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The map label for this gene is fecI [C]

Identifier: 120612380

GI number: 120612380

Start: 4146297

End: 4146830

Strand: Reverse

Name: fecI [C]

Synonym: Aave_3737

Alternate gene names: 120612380

Gene position: 4146830-4146297 (Counterclockwise)

Preceding gene: 120612386

Following gene: 120612379

Centisome position: 77.47

GC content: 68.73

Gene sequence:

>534_bases
ATGCTTATGTCCTTCATGCCGTTGCCCGAACCTTCCCTGGCCGATGTGTTCGTCGCTCACCGTGCGCAGTTGTGGCGGGT
GGCGCGGCAGATCGTCCATACCGAGGATCTGGCGGACGACGTGGTGCAGGACGCCTACCTGAAGCTCGCGGAAGGGCCCG
GGCGCGTGGCGGAGCGGCCCATCGGCTATTGCTGCCAGGTGGTGCGCAACCTCGCGCTGGACTACTGCCGCAGGCACCGG
GTGGAGGCGAGCTACCGCACCTTCGACGTGGACGTGGAGGCCATCGACGTGCCGTGCCATCGCTCCCCCGACCGCCACAT
GTGCGAGCAGCAGGTGATCCACGCGATCGACGAGGTGCTCGCGCAACTGCCGCCGCGCACGCGCATGGTGTTCGAGCTCT
ACCGCATCGAGGGCCTGACGCAGCGCCAGATCGCCGAACGCCTCGGCTGCGCGCTGGGGCTGGTGAACGGCCTGATCGCG
GAGGCGGCGAAGGCGGTGGCGCGCTGCCGGGTCCACATGATGGCCGGGCAATGA

Upstream 100 bases:

>100_bases
GCGGTGCAACTTCATAAATACAAATAATTCGCATTACTTGTTTTGTTTGTATCATCGCTTTCCGCGCGTCGGGACCACCG
CCGCCCATTCCAGGAAAGCG

Downstream 100 bases:

>100_bases
CCCCGGTCCTGCCCCGCGCGGCCGGCTGACGGGGCGGCCGGCCCGGGGCAGGGCGCCCCGGGTGGCGGCTTACTGTCGGG
ATGCGCTAGGCTCGGCGCAT

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: Extracytoplasmic-Function Sigma-70 Factor; Extracytoplasmic-Function Sigma-70 Factor PvdS; Sigma-; RNA Polymerase Sigma-24 Subunit ECF Subfamily; RNA Polymerase Sigma Factor Sigma-70 Family; Sigma Factor; ECF Subfamily RNA Polymerase Sigma Factor; RNA Polymerase Sigma Factor; RNA Polymerase Sigma Factor FecI; RNA Polymerase Sigma Factor FECI Protein; Ferric Regulator Sigma-24 Subunit; DNA-Directed RNA Polymerase Sigma-E/Sigma-24/FecI; Fec I Like Protein; ECF Sigma Factor; RNA Polymerase ECF-Subfamily Sigma-70 Factor; RNA Polymerase ECF-Family Sigma Factor; RNA Polymerase Sigma Factor FecI Family

Number of amino acids: Translated: 177; Mature: 177

Protein sequence:

>177_residues
MLMSFMPLPEPSLADVFVAHRAQLWRVARQIVHTEDLADDVVQDAYLKLAEGPGRVAERPIGYCCQVVRNLALDYCRRHR
VEASYRTFDVDVEAIDVPCHRSPDRHMCEQQVIHAIDEVLAQLPPRTRMVFELYRIEGLTQRQIAERLGCALGLVNGLIA
EAAKAVARCRVHMMAGQ

Sequences:

>Translated_177_residues
MLMSFMPLPEPSLADVFVAHRAQLWRVARQIVHTEDLADDVVQDAYLKLAEGPGRVAERPIGYCCQVVRNLALDYCRRHR
VEASYRTFDVDVEAIDVPCHRSPDRHMCEQQVIHAIDEVLAQLPPRTRMVFELYRIEGLTQRQIAERLGCALGLVNGLIA
EAAKAVARCRVHMMAGQ
>Mature_177_residues
MLMSFMPLPEPSLADVFVAHRAQLWRVARQIVHTEDLADDVVQDAYLKLAEGPGRVAERPIGYCCQVVRNLALDYCRRHR
VEASYRTFDVDVEAIDVPCHRSPDRHMCEQQVIHAIDEVLAQLPPRTRMVFELYRIEGLTQRQIAERLGCALGLVNGLIA
EAAKAVARCRVHMMAGQ

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Regulates The Fec Genes For Iron Dicitrate Transport (Probable). [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20047; Mature: 20047

Theoretical pI: Translated: 6.86; Mature: 6.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.0 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
7.9 %Cys+Met (Translated Protein)
4.0 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
7.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLMSFMPLPEPSLADVFVAHRAQLWRVARQIVHTEDLADDVVQDAYLKLAEGPGRVAERP
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCC
IGYCCQVVRNLALDYCRRHRVEASYRTFDVDVEAIDVPCHRSPDRHMCEQQVIHAIDEVL
HHHHHHHHHHHHHHHHHHHHCCHHHHEEECCCEEEECCCCCCCHHHHHHHHHHHHHHHHH
AQLPPRTRMVFELYRIEGLTQRQIAERLGCALGLVNGLIAEAAKAVARCRVHMMAGQ
HHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLMSFMPLPEPSLADVFVAHRAQLWRVARQIVHTEDLADDVVQDAYLKLAEGPGRVAERP
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCC
IGYCCQVVRNLALDYCRRHRVEASYRTFDVDVEAIDVPCHRSPDRHMCEQQVIHAIDEVL
HHHHHHHHHHHHHHHHHHHHCCHHHHEEECCCEEEECCCCCCCHHHHHHHHHHHHHHHHH
AQLPPRTRMVFELYRIEGLTQRQIAERLGCALGLVNGLIAEAAKAVARCRVHMMAGQ
HHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA