Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
---|---|
Accession | NC_008752 |
Length | 5,352,772 |
Click here to switch to the map view.
The map label for this gene is hopD2 [H]
Identifier: 120612153
GI number: 120612153
Start: 3872251
End: 3873195
Strand: Direct
Name: hopD2 [H]
Synonym: Aave_3502
Alternate gene names: 120612153
Gene position: 3872251-3873195 (Clockwise)
Preceding gene: 120612152
Following gene: 120612159
Centisome position: 72.34
GC content: 67.72
Gene sequence:
>945_bases ATGCCGCACGTTTCATTGGCATGCCGGCATCACGCCGGCACACGGCCGGACCGATCCGCGGGACGGACCGCACTGCAACT GCGCCAGCCCGAGGCCGAAACCCGCCTGGAACTCGTCTATGACACCGAGCCGCCGCATCCGGCAGGGACCATGGCGTTCT TCCGGCATTCGACCCAGGCATCGGAACTGCCTCCCGGCATCGACACCCGGGGCCTGGAATCACTGCAGCTCTCGGGAAGC GAGCGCATCACCTCGGTCGAGCAGGTGCGAGCCATCCGCCAGGCCTGCGGCGATGCCCCCCTGGTCGTGGTGGACCTGCG CCAGGAATCGCACGCGGTGGCCGATGGCCATTCCCTGACATGGCGTGGCCCGATGGACTGGGGTAACGTGGGGCTGGGCA CGGCAGCGGCCACGGCCCGGGAGGCAGAACAGCTCGAAGAACTGCGCCGGCAGGGCAACGCAGTGGCGACGCATGCCGAT CATGTAAAAGGCAAGAGCGACGAGCCGGCCCTCCGGCGCCTGGACACGACCCTTGCCCGTTCGGAGCAGGAGATCGTGGA AGCCGCGGGCGCCGACTATCGCCGTATCGCCGTCACGGACCATCTGCGCCCGTCCCGCGGGGAGGTGGACCAGTTCATCG ACCTGGTACGCGGCCTGCCCGATGGCGCGGGCCTGCATGTGCACTGCAACGGCGGCCGCGGAAGGACCACCACCTTCATG GTGCTATACGACATGCCGCGCAATGCGCGGGAGGCCGGTGCGGACGCCATCATGGCCCGGCAGTCCAGACTGGGCATGGA CTACAACCGCTGCGCATACCGCCCCCCTGACGCCTGCGGTTTTCAGGTGAAGTTCAGCGAACGCACGCTGGCAGTGGTGC GTACGTCGTGGCGCAGCCCCATCAACCCATTGATTCCGCGCGTGTCTCCCATCGACTGCTCATAG
Upstream 100 bases:
>100_bases GGATGGATCAAGTCCTGCCTGCCTTCGAAGGGACGGGACATCCCCACGGACGAAGAACGCAGCCCCTCTCCTGCCGCCCG GTCCGACAGCAGAAGCCTCG
Downstream 100 bases:
>100_bases GCAGTGACGACGAAACGCCCCTCCTGGTACTCCTGCGCCTCGTGGATGGCCGCGATCTCGCGCCGGGCCAACTCGGCCCC GCGCTTGTCGCCCAGGGCCT
Product: dual specificity protein phosphatase
Products: NA
Alternate protein names: Tyrosine-protein phosphatase hopPtoD2 [H]
Number of amino acids: Translated: 314; Mature: 313
Protein sequence:
>314_residues MPHVSLACRHHAGTRPDRSAGRTALQLRQPEAETRLELVYDTEPPHPAGTMAFFRHSTQASELPPGIDTRGLESLQLSGS ERITSVEQVRAIRQACGDAPLVVVDLRQESHAVADGHSLTWRGPMDWGNVGLGTAAATAREAEQLEELRRQGNAVATHAD HVKGKSDEPALRRLDTTLARSEQEIVEAAGADYRRIAVTDHLRPSRGEVDQFIDLVRGLPDGAGLHVHCNGGRGRTTTFM VLYDMPRNAREAGADAIMARQSRLGMDYNRCAYRPPDACGFQVKFSERTLAVVRTSWRSPINPLIPRVSPIDCS
Sequences:
>Translated_314_residues MPHVSLACRHHAGTRPDRSAGRTALQLRQPEAETRLELVYDTEPPHPAGTMAFFRHSTQASELPPGIDTRGLESLQLSGS ERITSVEQVRAIRQACGDAPLVVVDLRQESHAVADGHSLTWRGPMDWGNVGLGTAAATAREAEQLEELRRQGNAVATHAD HVKGKSDEPALRRLDTTLARSEQEIVEAAGADYRRIAVTDHLRPSRGEVDQFIDLVRGLPDGAGLHVHCNGGRGRTTTFM VLYDMPRNAREAGADAIMARQSRLGMDYNRCAYRPPDACGFQVKFSERTLAVVRTSWRSPINPLIPRVSPIDCS >Mature_313_residues PHVSLACRHHAGTRPDRSAGRTALQLRQPEAETRLELVYDTEPPHPAGTMAFFRHSTQASELPPGIDTRGLESLQLSGSE RITSVEQVRAIRQACGDAPLVVVDLRQESHAVADGHSLTWRGPMDWGNVGLGTAAATAREAEQLEELRRQGNAVATHADH VKGKSDEPALRRLDTTLARSEQEIVEAAGADYRRIAVTDHLRPSRGEVDQFIDLVRGLPDGAGLHVHCNGGRGRTTTFMV LYDMPRNAREAGADAIMARQSRLGMDYNRCAYRPPDACGFQVKFSERTLAVVRTSWRSPINPLIPRVSPIDCS
