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The map label for this gene is ihfB [H]

Identifier: 120611942

GI number: 120611942

Start: 3634338

End: 3634667

Strand: Direct

Name: ihfB [H]

Synonym: Aave_3286

Alternate gene names: 120611942

Gene position: 3634338-3634667 (Clockwise)

Preceding gene: 120611941

Following gene: 120611943

Centisome position: 67.9

GC content: 70.61

Gene sequence:

>330_bases
ATGACCCGATCAGACCTCGTCGAAGAACTTGCCGCCCGTTTCGGCCAGCTCACGCAACGCGATGCCGAAGCCGCCGTCAA
GACCATCCTGGATGCCGTGGGCGATGCGCTGGTGCGCGGCCACCGCATCGAGGTGCGCGGGTTCGGCAGCTTTTCGGTCA
ACCGCCGCCCGCCGCGCATGGGGCGCAACCCCCGCAGCGGCGAGGCCGTGCACATCCCCGAGAAGCGCGTTCCGCATTTC
AAGCCGGGCAAGGCCCTGCGCGAAGCCGTGGACCGCCGCACCGCCGAGATGGGCATCGGCATCGCGGCCGACCCGTCCGA
CGCCGCCTGA

Upstream 100 bases:

>100_bases
AAGTGCGCATTCCAGCCCCATGCCCCAGCGCCGCGCGCAAATGCCGGACTCCGGCATGGACCACCTTTTCGCCGATTCCT
GGCGCCACAGACCGGACCCC

Downstream 100 bases:

>100_bases
CGGAGCCCGCCACGCCGCCTCCGGCGCATGCGCGGGGGCGGGCCTGACCGTAGAATCCTCCCACCATCGAGGAGACGCAT
GGCATGAAGTATTTCCTGTG

Product: histone family protein DNA-binding protein

Products: NA

Alternate protein names: IHF-beta [H]

Number of amino acids: Translated: 109; Mature: 108

Protein sequence:

>109_residues
MTRSDLVEELAARFGQLTQRDAEAAVKTILDAVGDALVRGHRIEVRGFGSFSVNRRPPRMGRNPRSGEAVHIPEKRVPHF
KPGKALREAVDRRTAEMGIGIAADPSDAA

Sequences:

>Translated_109_residues
MTRSDLVEELAARFGQLTQRDAEAAVKTILDAVGDALVRGHRIEVRGFGSFSVNRRPPRMGRNPRSGEAVHIPEKRVPHF
KPGKALREAVDRRTAEMGIGIAADPSDAA
>Mature_108_residues
TRSDLVEELAARFGQLTQRDAEAAVKTILDAVGDALVRGHRIEVRGFGSFSVNRRPPRMGRNPRSGEAVHIPEKRVPHFK
PGKALREAVDRRTAEMGIGIAADPSDAA

Specific function: This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control [H]

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial histone-like protein family [H]

Homologues:

Organism=Escherichia coli, GI1787141, Length=88, Percent_Identity=50, Blast_Score=97, Evalue=3e-22,
Organism=Escherichia coli, GI1790433, Length=90, Percent_Identity=37.7777777777778, Blast_Score=74, Evalue=2e-15,
Organism=Escherichia coli, GI1786644, Length=91, Percent_Identity=36.2637362637363, Blast_Score=69, Evalue=9e-14,
Organism=Escherichia coli, GI1788005, Length=91, Percent_Identity=34.0659340659341, Blast_Score=64, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000119
- InterPro:   IPR010992
- InterPro:   IPR005685 [H]

Pfam domain/function: PF00216 Bac_DNA_binding [H]

EC number: NA

Molecular weight: Translated: 11884; Mature: 11752

Theoretical pI: Translated: 11.03; Mature: 11.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRSDLVEELAARFGQLTQRDAEAAVKTILDAVGDALVRGHRIEVRGFGSFSVNRRPPRM
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCC
GRNPRSGEAVHIPEKRVPHFKPGKALREAVDRRTAEMGIGIAADPSDAA
CCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
TRSDLVEELAARFGQLTQRDAEAAVKTILDAVGDALVRGHRIEVRGFGSFSVNRRPPRM
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCC
GRNPRSGEAVHIPEKRVPHFKPGKALREAVDRRTAEMGIGIAADPSDAA
CCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11823852 [H]