Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
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Accession | NC_008752 |
Length | 5,352,772 |
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The map label for this gene is rph [H]
Identifier: 120612226
GI number: 120612226
Start: 3950506
End: 3951267
Strand: Reverse
Name: rph [H]
Synonym: Aave_3579
Alternate gene names: 120612226
Gene position: 3951267-3950506 (Counterclockwise)
Preceding gene: 120612227
Following gene: 120612225
Centisome position: 73.82
GC content: 71.52
Gene sequence:
>762_bases ATGCCTTCATCTTCCCTTTCCCATCCTTTCGAGCGCAGCGCGGGCCGCGGCGTCGATGCCCTGCGCCCCGTGCGCATCAC CCGCCACTACACCATGCACGCGGAAGGCTCGGTGCTGGTCGAGTTCGGGCATACGAAGGTGCTGTGCACGGCTTCTGTCG AGGAGCGGGTGCCGCCGCACAAGCGCGGCAGCGGGGAAGGCTGGGTGACGGCGGAGTACGGCATGCTGCCGCGCGCGACG CACACCCGCAGCGACCGCGAGGCCGCGCGGGGCAAGCAGAGCGGCCGCACGCAGGAAATCCAGCGCCTGATCGGCCGCAG CCTGCGGGCGGTGTTCGACCTGCGCGCGCTGGGCGAGCGCACCATCCAGCTCGATTGCGACGTGCTGCAGGCCGACGGCG GTACGCGCACGGCGGCCATCACCGGTGCCTGGGTCGCCGCGCACGACGCCGTGTCGGCCCTGCTGGAGGGCGGCAAGATC GCCGCGTCGCCCATCACGGCGCCGCTGGCGGCCGTGTCCGTGGGCATCGTGCAGGGCACACCGCTGCTCGACCTGGAGTA CACCGAGGATGTGCAGTGCGACACCGACATGAACGTCGTCATGATGGACGGCGGCCGGTTCGTCGAAGTGCAGGGGACGG CGGAAGGCATCGCGTTCACGCGCAGCGAGATGGACCGGCTGCTCGACCTGGCCGCCCGGGGCGTGGACGCCCTCATCGCC CTGCAGCGGCAGGCGTTGTCGGCGCCGGCATCCGGCCTGTGA
Upstream 100 bases:
>100_bases GCTGCCTGAGCCTGCGTTGCGTCCTCCGGTGCGGATCGCGCGCCTTCCATGCCGGTCGCGGGCCGGATGGCCCATTCACT CCTTTCACGCGGTGCAACCC
Downstream 100 bases:
>100_bases ACCCCTTTCCCGAAAGCATTCCCGCCATGAAACTCGTCCTCGCATCCAACAACCGCGGCAAGCTGGCCGAGCTGCAGAGC ATGTTCTCTCCCCTGGGCGT
Product: ribonuclease PH
Products: NA
Alternate protein names: RNase PH; tRNA nucleotidyltransferase [H]
Number of amino acids: Translated: 253; Mature: 252
Protein sequence:
>253_residues MPSSSLSHPFERSAGRGVDALRPVRITRHYTMHAEGSVLVEFGHTKVLCTASVEERVPPHKRGSGEGWVTAEYGMLPRAT HTRSDREAARGKQSGRTQEIQRLIGRSLRAVFDLRALGERTIQLDCDVLQADGGTRTAAITGAWVAAHDAVSALLEGGKI AASPITAPLAAVSVGIVQGTPLLDLEYTEDVQCDTDMNVVMMDGGRFVEVQGTAEGIAFTRSEMDRLLDLAARGVDALIA LQRQALSAPASGL
Sequences:
>Translated_253_residues MPSSSLSHPFERSAGRGVDALRPVRITRHYTMHAEGSVLVEFGHTKVLCTASVEERVPPHKRGSGEGWVTAEYGMLPRAT HTRSDREAARGKQSGRTQEIQRLIGRSLRAVFDLRALGERTIQLDCDVLQADGGTRTAAITGAWVAAHDAVSALLEGGKI AASPITAPLAAVSVGIVQGTPLLDLEYTEDVQCDTDMNVVMMDGGRFVEVQGTAEGIAFTRSEMDRLLDLAARGVDALIA LQRQALSAPASGL >Mature_252_residues PSSSLSHPFERSAGRGVDALRPVRITRHYTMHAEGSVLVEFGHTKVLCTASVEERVPPHKRGSGEGWVTAEYGMLPRATH TRSDREAARGKQSGRTQEIQRLIGRSLRAVFDLRALGERTIQLDCDVLQADGGTRTAAITGAWVAAHDAVSALLEGGKIA ASPITAPLAAVSVGIVQGTPLLDLEYTEDVQCDTDMNVVMMDGGRFVEVQGTAEGIAFTRSEMDRLLDLAARGVDALIAL QRQALSAPASGL
Specific function: Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates [H]
COG id: COG0689
COG function: function code J; RNase PH
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the RNase PH family [H]
Homologues:
Organism=Escherichia coli, GI157672248, Length=209, Percent_Identity=67.4641148325359, Blast_Score=286, Evalue=9e-79,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001247 - InterPro: IPR015847 - InterPro: IPR020568 - InterPro: IPR002381 - InterPro: IPR018336 [H]
Pfam domain/function: PF01138 RNase_PH; PF03725 RNase_PH_C [H]
EC number: =2.7.7.56 [H]
Molecular weight: Translated: 26998; Mature: 26867
Theoretical pI: Translated: 6.40; Mature: 6.40
Prosite motif: PS01277 RIBONUCLEASE_PH
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPSSSLSHPFERSAGRGVDALRPVRITRHYTMHAEGSVLVEFGHTKVLCTASVEERVPPH CCCCCCCCCHHHHCCCCCCCCCCEEEEEEEEEECCCCEEEEECCEEEEEECCHHHCCCCC KRGSGEGWVTAEYGMLPRATHTRSDREAARGKQSGRTQEIQRLIGRSLRAVFDLRALGER CCCCCCCEEEEECCCCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCE TIQLDCDVLQADGGTRTAAITGAWVAAHDAVSALLEGGKIAASPITAPLAAVSVGIVQGT EEEEEEEEEECCCCCEEEEEEEHHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHEECCC PLLDLEYTEDVQCDTDMNVVMMDGGRFVEVQGTAEGIAFTRSEMDRLLDLAARGVDALIA CEEEECCCCCCCCCCCCCEEEECCCEEEEEECCCCCCEECHHHHHHHHHHHHHHHHHHHH LQRQALSAPASGL HHHHHHCCCCCCC >Mature Secondary Structure PSSSLSHPFERSAGRGVDALRPVRITRHYTMHAEGSVLVEFGHTKVLCTASVEERVPPH CCCCCCCCHHHHCCCCCCCCCCEEEEEEEEEECCCCEEEEECCEEEEEECCHHHCCCCC KRGSGEGWVTAEYGMLPRATHTRSDREAARGKQSGRTQEIQRLIGRSLRAVFDLRALGER CCCCCCCEEEEECCCCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCE TIQLDCDVLQADGGTRTAAITGAWVAAHDAVSALLEGGKIAASPITAPLAAVSVGIVQGT EEEEEEEEEECCCCCEEEEEEEHHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHEECCC PLLDLEYTEDVQCDTDMNVVMMDGGRFVEVQGTAEGIAFTRSEMDRLLDLAARGVDALIA CEEEECCCCCCCCCCCCCEEEECCCEEEEEECCCCCCEECHHHHHHHHHHHHHHHHHHHH LQRQALSAPASGL HHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA