Definition Acidovorax citrulli AAC00-1 chromosome, complete genome.
Accession NC_008752
Length 5,352,772

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The map label for this gene is ctaD [H]

Identifier: 120612204

GI number: 120612204

Start: 3930298

End: 3932007

Strand: Reverse

Name: ctaD [H]

Synonym: Aave_3557

Alternate gene names: 120612204

Gene position: 3932007-3930298 (Counterclockwise)

Preceding gene: 120612205

Following gene: 120612203

Centisome position: 73.46

GC content: 65.91

Gene sequence:

>1710_bases
ATGACGCATTCCGCCGTGCCTCCTTCCGGCACCGTGCAGGCGCCGGGCCCTGCTGCTGCCGCAGCGGTGGCCGGGGCCGC
CGCTATCCCGGCCAGCGGGCACGGCGACGGACACCACGGCACCCATTCCGAAGCGCACGGCCCCGTGCCGACGGGCTGGC
GCCGCTGGCTGAACGCCACCAGCCACAAGGACATCGGCACGCTGTACCTGCTGTTCAGCTTCGCGATGTTCATGGTCGGG
GGCGTGTTCGCCATGCTGATCCGGCTCGAACTGCTGCAGCCGGGCCTGCAGATTCTCAACCCGGAGACCTACAACCAGCT
GGTCACCATGCACGGCCTGGTCATGGTGTTCGGCGCGATCATGCCGGCGTTCGTGGGCTTCGCGAACTGGATGATCCCGC
TGCAGATCGGCGCGTCCGACATGGCCTTCGCGCGCATGAACAATTTCAGCTTCTGGCTGCTGTTCTTCGCGGGGCTGCTG
CTGCTCGGCTCGTTCTTCACCACGGGCGGTGCCGTGGCCGCCGGCTGGACCCTCTACGCGCCGCTCACCCTGCAGATGGG
GCCGGGCATGGACATGGCGATCTTCGCGATCCACCTCATGGGCGCGAGCTCCATCATGGGCGCGATCAACATCATCGTGA
CCATCCTCAACATGCGTGCGCCGGGCATGACGCTCATGAAGATGCCGCTGTTCTGCTGGTCCTGGCTGATCACCGCCTAC
CTGCTCATCGCGGTGATGCCCGTGCTCGCGGGCGCCATCACCATGACGCTCACCGACCGGCACTTCGGCACCACCTTCTT
CAACGCATCGGGCGGCGGCGACCCGGTGCTCTACCAGCACATCTTCTGGTTCTTCGGGCATCCGGAGGTGTACATCATGA
TCCTGCCGGCCTTCGGCATCGTGAGCCACGTCATCCCCACCTTCGCGCGCAAGAAGCTCTTCGGCTACAGCTCCATGGTG
TATGCGCTCGCGGCCATCGCCATCCTGTCGTTCATCGTCTGGGCGCACCACATGTTCGCCACCGGCATGCCCGTGACCGG
CCAGCTGTTCTTCATGTACGCCACCATGCTCGTGGCCGTGCCCACCGCCGTGAAGGTCTTCAACTGGACCGCCACCATGT
GGCGCGGCTCCATGACCTTCGAGACCCCGATGCTGTTCGCGGTGGGCTTCATCTTCGTCTTCAGCATCGGCGGCCTGAGC
GGCGTCATGCTCTCCATCGCGCCGCTCGACCTGCAATACCACGACACCTATTTCGTGGTGGCGCACTTCCACTACGTACT
GGTCGCCGGGTCGCTCTTCGCGATGTTCGCGGGCTACTACTACTGGGTGCCCAAATGGACGGGCGTGATGTACTCCGAGC
GGCGCGGCCAGTGGCATTTCTGGACGTCGATCGTCTCGCTGAACGTCACTTTCTTCCCCATGCATTTCCTGGGACTGGCC
GGCATGCCGCGGCGGTACGTGGACTACGCGGCGCAGTTCACCGATTTCCACGCACTGACCAGCGTCGCGGCCATCGTTTT
CGGCTTCTCCCAGGTGTACTTCCTCTTCGCCGTGCTGCTGCCGGCGCTGCGCCACCGCGGCGCGCCGGCCGGCGCACGGC
CGTGGGAAGGGGCAGAGGGGCTGGAGTGGGAAGTGCCGTCACCGGCGCCGATGCACACCTTCGTCACGCCGCCGCGGCTG
GATGCCAGCGCCACGCGGGTGGTGGCGTGA

Upstream 100 bases:

>100_bases
CTGGAGATGGCGCAGCAGCTGGCCCAGGAAGTGGGCGTGAGCGCGGACAAGGCCGCGGCCAGCGGCAAGTGATCCGGCAG
GCACGATCGGACCCCGCACC

Downstream 100 bases:

>100_bases
TGGCCGAGGCGGAGGTGAGGGCCCGGCCTGCCGGCGCCGCACCCCTGCCGGTCCGGCACTGGAGGCTCGCCCGCAGTCCT
TCGCTCACACCCGCGCAATA

Product: cytochrome-c oxidase

Products: NA

Alternate protein names: Cytochrome aa3 subunit 1; Cytochrome c oxidase polypeptide I [H]

Number of amino acids: Translated: 569; Mature: 568

Protein sequence:

>569_residues
MTHSAVPPSGTVQAPGPAAAAAVAGAAAIPASGHGDGHHGTHSEAHGPVPTGWRRWLNATSHKDIGTLYLLFSFAMFMVG
GVFAMLIRLELLQPGLQILNPETYNQLVTMHGLVMVFGAIMPAFVGFANWMIPLQIGASDMAFARMNNFSFWLLFFAGLL
LLGSFFTTGGAVAAGWTLYAPLTLQMGPGMDMAIFAIHLMGASSIMGAINIIVTILNMRAPGMTLMKMPLFCWSWLITAY
LLIAVMPVLAGAITMTLTDRHFGTTFFNASGGGDPVLYQHIFWFFGHPEVYIMILPAFGIVSHVIPTFARKKLFGYSSMV
YALAAIAILSFIVWAHHMFATGMPVTGQLFFMYATMLVAVPTAVKVFNWTATMWRGSMTFETPMLFAVGFIFVFSIGGLS
GVMLSIAPLDLQYHDTYFVVAHFHYVLVAGSLFAMFAGYYYWVPKWTGVMYSERRGQWHFWTSIVSLNVTFFPMHFLGLA
GMPRRYVDYAAQFTDFHALTSVAAIVFGFSQVYFLFAVLLPALRHRGAPAGARPWEGAEGLEWEVPSPAPMHTFVTPPRL
DASATRVVA

Sequences:

>Translated_569_residues
MTHSAVPPSGTVQAPGPAAAAAVAGAAAIPASGHGDGHHGTHSEAHGPVPTGWRRWLNATSHKDIGTLYLLFSFAMFMVG
GVFAMLIRLELLQPGLQILNPETYNQLVTMHGLVMVFGAIMPAFVGFANWMIPLQIGASDMAFARMNNFSFWLLFFAGLL
LLGSFFTTGGAVAAGWTLYAPLTLQMGPGMDMAIFAIHLMGASSIMGAINIIVTILNMRAPGMTLMKMPLFCWSWLITAY
LLIAVMPVLAGAITMTLTDRHFGTTFFNASGGGDPVLYQHIFWFFGHPEVYIMILPAFGIVSHVIPTFARKKLFGYSSMV
YALAAIAILSFIVWAHHMFATGMPVTGQLFFMYATMLVAVPTAVKVFNWTATMWRGSMTFETPMLFAVGFIFVFSIGGLS
GVMLSIAPLDLQYHDTYFVVAHFHYVLVAGSLFAMFAGYYYWVPKWTGVMYSERRGQWHFWTSIVSLNVTFFPMHFLGLA
GMPRRYVDYAAQFTDFHALTSVAAIVFGFSQVYFLFAVLLPALRHRGAPAGARPWEGAEGLEWEVPSPAPMHTFVTPPRL
DASATRVVA
>Mature_568_residues
THSAVPPSGTVQAPGPAAAAAVAGAAAIPASGHGDGHHGTHSEAHGPVPTGWRRWLNATSHKDIGTLYLLFSFAMFMVGG
VFAMLIRLELLQPGLQILNPETYNQLVTMHGLVMVFGAIMPAFVGFANWMIPLQIGASDMAFARMNNFSFWLLFFAGLLL
LGSFFTTGGAVAAGWTLYAPLTLQMGPGMDMAIFAIHLMGASSIMGAINIIVTILNMRAPGMTLMKMPLFCWSWLITAYL
LIAVMPVLAGAITMTLTDRHFGTTFFNASGGGDPVLYQHIFWFFGHPEVYIMILPAFGIVSHVIPTFARKKLFGYSSMVY
ALAAIAILSFIVWAHHMFATGMPVTGQLFFMYATMLVAVPTAVKVFNWTATMWRGSMTFETPMLFAVGFIFVFSIGGLSG
VMLSIAPLDLQYHDTYFVVAHFHYVLVAGSLFAMFAGYYYWVPKWTGVMYSERRGQWHFWTSIVSLNVTFFPMHFLGLAG
MPRRYVDYAAQFTDFHALTSVAAIVFGFSQVYFLFAVLLPALRHRGAPAGARPWEGAEGLEWEVPSPAPMHTFVTPPRLD
ASATRVVA

Specific function: Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome

COG id: COG0843

COG function: function code C; Heme/copper-type cytochrome/quinol oxidases, subunit 1

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the heme-copper respiratory oxidase family [H]

Homologues:

Organism=Homo sapiens, GI251831109, Length=514, Percent_Identity=48.8326848249027, Blast_Score=451, Evalue=1e-127,
Organism=Escherichia coli, GI1786634, Length=521, Percent_Identity=39.1554702495201, Blast_Score=364, Evalue=1e-102,
Organism=Saccharomyces cerevisiae, GI6226519, Length=529, Percent_Identity=46.3137996219282, Blast_Score=470, Evalue=1e-133,
Organism=Saccharomyces cerevisiae, GI6226524, Length=322, Percent_Identity=50.6211180124224, Blast_Score=321, Evalue=2e-88,
Organism=Saccharomyces cerevisiae, GI6226523, Length=247, Percent_Identity=47.7732793522267, Blast_Score=206, Evalue=6e-54,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000883
- InterPro:   IPR014241 [H]

Pfam domain/function: PF00115 COX1 [H]

EC number: =1.9.3.1 [H]

Molecular weight: Translated: 62314; Mature: 62183

Theoretical pI: Translated: 8.76; Mature: 8.76

Prosite motif: PS50855 COX1 ; PS00077 COX1_CUB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
6.3 %Met     (Translated Protein)
6.5 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
6.2 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTHSAVPPSGTVQAPGPAAAAAVAGAAAIPASGHGDGHHGTHSEAHGPVPTGWRRWLNAT
CCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCC
SHKDIGTLYLLFSFAMFMVGGVFAMLIRLELLQPGLQILNPETYNQLVTMHGLVMVFGAI
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHHHHH
MPAFVGFANWMIPLQIGASDMAFARMNNFSFWLLFFAGLLLLGSFFTTGGAVAAGWTLYA
HHHHHHHHHCEEEEEECCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHCCEEEEE
PLTLQMGPGMDMAIFAIHLMGASSIMGAINIIVTILNMRAPGMTLMKMPLFCWSWLITAY
EEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
LLIAVMPVLAGAITMTLTDRHFGTTFFNASGGGDPVLYQHIFWFFGHPEVYIMILPAFGI
HHHHHHHHHHHHHEEEEECCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEEEECHHHH
VSHVIPTFARKKLFGYSSMVYALAAIAILSFIVWAHHMFATGMPVTGQLFFMYATMLVAV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
PTAVKVFNWTATMWRGSMTFETPMLFAVGFIFVFSIGGLSGVMLSIAPLDLQYHDTYFVV
HHHHHHHCCHHHHHCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHEEEECCEEECCCEEHH
AHFHYVLVAGSLFAMFAGYYYWVPKWTGVMYSERRGQWHFWTSIVSLNVTFFPMHFLGLA
HHHHHHHHHHHHHHHHHHHEEECCCCCCCHHHCCCCCEEEEEHHHHHHHHHHHHHHHHCC
GMPRRYVDYAAQFTDFHALTSVAAIVFGFSQVYFLFAVLLPALRHRGAPAGARPWEGAEG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
LEWEVPSPAPMHTFVTPPRLDASATRVVA
CCEECCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
THSAVPPSGTVQAPGPAAAAAVAGAAAIPASGHGDGHHGTHSEAHGPVPTGWRRWLNAT
CCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCC
SHKDIGTLYLLFSFAMFMVGGVFAMLIRLELLQPGLQILNPETYNQLVTMHGLVMVFGAI
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHHHHH
MPAFVGFANWMIPLQIGASDMAFARMNNFSFWLLFFAGLLLLGSFFTTGGAVAAGWTLYA
HHHHHHHHHCEEEEEECCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHCCEEEEE
PLTLQMGPGMDMAIFAIHLMGASSIMGAINIIVTILNMRAPGMTLMKMPLFCWSWLITAY
EEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
LLIAVMPVLAGAITMTLTDRHFGTTFFNASGGGDPVLYQHIFWFFGHPEVYIMILPAFGI
HHHHHHHHHHHHHEEEEECCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEEEECHHHH
VSHVIPTFARKKLFGYSSMVYALAAIAILSFIVWAHHMFATGMPVTGQLFFMYATMLVAV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
PTAVKVFNWTATMWRGSMTFETPMLFAVGFIFVFSIGGLSGVMLSIAPLDLQYHDTYFVV
HHHHHHHCCHHHHHCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHEEEECCEEECCCEEHH
AHFHYVLVAGSLFAMFAGYYYWVPKWTGVMYSERRGQWHFWTSIVSLNVTFFPMHFLGLA
HHHHHHHHHHHHHHHHHHHEEECCCCCCCHHHCCCCCEEEEEHHHHHHHHHHHHHHHHCC
GMPRRYVDYAAQFTDFHALTSVAAIVFGFSQVYFLFAVLLPALRHRGAPAGARPWEGAEG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
LEWEVPSPAPMHTFVTPPRLDASATRVVA
CCEECCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8117073 [H]