Click here to switch to the map view.

The map label for this gene is pvdA [H]

Identifier: 120612366

GI number: 120612366

Start: 4109661

End: 4111019

Strand: Reverse

Name: pvdA [H]

Synonym: Aave_3723

Alternate gene names: 120612366

Gene position: 4111019-4109661 (Counterclockwise)

Preceding gene: 120612367

Following gene: 120612365

Centisome position: 76.8

GC content: 70.49

Gene sequence:

>1359_bases
ATGCAGCACATCCATGACCTGATCGGTATCGGCTTCGGTCCCTCCAACGTGGGGCTGGCCATCGCGCTCGAAGAGCACCG
CGGCACCCACGGCCGCGCGCCGCAGGCCTTCTTCATCGAGCGCCAGCCGGCCTTCGCGTGGCACCCCAACATGCTGCTGG
ACCACGCGCACATGCAGATCTCCTTCCTCAAAGACCTCGCCACCCTGCGCAATCCGCAAAGCCGCTTCACCTTCCTCAAC
TACCTGCACGAGCAGGGCCGGCTGCAGGACTTCATCAACCTCAAGAGCTTCTATCCCAGCCGCCACGAGTTCAACGACTA
CCTGGGCTGGGCCGCGCGCCAGTTCGAGGGCCAGTGCGCCTATGGCGAAGAGGTGTTCGAGGTCCTGCCGGAGCCCGGCC
CGGACGGCACCGTCGAGCAACTGCGCGTGCGCTCGCGCAACGCGGCCGGCCGCGTGCAGGAGCGCCTGGCGCGCAACCTC
ATCGTCGGCGTGGGCGGCACCGCGCGCATCCCCGAAGTGTTCCGCGGCCTGCAGGGCGACCCGCGCGTCTTCCACTCCAG
CACCTACCTGCGCGACATCGCCCGCCAGGGCGCGGCGCGCAGCATCGCCCTGATCGGGGCCGGGCAGAGCGCCGCGGAAA
TCTTCATGGACCTGCAGGGCCGCGCCCATGCGCCCGAGGTGGACTGGGTGATGCGCGCCCGCGCCATCCGCCCCTCCGAC
GACAGCCCCTTCGTCAACGAAATCTTCAACGCCGACTTCACCGACTACATGTTCGGCCGCTCCGGCCCGGAGCGCGAATC
GCTGCTGCGCGAATACGCCCACACCAACTACGCCGTGGCCGACCTGGAACTGATCCAGCAGGTCTTCAAGACCTTCTACG
AACAGCGCGTGACCGGCGGCCGGCGCCTGCGCATGCTGCGCCAGCACGAAGTGCGGGCTGCCCGCGCCGATGCCTCCGGC
GTCTATTTCACGTTCCATGACCGCGAATCGGGCGAGGAAAGCACCGTGCGCTACGACGCCGCCGTGCTGGCCACCGGCTA
CGAACGCGCCGCCCACCGCGACGTGCTCGCACCGCTGGCCCCGTACCTGGGCGACTTCACCGTGGACCGCCACTACCGCG
TGCAGGCCGCCCCCGGCTTCCGGCCCGCGATCTTCCTGCAGGGCGCCTGCGAATCCAGCCACGGCCTGAGCGACACGCTG
CTGTCCGTCACCGCCGTCCGCACCGGAGAAATCGGCCAGGTCCTCGCCGCCGCGCTGCCCCCGGCCCGCGAGCCGCTGCG
CACGCGCGGCCCGGACGCCCCGGCACGCGGCAGCGCGGGGGACGGCGAGCGGGAGACGCAGCACCTGCACGTGGCCTGA

Upstream 100 bases:

>100_bases
CGTGCGCGCCGGCCGCGAAACCCTGGCCGCCTGACCGTCCGAATCCCGGTGCGGCCGCGAGCCGGCCGGCCCGTCCCTTT
TTCAAAGGAGTTGTCATCCC

Downstream 100 bases:

>100_bases
GGCCGCCGGGTCCGTGCCCGCGGCGGCCATGCCCGGCACCGGCACCGGCACCGGCAGAGCAGGGCCGCTGCGCCTGTACC
CGCCATGCGGACAATCCGGG

Product: L-lysine 6-monooxygenase

Products: NA

Alternate protein names: L-ornithine N(5)-oxygenase [H]

Number of amino acids: Translated: 452; Mature: 452

Protein sequence:

>452_residues
MQHIHDLIGIGFGPSNVGLAIALEEHRGTHGRAPQAFFIERQPAFAWHPNMLLDHAHMQISFLKDLATLRNPQSRFTFLN
YLHEQGRLQDFINLKSFYPSRHEFNDYLGWAARQFEGQCAYGEEVFEVLPEPGPDGTVEQLRVRSRNAAGRVQERLARNL
IVGVGGTARIPEVFRGLQGDPRVFHSSTYLRDIARQGAARSIALIGAGQSAAEIFMDLQGRAHAPEVDWVMRARAIRPSD
DSPFVNEIFNADFTDYMFGRSGPERESLLREYAHTNYAVADLELIQQVFKTFYEQRVTGGRRLRMLRQHEVRAARADASG
VYFTFHDRESGEESTVRYDAAVLATGYERAAHRDVLAPLAPYLGDFTVDRHYRVQAAPGFRPAIFLQGACESSHGLSDTL
LSVTAVRTGEIGQVLAAALPPAREPLRTRGPDAPARGSAGDGERETQHLHVA

Sequences:

>Translated_452_residues
MQHIHDLIGIGFGPSNVGLAIALEEHRGTHGRAPQAFFIERQPAFAWHPNMLLDHAHMQISFLKDLATLRNPQSRFTFLN
YLHEQGRLQDFINLKSFYPSRHEFNDYLGWAARQFEGQCAYGEEVFEVLPEPGPDGTVEQLRVRSRNAAGRVQERLARNL
IVGVGGTARIPEVFRGLQGDPRVFHSSTYLRDIARQGAARSIALIGAGQSAAEIFMDLQGRAHAPEVDWVMRARAIRPSD
DSPFVNEIFNADFTDYMFGRSGPERESLLREYAHTNYAVADLELIQQVFKTFYEQRVTGGRRLRMLRQHEVRAARADASG
VYFTFHDRESGEESTVRYDAAVLATGYERAAHRDVLAPLAPYLGDFTVDRHYRVQAAPGFRPAIFLQGACESSHGLSDTL
LSVTAVRTGEIGQVLAAALPPAREPLRTRGPDAPARGSAGDGERETQHLHVA
>Mature_452_residues
MQHIHDLIGIGFGPSNVGLAIALEEHRGTHGRAPQAFFIERQPAFAWHPNMLLDHAHMQISFLKDLATLRNPQSRFTFLN
YLHEQGRLQDFINLKSFYPSRHEFNDYLGWAARQFEGQCAYGEEVFEVLPEPGPDGTVEQLRVRSRNAAGRVQERLARNL
IVGVGGTARIPEVFRGLQGDPRVFHSSTYLRDIARQGAARSIALIGAGQSAAEIFMDLQGRAHAPEVDWVMRARAIRPSD
DSPFVNEIFNADFTDYMFGRSGPERESLLREYAHTNYAVADLELIQQVFKTFYEQRVTGGRRLRMLRQHEVRAARADASG
VYFTFHDRESGEESTVRYDAAVLATGYERAAHRDVLAPLAPYLGDFTVDRHYRVQAAPGFRPAIFLQGACESSHGLSDTL
LSVTAVRTGEIGQVLAAALPPAREPLRTRGPDAPARGSAGDGERETQHLHVA

Specific function: Catalyzes the hydroxylation of L-ornithine (L-Orn) which is later incorporated in pyoverdin. Pyoverdin is a hydroxamate siderophore composed of a 6,7-dihydroxyquinoline-containing fluorescent chromophore joined to the N-terminus of a partly cyclic octapep

COG id: COG3486

COG function: function code Q; Lysine/ornithine N-monooxygenase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the lysine N(6)-hydroxylase/L-ornithine N(5)-oxygenase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013027 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 50468; Mature: 50468

Theoretical pI: Translated: 6.94; Mature: 6.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQHIHDLIGIGFGPSNVGLAIALEEHRGTHGRAPQAFFIERQPAFAWHPNMLLDHAHMQI
CCHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCEEEEECCCCCEECCCHHHHHHHHHH
SFLKDLATLRNPQSRFTFLNYLHEQGRLQDFINLKSFYPSRHEFNDYLGWAARQFEGQCA
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCC
YGEEVFEVLPEPGPDGTVEQLRVRSRNAAGRVQERLARNLIVGVGGTARIPEVFRGLQGD
CHHHHHHHCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHEEEECCCCCHHHHHHCCCCCC
PRVFHSSTYLRDIARQGAARSIALIGAGQSAAEIFMDLQGRAHAPEVDWVMRARAIRPSD
CCEEEHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCC
DSPFVNEIFNADFTDYMFGRSGPERESLLREYAHTNYAVADLELIQQVFKTFYEQRVTGG
CCCHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCH
RRLRMLRQHEVRAARADASGVYFTFHDRESGEESTVRYDAAVLATGYERAAHRDVLAPLA
HHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHEEEHHHHHHHCHHHHHHHHHHHHHH
PYLGDFTVDRHYRVQAAPGFRPAIFLQGACESSHGLSDTLLSVTAVRTGEIGQVLAAALP
HHHCCEEECCEEEEEECCCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCC
PAREPLRTRGPDAPARGSAGDGERETQHLHVA
CCCCCHHHCCCCCCCCCCCCCCCCCCCEEECC
>Mature Secondary Structure
MQHIHDLIGIGFGPSNVGLAIALEEHRGTHGRAPQAFFIERQPAFAWHPNMLLDHAHMQI
CCHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCEEEEECCCCCEECCCHHHHHHHHHH
SFLKDLATLRNPQSRFTFLNYLHEQGRLQDFINLKSFYPSRHEFNDYLGWAARQFEGQCA
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCC
YGEEVFEVLPEPGPDGTVEQLRVRSRNAAGRVQERLARNLIVGVGGTARIPEVFRGLQGD
CHHHHHHHCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHEEEECCCCCHHHHHHCCCCCC
PRVFHSSTYLRDIARQGAARSIALIGAGQSAAEIFMDLQGRAHAPEVDWVMRARAIRPSD
CCEEEHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCC
DSPFVNEIFNADFTDYMFGRSGPERESLLREYAHTNYAVADLELIQQVFKTFYEQRVTGG
CCCHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCH
RRLRMLRQHEVRAARADASGVYFTFHDRESGEESTVRYDAAVLATGYERAAHRDVLAPLA
HHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHEEEHHHHHHHCHHHHHHHHHHHHHH
PYLGDFTVDRHYRVQAAPGFRPAIFLQGACESSHGLSDTLLSVTAVRTGEIGQVLAAALP
HHHCCEEECCEEEEEECCCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCC
PAREPLRTRGPDAPARGSAGDGERETQHLHVA
CCCCCHHHCCCCCCCCCCCCCCCCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8106324; 10984043 [H]