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The map label for this gene is yhgF [H]

Identifier: 120612074

GI number: 120612074

Start: 3777282

End: 3779648

Strand: Reverse

Name: yhgF [H]

Synonym: Aave_3421

Alternate gene names: 120612074

Gene position: 3779648-3777282 (Counterclockwise)

Preceding gene: 120612078

Following gene: 120612073

Centisome position: 70.61

GC content: 69.54

Gene sequence:

>2367_bases
ATGCAGCAGATCATCCGGCAACTGGCCACGGAAATCAGGGTGGGGGAACAGCAGGTCCGTGCGGCCGTGGATCTGCTGGA
CGGCGGGGCCACGGTGCCCTTCATCGCGCGCTACCGCAAGGAGGCCACGGGCGGCCTGGACGACGTTCAACTGCGCGAAC
TGGAGGCGCGGCTCGCCTACCTGCGCGAGCTGGAGGACCGCCGCGCCGCGGTGCTCAAGGCCATCGACGAGCAGGGCAAG
CTGACCGATGCGCTGCGGGCCGCCATCGCCGCCGCGCCCACCAAGCAGGAGCTGGAAGACATCTACCTTCCCTACAAGCA
GAAGCGCCGGACCAAGGGGCAGATCGCGAAGGAGTTCGGCATCGAGCCGCTGGCCGACCGCCTGTTCGCGGACCCGACGC
TCGACCCGGCCGTGGAGGCGCAGGCCTTCCTGCGCCCGCCCGAAGTGCTGGACGACGGCAAGCCGGGCGCCGATTTCTCC
ACCGTGGGTGCGGTGCTGGACGGCGTGCGCGACATCCTTTCCGAGCGCTGGGCCGAAGATGCCGCCCTGGTGCAATCGAT
GCGGGAATGGCTCTGGACCGAAGGCCTGCTGCGCAGCAAGAAAGTGGAGTCGAAGAACGAGGCCGACCCGGAGGTGGCGA
AGTTCCGCGACTATTTCGACTACGACGAACCCATCGGCCGCGTGCCGTCGCACCGCGCGCTGGCCGTGTTCCGCGGGCGG
GCGCTGGAGATCCTGGAGGCCAAGCTCGTGCTGCCCGTGGAACCCGAGCCCGGCAAGCCGAGCATTGCCGAGGGCCGCAT
CGCGCTGCACCTGGGCTGGAGCCACGCGGGCCGGCCGGCCGACGACCTGATCCGCAAGTGCGTGGCCTGGACCTGGCGCG
TGAAGCTCAGCCTGTCCACGGAGCGCGACCTGTTCTCACGCCTGCGCGAGGAGGCCGAGAAGGTGGCGATCAAGGTCTTC
TCTGACAACCTGCGCGACCTGCTGCTGGCCGCGCCCGCGGGCCCGCGGGCGGTGATGGGCCTGGACCCGGGCATCCGCAC
CGGCGTGAAGGTGGCGGTGGTGGATGCCACCGGCAAGCTGGTGGAGACGGCCACGGTCTATCCGCACGAGCCACGCCGCG
ACTGGGAGGGCTCTCTGCACACGCTGGCGCGCCTCGTGCAGAAACACGGCGTGCAACTGGTGGCCATCGGCAACGGCACC
GCGAGCCGCGAGACCGACAAGCTGGCGGCGGACCTGCTCAAGCTGGTGGCCAAGGCCGACCTCGGTTTCGAGAAGGTGGT
GGTGAGCGAGGCGGGTGCCTCCGTCTATTCCGCCAGCGAGTACGCCAGCCAGGAAATGCCGGACGTGGACGTGAGCCTGC
GCGGCGCGGCGAGCATCGCCCGCCGGCTGCAGGACCCGCTGGCCGAGCTGGTGAAAATCGACCCGAAGAGCATCGGCGTG
GGCCAGTACCAGCACGACGTGAACCAGAGCGAACTGGCGCGCACGCTGGACGCGGTCGTCGAGGATTGCGTGAACTCCGT
GGGTGTGGACCTGAACACCGCGAGCGCGCCGCTGCTCTCGCGCGTATCGGGCCTGTCGGGCAGCGTGGCCAAGGCCGTGG
TGCGCTGGCGCGAGGCCAACGGCGCCTTCCGCAGCCGGCGCCAGCTCATGGAAGTGGCGGGCCTGGGCGCGAAGACGTTC
GAGCAGTCTGCCGGCTTTTTGCGCATCCGCGGCGGCGACAACCCGCTGGACATGACGGGCGTCCACCCGGAGACCTATCC
GGTGGTGGAGCGCATCCTCGCGCACACGGCCAAGCCGGTGAACGAAATCATGGGCCGCGCCGACATGCTCAAGCAGCTCA
AGCCCGAGCTGTTCGCCAACGAGAAGTTCGGCGTGATCACGGTCCGGGACATCCTCGCCGAACTCGAAAAGCCCGGCCGC
GACCCGCGCCCGGACTTCAAGGTGGCGCGCTTCAACGACGGCGTGGAGGACATCGCCGACCTGAAGGAGGGCATGGTGCT
CGAGGGCACCGTGAGCAACGTCGCGCAGTTCGGCGCTTTCGTGGACCTGGGCGTGCACCAGGACGGCCTGGTCCACGTGA
GCCAGCTCAGCCACAAGTTCGTGCAGGACGCGCGCGAGATCGTGAAGACCGGCGACATCGTGAAGGTGAAGGTGCTCGAG
GTGGACCCGGTGCGCAAGCGCATCAGCCTGACCATGAAGCTCGATGCCGCACCGGCGCGCCGCGACCAGGATGGCCGCGG
CCCGCGCGAGAACCGCTTCGAGGGCGCCGGCCGCGGCTATGCCCAGCCCGCGCGCCGCGCGGCCGACCCGGCTCCCCAGT
CGGCCATGGCGTCGGCCTTCGCGAAGCTGCAGAGTCACAAACGGTAA

Upstream 100 bases:

>100_bases
TGTTGTGCACTTCGGGTGCGAGGAGGCGACCCGGCGTGCTCCTCCGGCCGCTATGGCACACTCGCCCGCTTCGAGTTTTC
ATCGTTCGTTCGCAAGGGAT

Downstream 100 bases:

>100_bases
GAAACGTTTTCAGGCGTGGATAATGGGGCGACCGCCCCGCACCCACGCCATGGAACTCAACGCCCTGCTGGAAATCCCCG
TGGCGCTGCCGAGCCATCCG

Product: RNA-binding S1 domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 788; Mature: 788

Protein sequence:

>788_residues
MQQIIRQLATEIRVGEQQVRAAVDLLDGGATVPFIARYRKEATGGLDDVQLRELEARLAYLRELEDRRAAVLKAIDEQGK
LTDALRAAIAAAPTKQELEDIYLPYKQKRRTKGQIAKEFGIEPLADRLFADPTLDPAVEAQAFLRPPEVLDDGKPGADFS
TVGAVLDGVRDILSERWAEDAALVQSMREWLWTEGLLRSKKVESKNEADPEVAKFRDYFDYDEPIGRVPSHRALAVFRGR
ALEILEAKLVLPVEPEPGKPSIAEGRIALHLGWSHAGRPADDLIRKCVAWTWRVKLSLSTERDLFSRLREEAEKVAIKVF
SDNLRDLLLAAPAGPRAVMGLDPGIRTGVKVAVVDATGKLVETATVYPHEPRRDWEGSLHTLARLVQKHGVQLVAIGNGT
ASRETDKLAADLLKLVAKADLGFEKVVVSEAGASVYSASEYASQEMPDVDVSLRGAASIARRLQDPLAELVKIDPKSIGV
GQYQHDVNQSELARTLDAVVEDCVNSVGVDLNTASAPLLSRVSGLSGSVAKAVVRWREANGAFRSRRQLMEVAGLGAKTF
EQSAGFLRIRGGDNPLDMTGVHPETYPVVERILAHTAKPVNEIMGRADMLKQLKPELFANEKFGVITVRDILAELEKPGR
DPRPDFKVARFNDGVEDIADLKEGMVLEGTVSNVAQFGAFVDLGVHQDGLVHVSQLSHKFVQDAREIVKTGDIVKVKVLE
VDPVRKRISLTMKLDAAPARRDQDGRGPRENRFEGAGRGYAQPARRAADPAPQSAMASAFAKLQSHKR

Sequences:

