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The map label for this gene is cspE [H]

Identifier: 120611988

GI number: 120611988

Start: 3685585

End: 3685797

Strand: Direct

Name: cspE [H]

Synonym: Aave_3333

Alternate gene names: 120611988

Gene position: 3685585-3685797 (Clockwise)

Preceding gene: 120611987

Following gene: 120611989

Centisome position: 68.85

GC content: 60.56

Gene sequence:

>213_bases
ATGACCACACAAACCGGCATCGTGAAATGGTTCAACGAAGGCAAGGGCTTCGGCTTCATCGCCCCCGACGACGGCGGCAA
GGATCTCTTTGCCCACTTCCGTGAAATCCAGGGCGGCGGCTTCAAGACGCTGGCCGAGAACCAGCACGTGCAGTTCGAAG
TCACCCAGGGTGCCAAGGGTCCGCAGGCCTCCAACATCCGTGTCGTGAGCTGA

Upstream 100 bases:

>100_bases
GGTTTTTCCGGCGGCTGTGTCGAACCTCCCTTGGTGATTTTCTTGGCGTCTCTTCGCCGGATGCGTTTTTGGCTTCCGGC
AACCTTGAAAGGAAATCGAC

Downstream 100 bases:

>100_bases
GGGGCCAAGGGCCGTCCAGGCCCAGCCAACCTGCTCTCAGGCCATCCCACTCAAAAGCGCGGCTCGTCCGCGCTTTTTCT
TTTCCGGAAGGCGTCGTTGC

Product: cold-shock DNA-binding protein family protein

Products: NA

Alternate protein names: CSP-E [H]

Number of amino acids: Translated: 70; Mature: 69

Protein sequence:

>70_residues
MTTQTGIVKWFNEGKGFGFIAPDDGGKDLFAHFREIQGGGFKTLAENQHVQFEVTQGAKGPQASNIRVVS

Sequences:

>Translated_70_residues
MTTQTGIVKWFNEGKGFGFIAPDDGGKDLFAHFREIQGGGFKTLAENQHVQFEVTQGAKGPQASNIRVVS
>Mature_69_residues
TTQTGIVKWFNEGKGFGFIAPDDGGKDLFAHFREIQGGGFKTLAENQHVQFEVTQGAKGPQASNIRVVS

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1786841, Length=66, Percent_Identity=65.1515151515152, Blast_Score=94, Evalue=1e-21,
Organism=Escherichia coli, GI1788126, Length=69, Percent_Identity=60.8695652173913, Blast_Score=89, Evalue=4e-20,
Organism=Escherichia coli, GI2367114, Length=62, Percent_Identity=61.2903225806452, Blast_Score=88, Evalue=9e-20,
Organism=Escherichia coli, GI1789979, Length=63, Percent_Identity=61.9047619047619, Blast_Score=86, Evalue=4e-19,
Organism=Escherichia coli, GI1787839, Length=65, Percent_Identity=55.3846153846154, Blast_Score=82, Evalue=6e-18,
Organism=Escherichia coli, GI1787834, Length=63, Percent_Identity=58.7301587301587, Blast_Score=82, Evalue=8e-18,
Organism=Escherichia coli, GI1787107, Length=66, Percent_Identity=56.0606060606061, Blast_Score=77, Evalue=3e-16,
Organism=Drosophila melanogaster, GI24658520, Length=65, Percent_Identity=40, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7598; Mature: 7466

Theoretical pI: Translated: 7.70; Mature: 7.70

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTQTGIVKWFNEGKGFGFIAPDDGGKDLFAHFREIQGGGFKTLAENQHVQFEVTQGAKG
CCCCCCEEEEECCCCCEEEECCCCCCHHHHHHHHHHCCCCCEECCCCCEEEEEECCCCCC
PQASNIRVVS
CCCCCEEEEC
>Mature Secondary Structure 
TTQTGIVKWFNEGKGFGFIAPDDGGKDLFAHFREIQGGGFKTLAENQHVQFEVTQGAKG
CCCCCEEEEECCCCCEEEECCCCCCHHHHHHHHHHCCCCCEECCCCCEEEEEECCCCCC
PQASNIRVVS
CCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10993077 [H]