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The map label for this gene is ybgK [H]

Identifier: 120612162

GI number: 120612162

Start: 3881945

End: 3883564

Strand: Reverse

Name: ybgK [H]

Synonym: Aave_3511

Alternate gene names: 120612162

Gene position: 3883564-3881945 (Counterclockwise)

Preceding gene: 120612163

Following gene: 120612161

Centisome position: 72.55

GC content: 75.93

Gene sequence:

>1620_bases
TTGCGCTTCCTTCCCGTCAACCTCGATGCCCTGCTGGTCGAGCTGGACGACCTGCAGCAGACCCTGGCGCTGCATGCCTC
GCTGCGGCGCGACCCCATCGCCGGCATCGAAGAACTGGTGCCGGCCGCGCGCACCGTGCTGGTCCGCTACCGGCCTGCGG
CGCAGGGCTTCGCCGCCCTGGTCGATGCGATCGCCCGGCGCGACGTGCGCGGCGAGGCGCAGCGCAGCGACACGCTGGTG
GAGATTCCCGTGCGCTACGACGGCGAGGACCTGGCCGAGGTGGCGCAGAGGCTGGGCATCACCCCCGACGAGGTGGTGCG
CCGCCACACCGGCAGCGAATACACCGTGGCCTTCACGGGCTTCGCGCCCGGCTTCGGCTACCTGGCCGGCGGCGATCCGG
GCCTGGACGTGCCGCGGCGCGCCACGCCGCGCACCCGCATCCCGGCCGGCGCCGTGGGCCTGGCCGGCACCTTCAGCGGC
GTCTATCCGCAGGCCAGCCCGGGCGGCTGGCAGATCATCGGCACCACGCCCGTGGCGATGTGGGACATCGACCGCGATCC
GCCCGCGCTCCTGCAGCCCGGCGCGCGCGTGCGCTTCGTGGACATCGCCACGCTGCCGGCATCGGCGCGGGAGGCCCTGG
AGGCGGTGAAGCCTGCGGCGCCCTCCGCGTCCGGATCCGCATCCGCCACGCCGGACACCGGCGCGCAAGGGCCCGCACTG
CGCGTGCTGTCCGCGGGCCTGCAGACACTCTTCCAGGACCTGGGCCGCCATGGCCATGCGGGGCAGGGGGTCTCGGCCTC
CGGCGCCATGGACCGGGCCGCCTGCCGCGCCGCCAACCGGCTGGCGGGCAATCCCTCCGATACCGCCTGCCTGGAGACCG
TGCAGGGCGGCCTGCGCCTGCGCAGCCAGGGCGAGAACGTCGTGGCCGTGGCCGGCGCGGATGCGCCCCTGTGGTGCACG
GCCGCGGACGGACGGCGCTGGCCGTTGCCGCGCTACGCGCCCGTGGCGCTGGCGGACGGCGACGAACTCGCCATCGGCGA
GCCGCATGCCGGCGCACGCTGCTACGTGGCGGTGCGCGGCGGCTTCCGCGTGATGCCGGTGCTGGGCAGCTGCGCCACCG
ACACCCTGGCCCGCGTGGGGCCCCCGGCCGTTGCCGCGGGCGACGTGCTGCCCGTGCGCGTGCCGCAGGGGTTGCCGGCC
GTCGGGGCGGCAGAGTTGCCCCCGGACGGCCTGCCCCGGGCCGGCGGCGAAGTGGTGCTCGATTGCGTGCCGGGGCCGCG
CACCGACTGGTTCACGCCCGAGGCCCTGGCGCTGCTGGCCTCCCAACGCTGGCAGGTCACGCCGCAATCCAACCGCGTGG
GCCTGCGCCTGGCGGGCGATACGGCGCTGGCCCGCGCCGTGCAGGGCGAACTACCCAGCGAGGGCGCTGTGGCCGGCGCC
ATCCAGGTGCCGCCCAGCGGCCAGCCCGTGCTGTTCCTGGCCGACCATCCCCTCACCGGCGGCTATCCCGTCATCGGCGC
CGTGGCGCCCCACCACCTGGACCTGGCGGGCCAGATCCCGGTGAACGCATGGGTGCGCTTCCGTCCCATCCGGGCGTTCG
AGCCGGTCACGCGCCCGTGA

Upstream 100 bases:

>100_bases
TCATGGCCTCGGGCGTGCCCTTCGCCGTCACCCATGCGCCGGGCCACATGTTCATCACCGACGTGCCCGACAGCACCTAC
CACGTCTGACGGAGTTTCGA

Downstream 100 bases:

>100_bases
ACACCATGAAAAAAGTCTTGATGGCTTGCAGCGAAAGTTGATCCGATGAAGAAAGTCCTGATCGCCAACCGCGGCGAGAT
CGCCGTCCGCATCGCCCGCG

Product: allophanate hydrolase subunit 2

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 539; Mature: 539

Protein sequence:

>539_residues
MRFLPVNLDALLVELDDLQQTLALHASLRRDPIAGIEELVPAARTVLVRYRPAAQGFAALVDAIARRDVRGEAQRSDTLV
EIPVRYDGEDLAEVAQRLGITPDEVVRRHTGSEYTVAFTGFAPGFGYLAGGDPGLDVPRRATPRTRIPAGAVGLAGTFSG
VYPQASPGGWQIIGTTPVAMWDIDRDPPALLQPGARVRFVDIATLPASAREALEAVKPAAPSASGSASATPDTGAQGPAL
RVLSAGLQTLFQDLGRHGHAGQGVSASGAMDRAACRAANRLAGNPSDTACLETVQGGLRLRSQGENVVAVAGADAPLWCT
AADGRRWPLPRYAPVALADGDELAIGEPHAGARCYVAVRGGFRVMPVLGSCATDTLARVGPPAVAAGDVLPVRVPQGLPA
VGAAELPPDGLPRAGGEVVLDCVPGPRTDWFTPEALALLASQRWQVTPQSNRVGLRLAGDTALARAVQGELPSEGAVAGA
IQVPPSGQPVLFLADHPLTGGYPVIGAVAPHHLDLAGQIPVNAWVRFRPIRAFEPVTRP

Sequences:

>Translated_539_residues
MRFLPVNLDALLVELDDLQQTLALHASLRRDPIAGIEELVPAARTVLVRYRPAAQGFAALVDAIARRDVRGEAQRSDTLV
EIPVRYDGEDLAEVAQRLGITPDEVVRRHTGSEYTVAFTGFAPGFGYLAGGDPGLDVPRRATPRTRIPAGAVGLAGTFSG
VYPQASPGGWQIIGTTPVAMWDIDRDPPALLQPGARVRFVDIATLPASAREALEAVKPAAPSASGSASATPDTGAQGPAL
RVLSAGLQTLFQDLGRHGHAGQGVSASGAMDRAACRAANRLAGNPSDTACLETVQGGLRLRSQGENVVAVAGADAPLWCT
AADGRRWPLPRYAPVALADGDELAIGEPHAGARCYVAVRGGFRVMPVLGSCATDTLARVGPPAVAAGDVLPVRVPQGLPA
VGAAELPPDGLPRAGGEVVLDCVPGPRTDWFTPEALALLASQRWQVTPQSNRVGLRLAGDTALARAVQGELPSEGAVAGA
IQVPPSGQPVLFLADHPLTGGYPVIGAVAPHHLDLAGQIPVNAWVRFRPIRAFEPVTRP
>Mature_539_residues
MRFLPVNLDALLVELDDLQQTLALHASLRRDPIAGIEELVPAARTVLVRYRPAAQGFAALVDAIARRDVRGEAQRSDTLV
EIPVRYDGEDLAEVAQRLGITPDEVVRRHTGSEYTVAFTGFAPGFGYLAGGDPGLDVPRRATPRTRIPAGAVGLAGTFSG
VYPQASPGGWQIIGTTPVAMWDIDRDPPALLQPGARVRFVDIATLPASAREALEAVKPAAPSASGSASATPDTGAQGPAL
RVLSAGLQTLFQDLGRHGHAGQGVSASGAMDRAACRAANRLAGNPSDTACLETVQGGLRLRSQGENVVAVAGADAPLWCT
AADGRRWPLPRYAPVALADGDELAIGEPHAGARCYVAVRGGFRVMPVLGSCATDTLARVGPPAVAAGDVLPVRVPQGLPA
VGAAELPPDGLPRAGGEVVLDCVPGPRTDWFTPEALALLASQRWQVTPQSNRVGLRLAGDTALARAVQGELPSEGAVAGA
IQVPPSGQPVLFLADHPLTGGYPVIGAVAPHHLDLAGQIPVNAWVRFRPIRAFEPVTRP

Specific function: Unknown

COG id: COG1984

COG function: function code E; Allophanate hydrolase subunit 2

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis ycsJ and yeast urea amidolyase (DUR1,2) [H]

Homologues:

Organism=Escherichia coli, GI1786930, Length=300, Percent_Identity=33.6666666666667, Blast_Score=139, Evalue=4e-34,
Organism=Escherichia coli, GI1786929, Length=170, Percent_Identity=41.7647058823529, Blast_Score=124, Evalue=2e-29,
Organism=Saccharomyces cerevisiae, GI6319685, Length=314, Percent_Identity=31.8471337579618, Blast_Score=110, Evalue=8e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003778 [H]

Pfam domain/function: PF02626 AHS2 [H]

EC number: NA

Molecular weight: Translated: 56012; Mature: 56012

Theoretical pI: Translated: 6.32; Mature: 6.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFLPVNLDALLVELDDLQQTLALHASLRRDPIAGIEELVPAARTVLVRYRPAAQGFAAL
CEEEECCHHHEEEEHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHEEEEEECCHHHHHHHH
VDAIARRDVRGEAQRSDTLVEIPVRYDGEDLAEVAQRLGITPDEVVRRHTGSEYTVAFTG
HHHHHHHCCCCCHHCCCCEEEEEEEECCHHHHHHHHHHCCCHHHHHHHCCCCEEEEEEEC
FAPGFGYLAGGDPGLDVPRRATPRTRIPAGAVGLAGTFSGVYPQASPGGWQIIGTTPVAM
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCEEE
WDIDRDPPALLQPGARVRFVDIATLPASAREALEAVKPAAPSASGSASATPDTGAQGPAL
EECCCCCHHHHCCCCEEEEEEEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHH
RVLSAGLQTLFQDLGRHGHAGQGVSASGAMDRAACRAANRLAGNPSDTACLETVQGGLRL
HHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEE
RSQGENVVAVAGADAPLWCTAADGRRWPLPRYAPVALADGDELAIGEPHAGARCYVAVRG
ECCCCCEEEEECCCCCEEEEECCCCCCCCCCCCEEEEECCCEEECCCCCCCCEEEEEECC
GFRVMPVLGSCATDTLARVGPPAVAAGDVLPVRVPQGLPAVGAAELPPDGLPRAGGEVVL
CEEEEEECCCHHHHHHHHCCCCCEECCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEE
DCVPGPRTDWFTPEALALLASQRWQVTPQSNRVGLRLAGDTALARAVQGELPSEGAVAGA
ECCCCCCCCCCCHHHHHHHHHCCEEECCCCCCEEEEEECCHHHHHHHHCCCCCCCCEEEE
IQVPPSGQPVLFLADHPLTGGYPVIGAVAPHHLDLAGQIPVNAWVRFRPIRAFEPVTRP
EECCCCCCCEEEEECCCCCCCCCEEECCCCCCCCCCCCCCCCEEEEEEECHHCCCCCCC
>Mature Secondary Structure
MRFLPVNLDALLVELDDLQQTLALHASLRRDPIAGIEELVPAARTVLVRYRPAAQGFAAL
CEEEECCHHHEEEEHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHEEEEEECCHHHHHHHH
VDAIARRDVRGEAQRSDTLVEIPVRYDGEDLAEVAQRLGITPDEVVRRHTGSEYTVAFTG
HHHHHHHCCCCCHHCCCCEEEEEEEECCHHHHHHHHHHCCCHHHHHHHCCCCEEEEEEEC
FAPGFGYLAGGDPGLDVPRRATPRTRIPAGAVGLAGTFSGVYPQASPGGWQIIGTTPVAM
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCEEE
WDIDRDPPALLQPGARVRFVDIATLPASAREALEAVKPAAPSASGSASATPDTGAQGPAL
EECCCCCHHHHCCCCEEEEEEEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHH
RVLSAGLQTLFQDLGRHGHAGQGVSASGAMDRAACRAANRLAGNPSDTACLETVQGGLRL
HHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEE
RSQGENVVAVAGADAPLWCTAADGRRWPLPRYAPVALADGDELAIGEPHAGARCYVAVRG
ECCCCCEEEEECCCCCEEEEECCCCCCCCCCCCEEEEECCCEEECCCCCCCCEEEEEECC
GFRVMPVLGSCATDTLARVGPPAVAAGDVLPVRVPQGLPAVGAAELPPDGLPRAGGEVVL
CEEEEEECCCHHHHHHHHCCCCCEECCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEE
DCVPGPRTDWFTPEALALLASQRWQVTPQSNRVGLRLAGDTALARAVQGELPSEGAVAGA
ECCCCCCCCCCCHHHHHHHHHCCEEECCCCCCEEEEEECCHHHHHHHHCCCCCCCCEEEE
IQVPPSGQPVLFLADHPLTGGYPVIGAVAPHHLDLAGQIPVNAWVRFRPIRAFEPVTRP
EECCCCCCCEEEEECCCCCCCCCEEECCCCCCCCCCCCCCCCEEEEEEECHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]