Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
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Accession | NC_008752 |
Length | 5,352,772 |
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The map label for this gene is ctaD [H]
Identifier: 120612204
GI number: 120612204
Start: 3930298
End: 3932007
Strand: Reverse
Name: ctaD [H]
Synonym: Aave_3557
Alternate gene names: 120612204
Gene position: 3932007-3930298 (Counterclockwise)
Preceding gene: 120612205
Following gene: 120612203
Centisome position: 73.46
GC content: 65.91
Gene sequence:
>1710_bases ATGACGCATTCCGCCGTGCCTCCTTCCGGCACCGTGCAGGCGCCGGGCCCTGCTGCTGCCGCAGCGGTGGCCGGGGCCGC CGCTATCCCGGCCAGCGGGCACGGCGACGGACACCACGGCACCCATTCCGAAGCGCACGGCCCCGTGCCGACGGGCTGGC GCCGCTGGCTGAACGCCACCAGCCACAAGGACATCGGCACGCTGTACCTGCTGTTCAGCTTCGCGATGTTCATGGTCGGG GGCGTGTTCGCCATGCTGATCCGGCTCGAACTGCTGCAGCCGGGCCTGCAGATTCTCAACCCGGAGACCTACAACCAGCT GGTCACCATGCACGGCCTGGTCATGGTGTTCGGCGCGATCATGCCGGCGTTCGTGGGCTTCGCGAACTGGATGATCCCGC TGCAGATCGGCGCGTCCGACATGGCCTTCGCGCGCATGAACAATTTCAGCTTCTGGCTGCTGTTCTTCGCGGGGCTGCTG CTGCTCGGCTCGTTCTTCACCACGGGCGGTGCCGTGGCCGCCGGCTGGACCCTCTACGCGCCGCTCACCCTGCAGATGGG GCCGGGCATGGACATGGCGATCTTCGCGATCCACCTCATGGGCGCGAGCTCCATCATGGGCGCGATCAACATCATCGTGA CCATCCTCAACATGCGTGCGCCGGGCATGACGCTCATGAAGATGCCGCTGTTCTGCTGGTCCTGGCTGATCACCGCCTAC CTGCTCATCGCGGTGATGCCCGTGCTCGCGGGCGCCATCACCATGACGCTCACCGACCGGCACTTCGGCACCACCTTCTT CAACGCATCGGGCGGCGGCGACCCGGTGCTCTACCAGCACATCTTCTGGTTCTTCGGGCATCCGGAGGTGTACATCATGA TCCTGCCGGCCTTCGGCATCGTGAGCCACGTCATCCCCACCTTCGCGCGCAAGAAGCTCTTCGGCTACAGCTCCATGGTG TATGCGCTCGCGGCCATCGCCATCCTGTCGTTCATCGTCTGGGCGCACCACATGTTCGCCACCGGCATGCCCGTGACCGG CCAGCTGTTCTTCATGTACGCCACCATGCTCGTGGCCGTGCCCACCGCCGTGAAGGTCTTCAACTGGACCGCCACCATGT GGCGCGGCTCCATGACCTTCGAGACCCCGATGCTGTTCGCGGTGGGCTTCATCTTCGTCTTCAGCATCGGCGGCCTGAGC GGCGTCATGCTCTCCATCGCGCCGCTCGACCTGCAATACCACGACACCTATTTCGTGGTGGCGCACTTCCACTACGTACT GGTCGCCGGGTCGCTCTTCGCGATGTTCGCGGGCTACTACTACTGGGTGCCCAAATGGACGGGCGTGATGTACTCCGAGC GGCGCGGCCAGTGGCATTTCTGGACGTCGATCGTCTCGCTGAACGTCACTTTCTTCCCCATGCATTTCCTGGGACTGGCC GGCATGCCGCGGCGGTACGTGGACTACGCGGCGCAGTTCACCGATTTCCACGCACTGACCAGCGTCGCGGCCATCGTTTT CGGCTTCTCCCAGGTGTACTTCCTCTTCGCCGTGCTGCTGCCGGCGCTGCGCCACCGCGGCGCGCCGGCCGGCGCACGGC CGTGGGAAGGGGCAGAGGGGCTGGAGTGGGAAGTGCCGTCACCGGCGCCGATGCACACCTTCGTCACGCCGCCGCGGCTG GATGCCAGCGCCACGCGGGTGGTGGCGTGA
Upstream 100 bases:
>100_bases CTGGAGATGGCGCAGCAGCTGGCCCAGGAAGTGGGCGTGAGCGCGGACAAGGCCGCGGCCAGCGGCAAGTGATCCGGCAG GCACGATCGGACCCCGCACC
Downstream 100 bases:
>100_bases TGGCCGAGGCGGAGGTGAGGGCCCGGCCTGCCGGCGCCGCACCCCTGCCGGTCCGGCACTGGAGGCTCGCCCGCAGTCCT TCGCTCACACCCGCGCAATA
Product: cytochrome-c oxidase
Products: NA
Alternate protein names: Cytochrome aa3 subunit 1; Cytochrome c oxidase polypeptide I [H]
Number of amino acids: Translated: 569; Mature: 568
Protein sequence:
>569_residues MTHSAVPPSGTVQAPGPAAAAAVAGAAAIPASGHGDGHHGTHSEAHGPVPTGWRRWLNATSHKDIGTLYLLFSFAMFMVG GVFAMLIRLELLQPGLQILNPETYNQLVTMHGLVMVFGAIMPAFVGFANWMIPLQIGASDMAFARMNNFSFWLLFFAGLL LLGSFFTTGGAVAAGWTLYAPLTLQMGPGMDMAIFAIHLMGASSIMGAINIIVTILNMRAPGMTLMKMPLFCWSWLITAY LLIAVMPVLAGAITMTLTDRHFGTTFFNASGGGDPVLYQHIFWFFGHPEVYIMILPAFGIVSHVIPTFARKKLFGYSSMV YALAAIAILSFIVWAHHMFATGMPVTGQLFFMYATMLVAVPTAVKVFNWTATMWRGSMTFETPMLFAVGFIFVFSIGGLS GVMLSIAPLDLQYHDTYFVVAHFHYVLVAGSLFAMFAGYYYWVPKWTGVMYSERRGQWHFWTSIVSLNVTFFPMHFLGLA GMPRRYVDYAAQFTDFHALTSVAAIVFGFSQVYFLFAVLLPALRHRGAPAGARPWEGAEGLEWEVPSPAPMHTFVTPPRL DASATRVVA
Sequences:
>Translated_569_residues MTHSAVPPSGTVQAPGPAAAAAVAGAAAIPASGHGDGHHGTHSEAHGPVPTGWRRWLNATSHKDIGTLYLLFSFAMFMVG GVFAMLIRLELLQPGLQILNPETYNQLVTMHGLVMVFGAIMPAFVGFANWMIPLQIGASDMAFARMNNFSFWLLFFAGLL LLGSFFTTGGAVAAGWTLYAPLTLQMGPGMDMAIFAIHLMGASSIMGAINIIVTILNMRAPGMTLMKMPLFCWSWLITAY LLIAVMPVLAGAITMTLTDRHFGTTFFNASGGGDPVLYQHIFWFFGHPEVYIMILPAFGIVSHVIPTFARKKLFGYSSMV YALAAIAILSFIVWAHHMFATGMPVTGQLFFMYATMLVAVPTAVKVFNWTATMWRGSMTFETPMLFAVGFIFVFSIGGLS GVMLSIAPLDLQYHDTYFVVAHFHYVLVAGSLFAMFAGYYYWVPKWTGVMYSERRGQWHFWTSIVSLNVTFFPMHFLGLA GMPRRYVDYAAQFTDFHALTSVAAIVFGFSQVYFLFAVLLPALRHRGAPAGARPWEGAEGLEWEVPSPAPMHTFVTPPRL DASATRVVA >Mature_568_residues THSAVPPSGTVQAPGPAAAAAVAGAAAIPASGHGDGHHGTHSEAHGPVPTGWRRWLNATSHKDIGTLYLLFSFAMFMVGG VFAMLIRLELLQPGLQILNPETYNQLVTMHGLVMVFGAIMPAFVGFANWMIPLQIGASDMAFARMNNFSFWLLFFAGLLL LGSFFTTGGAVAAGWTLYAPLTLQMGPGMDMAIFAIHLMGASSIMGAINIIVTILNMRAPGMTLMKMPLFCWSWLITAYL LIAVMPVLAGAITMTLTDRHFGTTFFNASGGGDPVLYQHIFWFFGHPEVYIMILPAFGIVSHVIPTFARKKLFGYSSMVY ALAAIAILSFIVWAHHMFATGMPVTGQLFFMYATMLVAVPTAVKVFNWTATMWRGSMTFETPMLFAVGFIFVFSIGGLSG VMLSIAPLDLQYHDTYFVVAHFHYVLVAGSLFAMFAGYYYWVPKWTGVMYSERRGQWHFWTSIVSLNVTFFPMHFLGLAG MPRRYVDYAAQFTDFHALTSVAAIVFGFSQVYFLFAVLLPALRHRGAPAGARPWEGAEGLEWEVPSPAPMHTFVTPPRLD ASATRVVA
Specific function: Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome
COG id: COG0843
COG function: function code C; Heme/copper-type cytochrome/quinol oxidases, subunit 1
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the heme-copper respiratory oxidase family [H]
Homologues:
Organism=Homo sapiens, GI251831109, Length=514, Percent_Identity=48.8326848249027, Blast_Score=451, Evalue=1e-127, Organism=Escherichia coli, GI1786634, Length=521, Percent_Identity=39.1554702495201, Blast_Score=364, Evalue=1e-102, Organism=Saccharomyces cerevisiae, GI6226519, Length=529, Percent_Identity=46.3137996219282, Blast_Score=470, Evalue=1e-133, Organism=Saccharomyces cerevisiae, GI6226524, Length=322, Percent_Identity=50.6211180124224, Blast_Score=321, Evalue=2e-88, Organism=Saccharomyces cerevisiae, GI6226523, Length=247, Percent_Identity=47.7732793522267, Blast_Score=206, Evalue=6e-54,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000883 - InterPro: IPR014241 [H]
Pfam domain/function: PF00115 COX1 [H]
EC number: =1.9.3.1 [H]
Molecular weight: Translated: 62314; Mature: 62183
Theoretical pI: Translated: 8.76; Mature: 8.76
Prosite motif: PS50855 COX1 ; PS00077 COX1_CUB
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 6.3 %Met (Translated Protein) 6.5 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 6.2 %Met (Mature Protein) 6.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTHSAVPPSGTVQAPGPAAAAAVAGAAAIPASGHGDGHHGTHSEAHGPVPTGWRRWLNAT CCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCC SHKDIGTLYLLFSFAMFMVGGVFAMLIRLELLQPGLQILNPETYNQLVTMHGLVMVFGAI CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHHHHH MPAFVGFANWMIPLQIGASDMAFARMNNFSFWLLFFAGLLLLGSFFTTGGAVAAGWTLYA HHHHHHHHHCEEEEEECCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHCCEEEEE PLTLQMGPGMDMAIFAIHLMGASSIMGAINIIVTILNMRAPGMTLMKMPLFCWSWLITAY EEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH LLIAVMPVLAGAITMTLTDRHFGTTFFNASGGGDPVLYQHIFWFFGHPEVYIMILPAFGI HHHHHHHHHHHHHEEEEECCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEEEECHHHH VSHVIPTFARKKLFGYSSMVYALAAIAILSFIVWAHHMFATGMPVTGQLFFMYATMLVAV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH PTAVKVFNWTATMWRGSMTFETPMLFAVGFIFVFSIGGLSGVMLSIAPLDLQYHDTYFVV HHHHHHHCCHHHHHCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHEEEECCEEECCCEEHH AHFHYVLVAGSLFAMFAGYYYWVPKWTGVMYSERRGQWHFWTSIVSLNVTFFPMHFLGLA HHHHHHHHHHHHHHHHHHHEEECCCCCCCHHHCCCCCEEEEEHHHHHHHHHHHHHHHHCC GMPRRYVDYAAQFTDFHALTSVAAIVFGFSQVYFLFAVLLPALRHRGAPAGARPWEGAEG CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC LEWEVPSPAPMHTFVTPPRLDASATRVVA CCEECCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure THSAVPPSGTVQAPGPAAAAAVAGAAAIPASGHGDGHHGTHSEAHGPVPTGWRRWLNAT CCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCC SHKDIGTLYLLFSFAMFMVGGVFAMLIRLELLQPGLQILNPETYNQLVTMHGLVMVFGAI CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHHHHH MPAFVGFANWMIPLQIGASDMAFARMNNFSFWLLFFAGLLLLGSFFTTGGAVAAGWTLYA HHHHHHHHHCEEEEEECCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHCCEEEEE PLTLQMGPGMDMAIFAIHLMGASSIMGAINIIVTILNMRAPGMTLMKMPLFCWSWLITAY EEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH LLIAVMPVLAGAITMTLTDRHFGTTFFNASGGGDPVLYQHIFWFFGHPEVYIMILPAFGI HHHHHHHHHHHHHEEEEECCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEEEECHHHH VSHVIPTFARKKLFGYSSMVYALAAIAILSFIVWAHHMFATGMPVTGQLFFMYATMLVAV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH PTAVKVFNWTATMWRGSMTFETPMLFAVGFIFVFSIGGLSGVMLSIAPLDLQYHDTYFVV HHHHHHHCCHHHHHCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHEEEECCEEECCCEEHH AHFHYVLVAGSLFAMFAGYYYWVPKWTGVMYSERRGQWHFWTSIVSLNVTFFPMHFLGLA HHHHHHHHHHHHHHHHHHHEEECCCCCCCHHHCCCCCEEEEEHHHHHHHHHHHHHHHHCC GMPRRYVDYAAQFTDFHALTSVAAIVFGFSQVYFLFAVLLPALRHRGAPAGARPWEGAEG CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC LEWEVPSPAPMHTFVTPPRLDASATRVVA CCEECCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8117073 [H]