Specific function: Effector showing tyrosine-phosphatase activity required for host defense suppression. Functions inside plant cells causing suppression of HR (hypersensitive response), PR1 gene expression and oxidative burst probably by interfering with a MAPK (mitogen- a
COG id: NA
COG function: NA
Gene ontology:
Cell location: Secreted. Note=Secreted via type III secretion system (TTSS) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 tyrosine-protein phosphatase domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000387 - InterPro: IPR016130 - InterPro: IPR000242 [H]
Pfam domain/function: PF00102 Y_phosphatase [H]
EC number: =3.1.3.48 [H]
Molecular weight: Translated: 34460; Mature: 34329
Theoretical pI: Translated: 7.36; Mature: 7.36
Prosite motif: PS00383 TYR_PHOSPHATASE_1 ; PS50056 TYR_PHOSPHATASE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPHVSLACRHHAGTRPDRSAGRTALQLRQPEAETRLELVYDTEPPHPAGTMAFFRHSTQA CCCCCEEECCCCCCCCCCHHCCEEEEECCCCCCCEEEEEECCCCCCCCCHHHHHHCCCCH SELPPGIDTRGLESLQLSGSERITSVEQVRAIRQACGDAPLVVVDLRQESHAVADGHSLT HCCCCCCCCCCCCCEECCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCEEE WRGPMDWGNVGLGTAAATAREAEQLEELRRQGNAVATHADHVKGKSDEPALRRLDTTLAR EECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEECHHHCCCCCCCHHHHHHHHHHHH SEQEIVEAAGADYRRIAVTDHLRPSRGEVDQFIDLVRGLPDGAGLHVHCNGGRGRTTTFM HHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCEEEEECCCCCCEEEEE VLYDMPRNAREAGADAIMARQSRLGMDYNRCAYRPPDACGFQVKFSERTLAVVRTSWRSP EEECCCCCHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCEEEEECCCEEEEHHHHHCCC INPLIPRVSPIDCS CHHHCCCCCCCCCC >Mature Secondary Structure PHVSLACRHHAGTRPDRSAGRTALQLRQPEAETRLELVYDTEPPHPAGTMAFFRHSTQA CCCCEEECCCCCCCCCCHHCCEEEEECCCCCCCEEEEEECCCCCCCCCHHHHHHCCCCH SELPPGIDTRGLESLQLSGSERITSVEQVRAIRQACGDAPLVVVDLRQESHAVADGHSLT HCCCCCCCCCCCCCEECCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCEEE WRGPMDWGNVGLGTAAATAREAEQLEELRRQGNAVATHADHVKGKSDEPALRRLDTTLAR EECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEECHHHCCCCCCCHHHHHHHHHHHH SEQEIVEAAGADYRRIAVTDHLRPSRGEVDQFIDLVRGLPDGAGLHVHCNGGRGRTTTFM HHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCEEEEECCCCCCEEEEE VLYDMPRNAREAGADAIMARQSRLGMDYNRCAYRPPDACGFQVKFSERTLAVVRTSWRSP EEECCCCCHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCEEEEECCCEEEEHHHHHCCC INPLIPRVSPIDCS CHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12437299; 12828636; 12928499 [H]