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The map label for this gene is ybgL [C]

Identifier: 120612164

GI number: 120612164

Start: 3884414

End: 3885169

Strand: Reverse

Name: ybgL [C]

Synonym: Aave_3513

Alternate gene names: 120612164

Gene position: 3885169-3884414 (Counterclockwise)

Preceding gene: 120612165

Following gene: 120612163

Centisome position: 72.58

GC content: 74.34

Gene sequence:

>756_bases
ATGCATATCGACCTGAACAGCGACCTGGGCGAAAGCCTGGGCGCCTGGCGCATGGGCGACGACGCCGCCATGCTCGGCAT
CGTCACCAGCGCCAACGTGGCCTGCGGCTTCCATGCCGGCGACGCGGCGGGCATCCTGGCCACGCTGCGCGGCGCGAAGG
AGCGCGGCGTGGCGGTGGGCGCCCACGTCGCCTATCGCGACCTGGCCGGCTTCGGCCGCCGCAACATGGACGTGGCGAGC
GCCGATCTCGTCGCCGACGTCATCTACCAGATCGGCGCGCTGCAGGGCCTGGCCACGGCCGCCGGCACGCGCGTGACCTA
CGTGAAGCCGCACGGCGCGCTCTACAACACCATCGCGCGCGACGCGCGCCAGGCCCGCGACGTGATCGCCGCCATCCGCG
CCATCGATGCTTCGCTGGCGCTGGTGGTGCTGGCGGGCTCCCCGCTGGAGCGCTGGGCGGCGGACGCCGGCCTGCGCGTG
GTGGCCGAGGCCTTCGCCGACCGCGCCTATACGCCGCAGGGCACACTGGTGTCGCGGCGCGAACCCGGTGCCGTGCTGCA
CGATGCCGGCGAGGTCGCGCGGCGCATGCTGCAGCTCGTGCGCGAAGGCACCGTGCGGGCCATCGACGGCAGCACCACCC
GCGTGCGCGCCGATTCCATCTGCGTGCACGGCGACAGCCCCGGCGCCGTGGACATGGCCCGCGCCGTGCGCGGGGCGCTG
GAGCGCGAGGGCATCGCCCTGCGCCCCTTTGCATGA

Upstream 100 bases:

>100_bases
AGGGGCGCGAGCTCTCCGCCAGCACCGACGCGGCGGCCTGAGCGGCGCTGTCTCCGGCTTCCTGCCGGCGCTCCATTCCT
CGACGTTCTTTTCCTCTCGT

Downstream 100 bases:

>100_bases
CGGGCTTGGCCGAAGAAAGGAGCCGCCGATGAATTCCCCTCTCGAAGCCGCCCGTGCCGCCGCCATCCACGCCGCGCGCG
CAGCCCGCGCCCGCTACCGC

Product: LamB/YcsF family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 251; Mature: 251

Protein sequence:

>251_residues
MHIDLNSDLGESLGAWRMGDDAAMLGIVTSANVACGFHAGDAAGILATLRGAKERGVAVGAHVAYRDLAGFGRRNMDVAS
ADLVADVIYQIGALQGLATAAGTRVTYVKPHGALYNTIARDARQARDVIAAIRAIDASLALVVLAGSPLERWAADAGLRV
VAEAFADRAYTPQGTLVSRREPGAVLHDAGEVARRMLQLVREGTVRAIDGSTTRVRADSICVHGDSPGAVDMARAVRGAL
EREGIALRPFA

Sequences:

>Translated_251_residues
MHIDLNSDLGESLGAWRMGDDAAMLGIVTSANVACGFHAGDAAGILATLRGAKERGVAVGAHVAYRDLAGFGRRNMDVAS
ADLVADVIYQIGALQGLATAAGTRVTYVKPHGALYNTIARDARQARDVIAAIRAIDASLALVVLAGSPLERWAADAGLRV
VAEAFADRAYTPQGTLVSRREPGAVLHDAGEVARRMLQLVREGTVRAIDGSTTRVRADSICVHGDSPGAVDMARAVRGAL
EREGIALRPFA
>Mature_251_residues
MHIDLNSDLGESLGAWRMGDDAAMLGIVTSANVACGFHAGDAAGILATLRGAKERGVAVGAHVAYRDLAGFGRRNMDVAS
ADLVADVIYQIGALQGLATAAGTRVTYVKPHGALYNTIARDARQARDVIAAIRAIDASLALVVLAGSPLERWAADAGLRV
VAEAFADRAYTPQGTLVSRREPGAVLHDAGEVARRMLQLVREGTVRAIDGSTTRVRADSICVHGDSPGAVDMARAVRGAL
EREGIALRPFA

Specific function: Unknown

COG id: COG1540

COG function: function code R; Uncharacterized proteins, homologs of lactam utilization protein B

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0271 (lamB) family

Homologues:

Organism=Escherichia coli, GI1786931, Length=245, Percent_Identity=42.8571428571429, Blast_Score=188, Evalue=3e-49,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y3513_ACIAC (A1TSY0)

Other databases:

- EMBL:   CP000512
- RefSeq:   YP_971842.1
- ProteinModelPortal:   A1TSY0
- SMR:   A1TSY0
- STRING:   A1TSY0
- GeneID:   4665693
- GenomeReviews:   CP000512_GR
- KEGG:   aav:Aave_3513
- eggNOG:   COG1540
- HOGENOM:   HBG482818
- OMA:   GRRSMAC
- PhylomeDB:   A1TSY0
- ProtClustDB:   PRK05406
- BioCyc:   AAVE397945:AAVE_3513-MONOMER
- HAMAP:   MF_00691
- InterPro:   IPR011330
- InterPro:   IPR005501

Pfam domain/function: PF03746 LamB_YcsF; SSF88713 Glyco_hydro/deAcase_b/a-brl

EC number: NA

Molecular weight: Translated: 26190; Mature: 26190

Theoretical pI: Translated: 7.67; Mature: 7.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHIDLNSDLGESLGAWRMGDDAAMLGIVTSANVACGFHAGDAAGILATLRGAKERGVAVG
CEECCCCCHHHHCCCCCCCCCCEEEEEEEECCEEEEECCCCHHHHHHHHHCHHHCCEEEE
AHVAYRDLAGFGRRNMDVASADLVADVIYQIGALQGLATAAGTRVTYVKPHGALYNTIAR
HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHH
DARQARDVIAAIRAIDASLALVVLAGSPLERWAADAGLRVVAEAFADRAYTPQGTLVSRR
HHHHHHHHHHHHHHHHHHEEEEEEECCCHHHHHHHCHHHHHHHHHHCCCCCCCCCEECCC
EPGAVLHDAGEVARRMLQLVREGTVRAIDGSTTRVRADSICVHGDSPGAVDMARAVRGAL
CCCCHHHHHHHHHHHHHHHHHCCCEEEECCCCEEEEECEEEEECCCCCHHHHHHHHHHHH
EREGIALRPFA
HHCCEEECCCC
>Mature Secondary Structure
MHIDLNSDLGESLGAWRMGDDAAMLGIVTSANVACGFHAGDAAGILATLRGAKERGVAVG
CEECCCCCHHHHCCCCCCCCCCEEEEEEEECCEEEEECCCCHHHHHHHHHCHHHCCEEEE
AHVAYRDLAGFGRRNMDVASADLVADVIYQIGALQGLATAAGTRVTYVKPHGALYNTIAR
HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHH
DARQARDVIAAIRAIDASLALVVLAGSPLERWAADAGLRVVAEAFADRAYTPQGTLVSRR
HHHHHHHHHHHHHHHHHHEEEEEEECCCHHHHHHHCHHHHHHHHHHCCCCCCCCCEECCC
EPGAVLHDAGEVARRMLQLVREGTVRAIDGSTTRVRADSICVHGDSPGAVDMARAVRGAL
CCCCHHHHHHHHHHHHHHHHHCCCEEEECCCCEEEEECEEEEECCCCCHHHHHHHHHHHH
EREGIALRPFA
HHCCEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA