Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
---|---|
Accession | NC_008752 |
Length | 5,352,772 |
Click here to switch to the map view.
The map label for this gene is 120612243
Identifier: 120612243
GI number: 120612243
Start: 3966832
End: 3967842
Strand: Reverse
Name: 120612243
Synonym: Aave_3596
Alternate gene names: NA
Gene position: 3967842-3966832 (Counterclockwise)
Preceding gene: 120612244
Following gene: 120612242
Centisome position: 74.13
GC content: 63.6
Gene sequence:
>1011_bases ATGACTGACTATGCAATGACCGGCAAGAAGGGGACCGGCAAGAGCAAGAACACTGTGCGCCTTGCCCGGGACCGCTATCT GAAGCGCGGCCGCATGGTGGCCACGAATTTGGACATCGACCTCAAGGCCATGTTCGGCCCACGGTCCCGCCATACCTACA TCCGTGTCCCGGACAAGCCCACGGCTTTTGATCTGGAGGCGTGCGGCCACGGCAACCACGGTAGCAAAGATGAGGACACG GCCGGCATGATGGCCCTCGATGAGATGGGTACGTGGCTCAACACGCGGACCTTTGGCGACAAGGATCGCGCTGCGACGTT GGACTATTTGGCTCACGCCCGTAAGCACGGCTGGGACTGTTACTACATCATGCAGAACGTCGTCCAGGTCGATAAGCAGC TACGTGAGTCCTTCATTGAGCAGACTGTCCGGCACGTCCGCTTCGACAAGATCCGGTGGCCTTTGGTCGGCGGCATTCTC GGCTCCCTGTTCGGTGAGCGCGCGGCGTACATGCCCCGTTTCCATGCTGCCACTGCGCGCCTGGGCTGCAACCCGCAGGA GTTGGTCTGCGATCGCGCGACGTTTGTGGGTAAGGACCTGGAGGCCTGCTACGACACACAGCAGGTGTTTCGCGCTGACT ATCCTCACGGCACGCACACGGTCCTGAGCCCGTGGCATGTGGAGGGTCGCTACCTTCCTGATCCTCCGCTATCCGGTTGG CGTGCCTTCCTGGCTGCGTGGCGTCGTCCTCGCGGTATGCGCGTACCGCGGCCTTTGCCTCCGCCAGTTCATCCTGTCCC TGTTGCGTTTCGTCGTGCGCTGGATCTGTGCAGACAGTTGCCTGCGCATGAGCGCGTCCGCTGGGCTCGCGTCGTCAATC GCCATATCGATGCGTACATGGACCGTCAGCGCTGCGACCAGGCCGCTCACCATGTCGCCAGCCAGGCCGGCGCGAGTGCT GCTCCTGCCCCTGCGCAAGCGGGGGCGGGGGCGGCGCGCAGCGCCGCCTAA
Upstream 100 bases:
>100_bases TGCCGGCGGCGTCCTCTCCTGCATCGGTTCCGTCTGGGTCGGCTGCAACGTGTACCGACTGCAGCAGATTGGCACTATCA AGTTCACTTGAGGTTCGCGC
Downstream 100 bases:
>100_bases TTTATTCATAACTCACTTTGGAACACATGCAGGAAATTTACGTGTATCGCCCGGATTACCGGTTGTCGTGCATGGCACGG CTGGCGGTGGTCGGTTTGGG
Product: zonular occludens toxin
Products: NA
Alternate protein names: IKe Filamentous Prophage; Gene I Protein; Phage Head/Capsid Assembly Protein
Number of amino acids: Translated: 336; Mature: 335
Protein sequence:
>336_residues MTDYAMTGKKGTGKSKNTVRLARDRYLKRGRMVATNLDIDLKAMFGPRSRHTYIRVPDKPTAFDLEACGHGNHGSKDEDT AGMMALDEMGTWLNTRTFGDKDRAATLDYLAHARKHGWDCYYIMQNVVQVDKQLRESFIEQTVRHVRFDKIRWPLVGGIL GSLFGERAAYMPRFHAATARLGCNPQELVCDRATFVGKDLEACYDTQQVFRADYPHGTHTVLSPWHVEGRYLPDPPLSGW RAFLAAWRRPRGMRVPRPLPPPVHPVPVAFRRALDLCRQLPAHERVRWARVVNRHIDAYMDRQRCDQAAHHVASQAGASA APAPAQAGAGAARSAA
Sequences:
>Translated_336_residues MTDYAMTGKKGTGKSKNTVRLARDRYLKRGRMVATNLDIDLKAMFGPRSRHTYIRVPDKPTAFDLEACGHGNHGSKDEDT AGMMALDEMGTWLNTRTFGDKDRAATLDYLAHARKHGWDCYYIMQNVVQVDKQLRESFIEQTVRHVRFDKIRWPLVGGIL GSLFGERAAYMPRFHAATARLGCNPQELVCDRATFVGKDLEACYDTQQVFRADYPHGTHTVLSPWHVEGRYLPDPPLSGW RAFLAAWRRPRGMRVPRPLPPPVHPVPVAFRRALDLCRQLPAHERVRWARVVNRHIDAYMDRQRCDQAAHHVASQAGASA APAPAQAGAGAARSAA >Mature_335_residues TDYAMTGKKGTGKSKNTVRLARDRYLKRGRMVATNLDIDLKAMFGPRSRHTYIRVPDKPTAFDLEACGHGNHGSKDEDTA GMMALDEMGTWLNTRTFGDKDRAATLDYLAHARKHGWDCYYIMQNVVQVDKQLRESFIEQTVRHVRFDKIRWPLVGGILG SLFGERAAYMPRFHAATARLGCNPQELVCDRATFVGKDLEACYDTQQVFRADYPHGTHTVLSPWHVEGRYLPDPPLSGWR AFLAAWRRPRGMRVPRPLPPPVHPVPVAFRRALDLCRQLPAHERVRWARVVNRHIDAYMDRQRCDQAAHHVASQAGASAA PAPAQAGAGAARSAA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 37792; Mature: 37660
Theoretical pI: Translated: 10.13; Mature: 10.13
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 5.4 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 5.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDYAMTGKKGTGKSKNTVRLARDRYLKRGRMVATNLDIDLKAMFGPRSRHTYIRVPDKP CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCEEEEEEECCCCCCCEEECCCCC TAFDLEACGHGNHGSKDEDTAGMMALDEMGTWLNTRTFGDKDRAATLDYLAHARKHGWDC CEEEHHHCCCCCCCCCCCHHHHHHHHHHHCCHHHCCCCCCCHHHHHHHHHHHHHHCCCHH YYIMQNVVQVDKQLRESFIEQTVRHVRFDKIRWPLVGGILGSLFGERAAYMPRFHAATAR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH LGCNPQELVCDRATFVGKDLEACYDTQQVFRADYPHGTHTVLSPWHVEGRYLPDPPLSGW CCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCCCCCCCCHHH RAFLAAWRRPRGMRVPRPLPPPVHPVPVAFRRALDLCRQLPAHERVRWARVVNRHIDAYM HHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH DRQRCDQAAHHVASQAGASAAPAPAQAGAGAARSAA HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure TDYAMTGKKGTGKSKNTVRLARDRYLKRGRMVATNLDIDLKAMFGPRSRHTYIRVPDKP CCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCEEEEEEECCCCCCCEEECCCCC TAFDLEACGHGNHGSKDEDTAGMMALDEMGTWLNTRTFGDKDRAATLDYLAHARKHGWDC CEEEHHHCCCCCCCCCCCHHHHHHHHHHHCCHHHCCCCCCCHHHHHHHHHHHHHHCCCHH YYIMQNVVQVDKQLRESFIEQTVRHVRFDKIRWPLVGGILGSLFGERAAYMPRFHAATAR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH LGCNPQELVCDRATFVGKDLEACYDTQQVFRADYPHGTHTVLSPWHVEGRYLPDPPLSGW CCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCCCCCCCCHHH RAFLAAWRRPRGMRVPRPLPPPVHPVPVAFRRALDLCRQLPAHERVRWARVVNRHIDAYM HHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH DRQRCDQAAHHVASQAGASAAPAPAQAGAGAARSAA HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA