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The map label for this gene is recJ [H]

Identifier: 120612346

GI number: 120612346

Start: 4078896

End: 4080611

Strand: Direct

Name: recJ [H]

Synonym: Aave_3702

Alternate gene names: 120612346

Gene position: 4078896-4080611 (Clockwise)

Preceding gene: 120612345

Following gene: 120612347

Centisome position: 76.2

GC content: 72.79

Gene sequence:

>1716_bases
ATGAAGATCGTGGCCCGGGACATTCCGCCCCGCGCCGTGTGGGCGCTGGAGCAGGCGGGCGTGCATCCGCTGCTCGCGCG
GCTGTACGCGGCGCGCGGCGTGACCGCCCACGACGAGCTCGACGACGCGCTGGCGCGGCTGCTGCCGCCGCCCGGTCTGC
GGGGCACGCGCGAGGCCGCGGCGCTGCTGGCCGATGCGATCGCGCAGGACCGGCGCATCGTCGTGGTGGCCGATTACGAC
TGCGACGGGGCCACCGCGTGCGCCGTGGCGGTGCGCGGCCTGCGGCTGCTGGGCGCGCGCCAGGTGGACTACCTGGTGCC
CGACCGCATCGCCGACGGCTACGGCCTGAGCCCGGCCATCGCGCGCCGCGTGCGCGAACGCGGGGCCGACCTGCTGGTCA
CGGTGGACAACGGCATCGCCAGCGTGGAGGGCGTGGCCGAGGCCAAGGCGCTGGGCCTCTCGGTGCTGGTCACGGACCAC
CACCTGCCCGGCCCGGAACTGCCGCAGGCCGATGCCATCGTGAACCCCAACCAGCCGGGCTGCAGCTTCGAGAGCAAGTC
CATCGCCGGCGTGGGCGTGATGTTCTACGTGCTGATGGCGCTGCGCGCGGAACTGCGCGAACGCGGCGTGTTCGACAAGG
CCAGCCAGCCGAAGCTGGAGCCGCTGCTGCCCCTGGTCGCGCTGGGCACGGTGGCCGACGTGGTGCGGCTGGACGCGAAC
AACCGGCGCCTGGTGGCGCAGGGGCTCAAGCGCATCCGCGCGGGCCACATGCCGGCGGGTATCGCGGCGCTGTTCGACGC
GGCGGGCCGCAAGGCGGCCGTGGCGACGACCTTCGATTTCGGGTTTGCGCTGGGCCCGCGCATCAACGCGGCCGGGCGCC
TCGCGGACATGACGCTGGGCATCGAATGCCTGCTGACCGACGACCCGGGCCGGGCCGCGGAACTGGCGCGCACGCTCGAC
GCGATCAACCGCGAGCGGCGCGAGATCGAAGGCGGCATGCGCGAGCAGGCCCTCCTGATGGCCGAGAGCCTGTTCGGCGA
GAACGACGAGCCGCCGGCCGCGGTGAGCGTGTGGGACCCGGACTTCCACGAGGGCGTGGTCGGCATCGTGGCCTCGCGCA
TCAAGGACCGGCTGCACCGGCCGACCTTCGTGTTCGCCACCAGCAGCGCGCCGGGCAAGGAGGACGAGATCAAGGGCTCG
GGCCGCTCCATTCCGGGCTTCCACCTGCGCGATGCGCTCGACCTGGTGGCCAAGCGCCATCCGGGCGTGATCCTGAAGTT
CGGCGGCCATGCGATGGCCGCCGGCTGCACGGTGGCCAAGGACCGGTTCCCGGTGTTCGAGCGCGCGTTCGCCCAGGTGG
CCCAGGAGTGGCTGGATGCCGCGACCCTGATGCGCCGGCTCGACACCGACGGGCCGCTCTCGCCGGAATACTGCCGCGCC
GAACTCGTGGACACCCTGCACCGCGAGGTCTGGGGCCAGGGCTTCGCGCCGCCGACCTTCAGCGAGGAGGTGGAAATCAT
CAGCCAGCGCCTCGTGGGCGAAGGGAAGAACCACCTGTCGCTCAAGCTGCTGCACCAGGGCCGCCCCGTGGACGGCATCT
GGTTCGGCCACACGGAGCCGCTGCCGGCGCGCGTGCTGCTGGCGTTCCGGCTCGACGTGAACGAGTGGAAGGGCGAGCGG
CGGGTGCAGTTCCTGGTGGAAGGCGCGCAGCTCTAG

