Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
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Accession | NC_008752 |
Length | 5,352,772 |
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The map label for this gene is ppdD [C]
Identifier: 120612196
GI number: 120612196
Start: 3920510
End: 3921115
Strand: Reverse
Name: ppdD [C]
Synonym: Aave_3549
Alternate gene names: 120612196
Gene position: 3921115-3920510 (Counterclockwise)
Preceding gene: 120612197
Following gene: 120612191
Centisome position: 73.25
GC content: 63.04
Gene sequence:
>606_bases ATGAGGAATAATCTGCACTGCGGATCGCAGGCCAGCCAGGGCCCCAGGATTGCCAGGCGGCACCGGGGGTTCACCCTGAT CGAGCTCATGGTGACGATGGCGCTGGTGGCCGTGCTGCTGCGCATCGGCATCCCGAGCTTCGTGAGCTTCCAGCGCAATT CCGAACTGACCTCCGCCGCCAACGGGCTGCTTGCGAGCGTCAATTCGGCCCGCACGGAGGCCATGAAGCGCAACATGAAC GCGGGGTTGGTTCCCACCACGGGCAGTTCATGGGGAGGAGGGTGGACCGCATTCGTGGATATCGATGGCAATGGTTCCTT CGACGCGGCCAAGGACCTGGTGGTGTCAACGCAACCGGCGCTGGCGTCTTATTTTTCCGTGACCGGTACAGGCACCGCGA CAGGCGATACCCCCTCCATCACCTTCAACTCTTCAGGTTATGTGAAGGATTTCGGCAACGTCACCCTGGAAATCGCGCGC AACGATCTTTCCGATGCGGCGCTGCTGGAGCAGACGCGACGGGTTGTCATCTTCAAGACGGGCCGCGTGCGCGTCTGCAA GCCGACGTCCGCGACCGATGCCGCGTGCTCCAGCGGCGGGAGCTGA
Upstream 100 bases:
>100_bases TCAAGTCGGACCCTGCCGTGGGTGATCTCTCTCTCACCAGTACGGGGGTCAAGTCGTGTACGGGCACGGCCAGCAGCACC AATCCCAAGCTGTGCTGGCC
Downstream 100 bases:
>100_bases CGATCCGCCGTCCGGCTTCTGGCGGCGGGTCTCCTCCCGCTACACCCCCCCGATCTCCCGCCAGATCGCCGACAGCGGCA GGACCTTGTCCACGCCCCCC
Product: Tfp pilus assembly protein FimT
Products: NA
Alternate protein names: Tfp Pilus Assembly Protein FimT; Methylation
Number of amino acids: Translated: 201; Mature: 201
Protein sequence:
>201_residues MRNNLHCGSQASQGPRIARRHRGFTLIELMVTMALVAVLLRIGIPSFVSFQRNSELTSAANGLLASVNSARTEAMKRNMN AGLVPTTGSSWGGGWTAFVDIDGNGSFDAAKDLVVSTQPALASYFSVTGTGTATGDTPSITFNSSGYVKDFGNVTLEIAR NDLSDAALLEQTRRVVIFKTGRVRVCKPTSATDAACSSGGS
Sequences:
>Translated_201_residues MRNNLHCGSQASQGPRIARRHRGFTLIELMVTMALVAVLLRIGIPSFVSFQRNSELTSAANGLLASVNSARTEAMKRNMN AGLVPTTGSSWGGGWTAFVDIDGNGSFDAAKDLVVSTQPALASYFSVTGTGTATGDTPSITFNSSGYVKDFGNVTLEIAR NDLSDAALLEQTRRVVIFKTGRVRVCKPTSATDAACSSGGS >Mature_201_residues MRNNLHCGSQASQGPRIARRHRGFTLIELMVTMALVAVLLRIGIPSFVSFQRNSELTSAANGLLASVNSARTEAMKRNMN AGLVPTTGSSWGGGWTAFVDIDGNGSFDAAKDLVVSTQPALASYFSVTGTGTATGDTPSITFNSSGYVKDFGNVTLEIAR NDLSDAALLEQTRRVVIFKTGRVRVCKPTSATDAACSSGGS
Specific function: Not Yet Known. [C]
COG id: COG4970
COG function: function code NU; Tfp pilus assembly protein FimT
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21112; Mature: 21112
Theoretical pI: Translated: 9.82; Mature: 9.82
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRNNLHCGSQASQGPRIARRHRGFTLIELMVTMALVAVLLRIGIPSFVSFQRNSELTSAA CCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCHHHHH NGLLASVNSARTEAMKRNMNAGLVPTTGSSWGGGWTAFVDIDGNGSFDAAKDLVVSTQPA HHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCEEEEEEECCCCCCHHHHHEEECCCHH LASYFSVTGTGTATGDTPSITFNSSGYVKDFGNVTLEIARNDLSDAALLEQTRRVVIFKT HHHHEEECCCCCCCCCCCEEEECCCCCEECCCCEEEEEECCCCCHHHHHHHCCEEEEEEC GRVRVCKPTSATDAACSSGGS CCEEEECCCCCCCHHHCCCCC >Mature Secondary Structure MRNNLHCGSQASQGPRIARRHRGFTLIELMVTMALVAVLLRIGIPSFVSFQRNSELTSAA CCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCHHHHH NGLLASVNSARTEAMKRNMNAGLVPTTGSSWGGGWTAFVDIDGNGSFDAAKDLVVSTQPA HHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCEEEEEEECCCCCCHHHHHEEECCCHH LASYFSVTGTGTATGDTPSITFNSSGYVKDFGNVTLEIARNDLSDAALLEQTRRVVIFKT HHHHEEECCCCCCCCCCCEEEECCCCCEECCCCEEEEEECCCCCHHHHHHHCCEEEEEEC GRVRVCKPTSATDAACSSGGS CCEEEECCCCCCCHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA