Theoretical pI: Translated: 7.29; Mature: 7.29

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRLLTMCVFQSVADEGGFAAAARALDLSPATVTRLVADLEDHIGTRLLQRTTRKVSLTE
CCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEECC
AGEAYLLRVRSILADVDEAFAVAQAHTSEIAGVLRLLAPPALAVHILAPLVSGFRQAHPR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCC
VTLEIHVDSSLDPPIGDYDITLLGADERFNANIIARPIVSLDGIVCASPEYLRAHGIPQL
EEEEEEECCCCCCCCCCEEEEEEECCCCCCCCEEECHHHHHCCEEECCCHHHHHCCCCCC
PEDLKHHQCLLRRRSETRPGVMRLLEGGDESRAVEVAVQPVCVSNHIDTLLRATLDGAGI
HHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCC
SSQPLDLTAPYLRSGRLVRVLEPWTTGRFTLYAALPSRKFMPARTRAFLDFLGQRTRRSI
CCCCCCCCCHHHHCCCEEEEECCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHH
EEAMRTPAAQG
HHHHHCCCCCC
>Mature Secondary Structure
MDRLLTMCVFQSVADEGGFAAAARALDLSPATVTRLVADLEDHIGTRLLQRTTRKVSLTE
CCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEECC
AGEAYLLRVRSILADVDEAFAVAQAHTSEIAGVLRLLAPPALAVHILAPLVSGFRQAHPR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCC
VTLEIHVDSSLDPPIGDYDITLLGADERFNANIIARPIVSLDGIVCASPEYLRAHGIPQL
EEEEEEECCCCCCCCCCEEEEEEECCCCCCCCEEECHHHHHCCEEECCCHHHHHCCCCCC
PEDLKHHQCLLRRRSETRPGVMRLLEGGDESRAVEVAVQPVCVSNHIDTLLRATLDGAGI
HHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCC
SSQPLDLTAPYLRSGRLVRVLEPWTTGRFTLYAALPSRKFMPARTRAFLDFLGQRTRRSI
CCCCCCCCCHHHHCCCEEEEECCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHH
EEAMRTPAAQG
HHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8635745; 7542800 [H]