Upstream 100 bases:

>100_bases
AGCGCAGCGCCATGGCCTGGGAGACGGCGCCCGCGGGCCTGCTGGAGCGCCTGCGCCGCAGGCTGCGGCCGGTGCGCTTC
CGATCCGTGCAGGAGCAGCT

Downstream 100 bases:

>100_bases
CCTGCCCGGCCCTCCCCTGCCCCCTGCCGGTGCCGGGGTGCAACAACACATCCGCGGTCCGCGCCGGACAGGGCACCCGG
TGGCCTGGGCCGGGGCGCGG

Product: single-stranded-DNA-specific exonuclease RecJ

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 571; Mature: 571

Protein sequence:

>571_residues
MKIVARDIPPRAVWALEQAGVHPLLARLYAARGVTAHDELDDALARLLPPPGLRGTREAAALLADAIAQDRRIVVVADYD
CDGATACAVAVRGLRLLGARQVDYLVPDRIADGYGLSPAIARRVRERGADLLVTVDNGIASVEGVAEAKALGLSVLVTDH
HLPGPELPQADAIVNPNQPGCSFESKSIAGVGVMFYVLMALRAELRERGVFDKASQPKLEPLLPLVALGTVADVVRLDAN
NRRLVAQGLKRIRAGHMPAGIAALFDAAGRKAAVATTFDFGFALGPRINAAGRLADMTLGIECLLTDDPGRAAELARTLD
AINRERREIEGGMREQALLMAESLFGENDEPPAAVSVWDPDFHEGVVGIVASRIKDRLHRPTFVFATSSAPGKEDEIKGS
GRSIPGFHLRDALDLVAKRHPGVILKFGGHAMAAGCTVAKDRFPVFERAFAQVAQEWLDAATLMRRLDTDGPLSPEYCRA
ELVDTLHREVWGQGFAPPTFSEEVEIISQRLVGEGKNHLSLKLLHQGRPVDGIWFGHTEPLPARVLLAFRLDVNEWKGER
RVQFLVEGAQL

Sequences:

>Translated_571_residues
MKIVARDIPPRAVWALEQAGVHPLLARLYAARGVTAHDELDDALARLLPPPGLRGTREAAALLADAIAQDRRIVVVADYD
CDGATACAVAVRGLRLLGARQVDYLVPDRIADGYGLSPAIARRVRERGADLLVTVDNGIASVEGVAEAKALGLSVLVTDH
HLPGPELPQADAIVNPNQPGCSFESKSIAGVGVMFYVLMALRAELRERGVFDKASQPKLEPLLPLVALGTVADVVRLDAN
NRRLVAQGLKRIRAGHMPAGIAALFDAAGRKAAVATTFDFGFALGPRINAAGRLADMTLGIECLLTDDPGRAAELARTLD
AINRERREIEGGMREQALLMAESLFGENDEPPAAVSVWDPDFHEGVVGIVASRIKDRLHRPTFVFATSSAPGKEDEIKGS
GRSIPGFHLRDALDLVAKRHPGVILKFGGHAMAAGCTVAKDRFPVFERAFAQVAQEWLDAATLMRRLDTDGPLSPEYCRA
ELVDTLHREVWGQGFAPPTFSEEVEIISQRLVGEGKNHLSLKLLHQGRPVDGIWFGHTEPLPARVLLAFRLDVNEWKGER
RVQFLVEGAQL
>Mature_571_residues
MKIVARDIPPRAVWALEQAGVHPLLARLYAARGVTAHDELDDALARLLPPPGLRGTREAAALLADAIAQDRRIVVVADYD
CDGATACAVAVRGLRLLGARQVDYLVPDRIADGYGLSPAIARRVRERGADLLVTVDNGIASVEGVAEAKALGLSVLVTDH
HLPGPELPQADAIVNPNQPGCSFESKSIAGVGVMFYVLMALRAELRERGVFDKASQPKLEPLLPLVALGTVADVVRLDAN
NRRLVAQGLKRIRAGHMPAGIAALFDAAGRKAAVATTFDFGFALGPRINAAGRLADMTLGIECLLTDDPGRAAELARTLD
AINRERREIEGGMREQALLMAESLFGENDEPPAAVSVWDPDFHEGVVGIVASRIKDRLHRPTFVFATSSAPGKEDEIKGS
GRSIPGFHLRDALDLVAKRHPGVILKFGGHAMAAGCTVAKDRFPVFERAFAQVAQEWLDAATLMRRLDTDGPLSPEYCRA
ELVDTLHREVWGQGFAPPTFSEEVEIISQRLVGEGKNHLSLKLLHQGRPVDGIWFGHTEPLPARVLLAFRLDVNEWKGER
RVQFLVEGAQL

Specific function: Single-stranded-DNA-specific exonuclease. Required for many types of recombinational events, although the stringency of the requirement for recJ appears to vary with the type of recombinational event monitored and the other recombination gene products whi

COG id: COG0608

COG function: function code L; Single-stranded DNA-specific exonuclease

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recJ family [H]

Homologues:

Organism=Escherichia coli, GI1789259, Length=554, Percent_Identity=48.1949458483755, Blast_Score=498, Evalue=1e-142,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008279
- InterPro:   IPR003156
- InterPro:   IPR001667
- InterPro:   IPR004610 [H]

Pfam domain/function: PF01368 DHH; PF02272 DHHA1 [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 61726; Mature: 61726

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIVARDIPPRAVWALEQAGVHPLLARLYAARGVTAHDELDDALARLLPPPGLRGTREAA
CCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCHHHHH
ALLADAIAQDRRIVVVADYDCDGATACAVAVRGLRLLGARQVDYLVPDRIADGYGLSPAI
HHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCHHCCHHHCCCCCCCHHH
ARRVRERGADLLVTVDNGIASVEGVAEAKALGLSVLVTDHHLPGPELPQADAIVNPNQPG
HHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCEEEEEECCCCCCCCCCCCCCEECCCCCC
CSFESKSIAGVGVMFYVLMALRAELRERGVFDKASQPKLEPLLPLVALGTVADVVRLDAN
CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
NRRLVAQGLKRIRAGHMPAGIAALFDAAGRKAAVATTFDFGFALGPRINAAGRLADMTLG
CCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCHHEEEEC
IECLLTDDPGRAAELARTLDAINRERREIEGGMREQALLMAESLFGENDEPPAAVSVWDP
EEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCEEEECCC
DFHEGVVGIVASRIKDRLHRPTFVFATSSAPGKEDEIKGSGRSIPGFHLRDALDLVAKRH
CHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC
PGVILKFGGHAMAAGCTVAKDRFPVFERAFAQVAQEWLDAATLMRRLDTDGPLSPEYCRA
CCEEEEECCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
ELVDTLHREVWGQGFAPPTFSEEVEIISQRLVGEGKNHLSLKLLHQGRPVDGIWFGHTEP
HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCEECCCCCC
LPARVLLAFRLDVNEWKGERRVQFLVEGAQL
CHHHEEEEEEECHHHCCCCCEEEHEECCCCC
>Mature Secondary Structure
MKIVARDIPPRAVWALEQAGVHPLLARLYAARGVTAHDELDDALARLLPPPGLRGTREAA
CCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCHHHHH
ALLADAIAQDRRIVVVADYDCDGATACAVAVRGLRLLGARQVDYLVPDRIADGYGLSPAI
HHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCHHCCHHHCCCCCCCHHH
ARRVRERGADLLVTVDNGIASVEGVAEAKALGLSVLVTDHHLPGPELPQADAIVNPNQPG
HHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCEEEEEECCCCCCCCCCCCCCEECCCCCC
CSFESKSIAGVGVMFYVLMALRAELRERGVFDKASQPKLEPLLPLVALGTVADVVRLDAN
CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
NRRLVAQGLKRIRAGHMPAGIAALFDAAGRKAAVATTFDFGFALGPRINAAGRLADMTLG
CCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCHHEEEEC
IECLLTDDPGRAAELARTLDAINRERREIEGGMREQALLMAESLFGENDEPPAAVSVWDP
EEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCEEEECCC
DFHEGVVGIVASRIKDRLHRPTFVFATSSAPGKEDEIKGSGRSIPGFHLRDALDLVAKRH
CHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC
PGVILKFGGHAMAAGCTVAKDRFPVFERAFAQVAQEWLDAATLMRRLDTDGPLSPEYCRA
CCEEEEECCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
ELVDTLHREVWGQGFAPPTFSEEVEIISQRLVGEGKNHLSLKLLHQGRPVDGIWFGHTEP
HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCEECCCCCC
LPARVLLAFRLDVNEWKGERRVQFLVEGAQL
CHHHEEEEEEECHHHCCCCCEEEHEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Hydrolase; Acting on ester bonds [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1987126; 9278503; 2649886 [H]