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The map label for this gene is ydaL [H]

Identifier: 120612419

GI number: 120612419

Start: 4196012

End: 4196692

Strand: Direct

Name: ydaL [H]

Synonym: Aave_3777

Alternate gene names: 120612419

Gene position: 4196012-4196692 (Clockwise)

Preceding gene: 120612418

Following gene: 120612423

Centisome position: 78.39

GC content: 73.72

Gene sequence:

>681_bases
ATGACCGTGAAAGCCCGCTCCCTCCAGGATCTGCAACCGCTGCGCAAGGCGCTGGCCGAGGCCGCCGAGCGCGAGGCCCG
GCTGCTGCGCGAGCGGCAGGAGGCCGCGCGCCGCGCGCGGGCCGAGCGCATGCTCTTCCAGGACGCGGTCGGTCCGGTGC
AGGCCCTGCGCGGCACGCAGGAGCGCCGCTGGCATGTGCCCGAGCCCCCCGAGCCGCAGCCCGTGCAGCGCGAACTCGAC
GAGGAGCGCGTGCTCCATGAATCGATCAGCGACGAATTCGACGTGAGCACGCTGCTGGACGTGGACGACCAGCTCAGCTT
CCGGCGTCCCGGCATCGGCACCGACGTGACGCACCGGCTGCGCGCCGGACACTGGAGCATCCAGCGCCAGCTCGACCTGC
ACGGCCTGCGCACCGACGAGGCGCGCGAAGCCCTGGGGGAATTCATCCGGCTGGCCCACCGCACCGGCCTGCGCTGCGTG
CGGGTGGTGCACGGCAAGGGCCTGGGCTCGCCCGGCAGGACGCCCGTGCTCAAGGGCCGCGTGCAGCGCTGGCTGGTCCA
GAAAAAAGAGGTCCTGGCCTTCGTGCAGGCACGCCCCGCGGAAGGAGGCGCCGGCGCGCTGGTCGTGCTGCTGCAGCCGG
GACGCCAGCGCACCGCAACGGCCCGCTGGCCTGCCGGCTAG

Upstream 100 bases:

>100_bases
GACATCCGGGCCTAGGGGTGCAAGCCGGCCCGCGCCGCTTTTCCGGTTACTCGGCCCGCCGCCGCGGGCGAGCGGGCAGA
TCGGATACAACCGGCATTCC

Downstream 100 bases:

>100_bases
CGGGCCCCGGCCCCGGGCGGGATCAGGCCCCGCATTTCCAGCCGCACGCCCAGCCCCCGGAGGTCAGCGCTGTGATAGAG
CGCCAGCCGGCCGCCATAGG

Product: Smr protein/MutS2

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 226; Mature: 225

Protein sequence:

>226_residues
MTVKARSLQDLQPLRKALAEAAEREARLLRERQEAARRARAERMLFQDAVGPVQALRGTQERRWHVPEPPEPQPVQRELD
EERVLHESISDEFDVSTLLDVDDQLSFRRPGIGTDVTHRLRAGHWSIQRQLDLHGLRTDEAREALGEFIRLAHRTGLRCV
RVVHGKGLGSPGRTPVLKGRVQRWLVQKKEVLAFVQARPAEGGAGALVVLLQPGRQRTATARWPAG

Sequences:

>Translated_226_residues
MTVKARSLQDLQPLRKALAEAAEREARLLRERQEAARRARAERMLFQDAVGPVQALRGTQERRWHVPEPPEPQPVQRELD
EERVLHESISDEFDVSTLLDVDDQLSFRRPGIGTDVTHRLRAGHWSIQRQLDLHGLRTDEAREALGEFIRLAHRTGLRCV
RVVHGKGLGSPGRTPVLKGRVQRWLVQKKEVLAFVQARPAEGGAGALVVLLQPGRQRTATARWPAG
>Mature_225_residues
TVKARSLQDLQPLRKALAEAAEREARLLRERQEAARRARAERMLFQDAVGPVQALRGTQERRWHVPEPPEPQPVQRELDE
ERVLHESISDEFDVSTLLDVDDQLSFRRPGIGTDVTHRLRAGHWSIQRQLDLHGLRTDEAREALGEFIRLAHRTGLRCVR
VVHGKGLGSPGRTPVLKGRVQRWLVQKKEVLAFVQARPAEGGAGALVVLLQPGRQRTATARWPAG

Specific function: Unknown

COG id: COG2840

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Smr domain [H]

Homologues:

Organism=Escherichia coli, GI1787602, Length=184, Percent_Identity=31.5217391304348, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1788671, Length=139, Percent_Identity=34.5323741007194, Blast_Score=75, Evalue=4e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002625 [H]

Pfam domain/function: PF01713 Smr [H]

EC number: NA

Molecular weight: Translated: 25525; Mature: 25393

Theoretical pI: Translated: 11.37; Mature: 11.37

Prosite motif: PS50828 SMR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVKARSLQDLQPLRKALAEAAEREARLLRERQEAARRARAERMLFQDAVGPVQALRGTQ
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
ERRWHVPEPPEPQPVQRELDEERVLHESISDEFDVSTLLDVDDQLSFRRPGIGTDVTHRL
HHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHCCCHHHHCCCCCCCCHHHHHH
RAGHWSIQRQLDLHGLRTDEAREALGEFIRLAHRTGLRCVRVVHGKGLGSPGRTPVLKGR
HHCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCHHHHHH
VQRWLVQKKEVLAFVQARPAEGGAGALVVLLQPGRQRTATARWPAG
HHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCC
>Mature Secondary Structure 
TVKARSLQDLQPLRKALAEAAEREARLLRERQEAARRARAERMLFQDAVGPVQALRGTQ
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
ERRWHVPEPPEPQPVQRELDEERVLHESISDEFDVSTLLDVDDQLSFRRPGIGTDVTHRL
HHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHCCCHHHHCCCCCCCCHHHHHH
RAGHWSIQRQLDLHGLRTDEAREALGEFIRLAHRTGLRCVRVVHGKGLGSPGRTPVLKGR
HHCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCHHHHHH
VQRWLVQKKEVLAFVQARPAEGGAGALVVLLQPGRQRTATARWPAG
HHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]