>Translated_788_residues
MQQIIRQLATEIRVGEQQVRAAVDLLDGGATVPFIARYRKEATGGLDDVQLRELEARLAYLRELEDRRAAVLKAIDEQGK
LTDALRAAIAAAPTKQELEDIYLPYKQKRRTKGQIAKEFGIEPLADRLFADPTLDPAVEAQAFLRPPEVLDDGKPGADFS
TVGAVLDGVRDILSERWAEDAALVQSMREWLWTEGLLRSKKVESKNEADPEVAKFRDYFDYDEPIGRVPSHRALAVFRGR
ALEILEAKLVLPVEPEPGKPSIAEGRIALHLGWSHAGRPADDLIRKCVAWTWRVKLSLSTERDLFSRLREEAEKVAIKVF
SDNLRDLLLAAPAGPRAVMGLDPGIRTGVKVAVVDATGKLVETATVYPHEPRRDWEGSLHTLARLVQKHGVQLVAIGNGT
ASRETDKLAADLLKLVAKADLGFEKVVVSEAGASVYSASEYASQEMPDVDVSLRGAASIARRLQDPLAELVKIDPKSIGV
GQYQHDVNQSELARTLDAVVEDCVNSVGVDLNTASAPLLSRVSGLSGSVAKAVVRWREANGAFRSRRQLMEVAGLGAKTF
EQSAGFLRIRGGDNPLDMTGVHPETYPVVERILAHTAKPVNEIMGRADMLKQLKPELFANEKFGVITVRDILAELEKPGR
DPRPDFKVARFNDGVEDIADLKEGMVLEGTVSNVAQFGAFVDLGVHQDGLVHVSQLSHKFVQDAREIVKTGDIVKVKVLE
VDPVRKRISLTMKLDAAPARRDQDGRGPRENRFEGAGRGYAQPARRAADPAPQSAMASAFAKLQSHKR
>Mature_788_residues
MQQIIRQLATEIRVGEQQVRAAVDLLDGGATVPFIARYRKEATGGLDDVQLRELEARLAYLRELEDRRAAVLKAIDEQGK
LTDALRAAIAAAPTKQELEDIYLPYKQKRRTKGQIAKEFGIEPLADRLFADPTLDPAVEAQAFLRPPEVLDDGKPGADFS
TVGAVLDGVRDILSERWAEDAALVQSMREWLWTEGLLRSKKVESKNEADPEVAKFRDYFDYDEPIGRVPSHRALAVFRGR
ALEILEAKLVLPVEPEPGKPSIAEGRIALHLGWSHAGRPADDLIRKCVAWTWRVKLSLSTERDLFSRLREEAEKVAIKVF
SDNLRDLLLAAPAGPRAVMGLDPGIRTGVKVAVVDATGKLVETATVYPHEPRRDWEGSLHTLARLVQKHGVQLVAIGNGT
ASRETDKLAADLLKLVAKADLGFEKVVVSEAGASVYSASEYASQEMPDVDVSLRGAASIARRLQDPLAELVKIDPKSIGV
GQYQHDVNQSELARTLDAVVEDCVNSVGVDLNTASAPLLSRVSGLSGSVAKAVVRWREANGAFRSRRQLMEVAGLGAKTF
EQSAGFLRIRGGDNPLDMTGVHPETYPVVERILAHTAKPVNEIMGRADMLKQLKPELFANEKFGVITVRDILAELEKPGR
DPRPDFKVARFNDGVEDIADLKEGMVLEGTVSNVAQFGAFVDLGVHQDGLVHVSQLSHKFVQDAREIVKTGDIVKVKVLE
VDPVRKRISLTMKLDAAPARRDQDGRGPRENRFEGAGRGYAQPARRAADPAPQSAMASAFAKLQSHKR

Specific function: Unknown

COG id: COG2183

COG function: function code K; Transcriptional accessory protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

Organism=Homo sapiens, GI221136781, Length=800, Percent_Identity=33.5, Blast_Score=379, Evalue=1e-105,
Organism=Homo sapiens, GI27597090, Length=424, Percent_Identity=26.6509433962264, Blast_Score=92, Evalue=2e-18,
Organism=Escherichia coli, GI87082262, Length=769, Percent_Identity=60.3381014304291, Blast_Score=858, Evalue=0.0,
Organism=Escherichia coli, GI1787140, Length=76, Percent_Identity=46.0526315789474, Blast_Score=68, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17511129, Length=721, Percent_Identity=28.8488210818308, Blast_Score=234, Evalue=2e-61,
Organism=Caenorhabditis elegans, GI17552892, Length=366, Percent_Identity=27.8688524590164, Blast_Score=80, Evalue=6e-15,
Organism=Drosophila melanogaster, GI62484314, Length=773, Percent_Identity=29.6248382923674, Blast_Score=328, Evalue=7e-90,
Organism=Drosophila melanogaster, GI24640080, Length=413, Percent_Identity=24.2130750605327, Blast_Score=81, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR022967
- InterPro:   IPR018974
- InterPro:   IPR023097 [H]

Pfam domain/function: PF00575 S1; PF09371 Tex_N [H]

EC number: NA

Molecular weight: Translated: 86418; Mature: 86418

Theoretical pI: Translated: 6.87; Mature: 6.87

Prosite motif: PS50126 S1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQQIIRQLATEIRVGEQQVRAAVDLLDGGATVPFIARYRKEATGGLDDVQLRELEARLAY
CHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
LRELEDRRAAVLKAIDEQGKLTDALRAAIAAAPTKQELEDIYLPYKQKRRTKGQIAKEFG
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHHC
IEPLADRLFADPTLDPAVEAQAFLRPPEVLDDGKPGADFSTVGAVLDGVRDILSERWAED
CCHHHHHHHCCCCCCHHHHHHHHCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
AALVQSMREWLWTEGLLRSKKVESKNEADPEVAKFRDYFDYDEPIGRVPSHRALAVFRGR
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCC
ALEILEAKLVLPVEPEPGKPSIAEGRIALHLGWSHAGRPADDLIRKCVAWTWRVKLSLST
HHHHHHCEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHEEEEEEEECH
ERDLFSRLREEAEKVAIKVFSDNLRDLLLAAPAGPRAVMGLDPGIRTGVKVAVVDATGKL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCEEEEEECCCCC
VETATVYPHEPRRDWEGSLHTLARLVQKHGVQLVAIGNGTASRETDKLAADLLKLVAKAD
EEEEECCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC
LGFEKVVVSEAGASVYSASEYASQEMPDVDVSLRGAASIARRLQDPLAELVKIDPKSIGV
CCHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC
GQYQHDVNQSELARTLDAVVEDCVNSVGVDLNTASAPLLSRVSGLSGSVAKAVVRWREAN
CHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHCC
GAFRSRRQLMEVAGLGAKTFEQSAGFLRIRGGDNPLDMTGVHPETYPVVERILAHTAKPV
CHHHHHHHHHHHHCCCHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCHH
NEIMGRADMLKQLKPELFANEKFGVITVRDILAELEKPGRDPRPDFKVARFNDGVEDIAD
HHHHHHHHHHHHHCHHHHCCCCCCEEEHHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHH
LKEGMVLEGTVSNVAQFGAFVDLGVHQDGLVHVSQLSHKFVQDAREIVKTGDIVKVKVLE
HHCCEEEECHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEEE
VDPVRKRISLTMKLDAAPARRDQDGRGPRENRFEGAGRGYAQPARRAADPAPQSAMASAF
CCHHHHHEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHH
AKLQSHKR
HHHHHCCC
>Mature Secondary Structure
MQQIIRQLATEIRVGEQQVRAAVDLLDGGATVPFIARYRKEATGGLDDVQLRELEARLAY
CHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
LRELEDRRAAVLKAIDEQGKLTDALRAAIAAAPTKQELEDIYLPYKQKRRTKGQIAKEFG
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHHC
IEPLADRLFADPTLDPAVEAQAFLRPPEVLDDGKPGADFSTVGAVLDGVRDILSERWAED
CCHHHHHHHCCCCCCHHHHHHHHCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
AALVQSMREWLWTEGLLRSKKVESKNEADPEVAKFRDYFDYDEPIGRVPSHRALAVFRGR
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCC
ALEILEAKLVLPVEPEPGKPSIAEGRIALHLGWSHAGRPADDLIRKCVAWTWRVKLSLST
HHHHHHCEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHEEEEEEEECH
ERDLFSRLREEAEKVAIKVFSDNLRDLLLAAPAGPRAVMGLDPGIRTGVKVAVVDATGKL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCEEEEEECCCCC
VETATVYPHEPRRDWEGSLHTLARLVQKHGVQLVAIGNGTASRETDKLAADLLKLVAKAD
EEEEECCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC
LGFEKVVVSEAGASVYSASEYASQEMPDVDVSLRGAASIARRLQDPLAELVKIDPKSIGV
CCHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC
GQYQHDVNQSELARTLDAVVEDCVNSVGVDLNTASAPLLSRVSGLSGSVAKAVVRWREAN
CHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHCC
GAFRSRRQLMEVAGLGAKTFEQSAGFLRIRGGDNPLDMTGVHPETYPVVERILAHTAKPV
CHHHHHHHHHHHHCCCHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCHH
NEIMGRADMLKQLKPELFANEKFGVITVRDILAELEKPGRDPRPDFKVARFNDGVEDIAD
HHHHHHHHHHHHHCHHHHCCCCCCEEEHHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHH
LKEGMVLEGTVSNVAQFGAFVDLGVHQDGLVHVSQLSHKFVQDAREIVKTGDIVKVKVLE
HHCCEEEECHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEEE
VDPVRKRISLTMKLDAAPARRDQDGRGPRENRFEGAGRGYAQPARRAADPAPQSAMASAF
CCHHHHHEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHH
AKLQSHKR
HHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503; 10493123 [H]