Click here to switch to the map view.

The map label for this gene is pdhR [C]

Identifier: 120612166

GI number: 120612166

Start: 3886776

End: 3887456

Strand: Direct

Name: pdhR [C]

Synonym: Aave_3515

Alternate gene names: 120612166

Gene position: 3886776-3887456 (Clockwise)

Preceding gene: 120612160

Following gene: 120612167

Centisome position: 72.61

GC content: 69.31

Gene sequence:

>681_bases
ATGAGTGAATCCCCCGTACAGAACCTGACGGACCGCGTCAGCGACCAGATCCGCCGCCGCATCGTGGCCGGCGAGCTGGC
CCCGGGCCAGCGCCTGTCCGAGGCCGCGCTGGCCGAGAGCCTGGAGATTTCGCGCAACACCCTGCGCGAGGTGTTCCGGC
TGCTCACCAAGGAGGGCCTGCTCCGGCACGAACCCAACCGCGGCGTGTCGGTGGCGGTGCCCAGCATCGCGTCCATCATC
GACATCTACCGCGTGCGCCGGCTCATCGAATGCCAGGCGCTGGCCCAGGCCTATCCGCGCCACCCCGCCAAGAAGCACCT
GCGCGAGGCGGTGGACAACGCCCTGCGCTGCCGCGACGCGGGCGACTGGCAGGGCGCGGGCACGGCGAACATGGAGTTCC
ACATGGCCGTGGTGGAACTGGCCGACAGCGAACGCCTGAACGTGATGTTCTCCCATCTGCTGGCCGAGCTGCGCCTGGCC
TTCGGGCTGCTCAAGGACGCGGAATTCCTGCACGCGCCCTACGTGGAGATGAACGTGAAGATCGTCGAGCTGTTCGAGGC
CGGCAGGCTGCAGGAGGCCTCGGCCGCCCTGCACGACTACCTGGTGCATTCGGAACGCATCGTGCTGGCCGTGTACGCGC
GGCGGATCTCCGAGCCGGGGCTGGAGCGCGGCACCCGCTGA

Upstream 100 bases:

>100_bases
CCCCGCCGGAGGCCCGCCGCCCGATACACTGGCGCTCCGGACGTCCGCCCCGCTCGACCAGCCGCGGCGCCCCGCCTCCC
CTTTCGCCTGCCCGCCGCCG

Downstream 100 bases:

>100_bases
ACCGCGTGCCGGCAGCCCCCTCCACGGGACGGCCCGGGGTCCGCGCGGGCCGTTGGCGCGCTACACTGCATGCGGCCGGG
CATCCGCCCTGCTCCCAGCC

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator GntR Family; GntR-Family Transcriptional Regulator; Transcriptional Regulator; Transcriptional Regulator Protein; GntR Domain Protein; GntR Family Regulatory Protein; Transcriptional Regulator GntR Family Protein; GntR Domain-Containing Protein; Transcriptional Regulator GntR; GntR Family Regulatory; HTH-Type Transcriptional Regulator YdhC; Transcriptional Regulator Protein GntR Family; Transcriptional Regulator Gntr Family; GntR Family Transcription Regulator; Transcription Regulator Protein; Transcription Regulator; Regulatory Protein GntR HTHGntR; Transcriptional Regulator GNTR Family

Number of amino acids: Translated: 226; Mature: 225

Protein sequence:

>226_residues
MSESPVQNLTDRVSDQIRRRIVAGELAPGQRLSEAALAESLEISRNTLREVFRLLTKEGLLRHEPNRGVSVAVPSIASII
DIYRVRRLIECQALAQAYPRHPAKKHLREAVDNALRCRDAGDWQGAGTANMEFHMAVVELADSERLNVMFSHLLAELRLA
FGLLKDAEFLHAPYVEMNVKIVELFEAGRLQEASAALHDYLVHSERIVLAVYARRISEPGLERGTR

Sequences:

>Translated_226_residues
MSESPVQNLTDRVSDQIRRRIVAGELAPGQRLSEAALAESLEISRNTLREVFRLLTKEGLLRHEPNRGVSVAVPSIASII
DIYRVRRLIECQALAQAYPRHPAKKHLREAVDNALRCRDAGDWQGAGTANMEFHMAVVELADSERLNVMFSHLLAELRLA
FGLLKDAEFLHAPYVEMNVKIVELFEAGRLQEASAALHDYLVHSERIVLAVYARRISEPGLERGTR
>Mature_225_residues
SESPVQNLTDRVSDQIRRRIVAGELAPGQRLSEAALAESLEISRNTLREVFRLLTKEGLLRHEPNRGVSVAVPSIASIID
IYRVRRLIECQALAQAYPRHPAKKHLREAVDNALRCRDAGDWQGAGTANMEFHMAVVELADSERLNVMFSHLLAELRLAF
GLLKDAEFLHAPYVEMNVKIVELFEAGRLQEASAALHDYLVHSERIVLAVYARRISEPGLERGTR

Specific function: Transcriptional Repressor For The Pyruvate Dehydrogenase Complex Genes ACEef And Lpd. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25411; Mature: 25279

Theoretical pI: Translated: 7.28; Mature: 7.28

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSESPVQNLTDRVSDQIRRRIVAGELAPGQRLSEAALAESLEISRNTLREVFRLLTKEGL
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LRHEPNRGVSVAVPSIASIIDIYRVRRLIECQALAQAYPRHPAKKHLREAVDNALRCRDA
HHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCC
GDWQGAGTANMEFHMAVVELADSERLNVMFSHLLAELRLAFGLLKDAEFLHAPYVEMNVK
CCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
IVELFEAGRLQEASAALHDYLVHSERIVLAVYARRISEPGLERGTR
HHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
SESPVQNLTDRVSDQIRRRIVAGELAPGQRLSEAALAESLEISRNTLREVFRLLTKEGL
CCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LRHEPNRGVSVAVPSIASIIDIYRVRRLIECQALAQAYPRHPAKKHLREAVDNALRCRDA
HHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCC
GDWQGAGTANMEFHMAVVELADSERLNVMFSHLLAELRLAFGLLKDAEFLHAPYVEMNVK
CCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
IVELFEAGRLQEASAALHDYLVHSERIVLAVYARRISEPGLERGTR
HHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA