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The map label for this gene is yncD [H]

Identifier: 120611925

GI number: 120611925

Start: 3612875

End: 3614941

Strand: Reverse

Name: yncD [H]

Synonym: Aave_3269

Alternate gene names: 120611925

Gene position: 3614941-3612875 (Counterclockwise)

Preceding gene: 120611926

Following gene: 120611923

Centisome position: 67.53

GC content: 67.1

Gene sequence:

>2067_bases
TTGTTTTCCCCCAGAGTGCTGCCCCTCGCGGTGGCATCCCCCTTCCTGTGCCTGCCCGCCGCCGCCCAGACGGCCGCCGA
TTCCGTGTCCACCCTGGGCGAGGTGTCGGTGCGCACGGGCACCAGCGGCCCCCTCGTGCCCAATACCCTGCTGACGTCTG
TCGATATCCTGGGCGCCGACAAGATCGAGAACCAGAACGTCGGCACCAGCTGGGAGCTGGTCGGCCAGCTCCCAGGCATC
CAGCTCACCGAAACCCGCATGGGAGCCGAGTCGGGCAAGGCCACGTTCCGTGCCTTCAACGGCGAGGGCTACATCAACGG
CATCAAGGTGCTGATCGATGGCATTCCCAGCAACGTGAACAGCGGCAACCAGCGCTTCATCGACATGATCTTCCCGCTGG
AGATCGACTACATCGAGGTGGTGCGCGGCACCAACGACCCGCGCTATGGCCTGCACAACATCGGCGGCAACATCAACTTC
GGCACGCGCCAGGGCGGCGACTACACCGAGGGCCGCCTGACCTACGGCAGCGGTGCGACGCGCGAGGCGCAACTGGCGCT
GGGCCGCGAATCGGGCGGCTTCGCGCAGAACTACTTCCTGGCGAAGCAGGAGTCCAACGGCTATCGCCCGCATGCCCATT
CCGACAAGTATTCTCTGGGCGGCAAGTGGTTCCTGACCTCGGAGGGCGGCGCGCTCAAGGGCGGCATCGTGGCGCGTCTC
TATTCCCACCAGGCCGAGGAGCCCGGCTTCCTGACGGCGGAGCAACTGGCCCGGGACCGCAACCAGTCGCCCGCCAAGAA
TGCCAATGACGGCGACGACCGCGACATGCGCCACCTGAGCGCCCATCTGGACTGGCAGATCGATCCCCGCCTGTTCCTGA
GCAACAAGCTCTACCTGAACCGCTACGAGGACGACCGGCGCATCACCTTCACCGACAGCCAGGCCGCCAGCCTTTTCAAC
GGACCGCGGCAACTGCGCCGCTGGGACGAGACCCAGCACGGATTGCTGAGCACCCTGACCTGGCGCGCGAGCAAGTCGCT
GTCCGTCGATGGCGGCATCAACGTGGAGCGCCAGCGCAACACCTACGAGCGCTACCGTTATCCGTATGCGGTGCCGACGA
ATTTCGACGTGCCCGGCGCGGTGTCCAACAACGACCGCTACACGCTGAACAACGTGGGCGCCTACGTGCAGGCCGTCGTG
CAGGCCACCGACCGGCTCAAGCTGGTGCCCGGCATCCGCGCCGACCGCTTCACGGGCCACACGGTGCCGAACACCGGCGC
GCAGGGCTCGCTGCAGGACTATGGCTGGATCCACCAGCCCAAGTTCAGCCTGGTCTATGGCGCCACGGACACCGTGAGCG
TGTATGCCAACTGGGGCCGTACCTTCCAGATCCTGACCGGCTCGCGCGCGCCGGCCTACATCACCTCGCCGACGCAGCCG
CGCTTCGCGCCTTCGATGAACACCGGCAAGGAGCTGGGCGTGAAGTTCACCCCCGGCCCGGGCACCGAGATGCGCGCCGC
CGTCTGGCAGCAGGACGCGACCGATGAAGTCGCCAACATGCCTGCCACCGGCACCACCGTGGGCCTGGGGCAGACCCGCC
GCCGAGGGCTGGATGTGCAGGCATCGACCAAGGTGGGCGGCCGCTGGCAGCTGTGGGCCTCGCATTCCCTGCAGGAGGCC
AAGGTGGTGAGCGCCTTCACGGCCGATGGCGCGTCGCTGGCGGGCAAGGAAGTGTTCTCCACGCCGCGCCACATCTCGAA
CGTGGGGGTGGAATACCGCGCCACGCCCGAGCTGCGGCTGGGGCTGCAGGGCAGGGCGCAGGGCAGCTACTACATCGACA
GCCTGAACGCCAAGGGCAAGTACGGCGCCTTCGTGCTGTTCGATGCCAACGTGCGCTATGAGCTGACCCGCGCCGTGAGC
CTGGACCTGCAGGTCAAGAACCTGGCCGGCAGGAAGTCCGTCTACGCCTGGGACGATATCTTCTTCTGGCCGGCCGGCAG
CACCCAGCCCATGTTCGCGCCCGGGCCGGGGCGGGCGGTCTATGTCTCGCTGAACTACAAGATGTAG

Upstream 100 bases:

>100_bases
CCATGGCCCCCATGGAACGGCTGCGTGCGCCTGGCTTCGCCTGTGTGGCGACGCCGTGGCTTTGTTCGTGCGGACTTCGC
GTCCGTGGAGAGATTCCGTG

Downstream 100 bases:

>100_bases
CCGGCGCAGGATGCGCGCGTCTCCCGTCGGCCCGGAGCGCTCTCGGGCGTGGGCTCCGAAAAAACCGGCGGCGCGATCAG
CGGGCCGCAGCGGGCTCCAT

Product: TonB-dependent receptor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 688; Mature: 688

Protein sequence:

>688_residues
MFSPRVLPLAVASPFLCLPAAAQTAADSVSTLGEVSVRTGTSGPLVPNTLLTSVDILGADKIENQNVGTSWELVGQLPGI
QLTETRMGAESGKATFRAFNGEGYINGIKVLIDGIPSNVNSGNQRFIDMIFPLEIDYIEVVRGTNDPRYGLHNIGGNINF
GTRQGGDYTEGRLTYGSGATREAQLALGRESGGFAQNYFLAKQESNGYRPHAHSDKYSLGGKWFLTSEGGALKGGIVARL
YSHQAEEPGFLTAEQLARDRNQSPAKNANDGDDRDMRHLSAHLDWQIDPRLFLSNKLYLNRYEDDRRITFTDSQAASLFN
GPRQLRRWDETQHGLLSTLTWRASKSLSVDGGINVERQRNTYERYRYPYAVPTNFDVPGAVSNNDRYTLNNVGAYVQAVV
QATDRLKLVPGIRADRFTGHTVPNTGAQGSLQDYGWIHQPKFSLVYGATDTVSVYANWGRTFQILTGSRAPAYITSPTQP
RFAPSMNTGKELGVKFTPGPGTEMRAAVWQQDATDEVANMPATGTTVGLGQTRRRGLDVQASTKVGGRWQLWASHSLQEA
KVVSAFTADGASLAGKEVFSTPRHISNVGVEYRATPELRLGLQGRAQGSYYIDSLNAKGKYGAFVLFDANVRYELTRAVS
LDLQVKNLAGRKSVYAWDDIFFWPAGSTQPMFAPGPGRAVYVSLNYKM

Sequences:

>Translated_688_residues
MFSPRVLPLAVASPFLCLPAAAQTAADSVSTLGEVSVRTGTSGPLVPNTLLTSVDILGADKIENQNVGTSWELVGQLPGI
QLTETRMGAESGKATFRAFNGEGYINGIKVLIDGIPSNVNSGNQRFIDMIFPLEIDYIEVVRGTNDPRYGLHNIGGNINF
GTRQGGDYTEGRLTYGSGATREAQLALGRESGGFAQNYFLAKQESNGYRPHAHSDKYSLGGKWFLTSEGGALKGGIVARL
YSHQAEEPGFLTAEQLARDRNQSPAKNANDGDDRDMRHLSAHLDWQIDPRLFLSNKLYLNRYEDDRRITFTDSQAASLFN
GPRQLRRWDETQHGLLSTLTWRASKSLSVDGGINVERQRNTYERYRYPYAVPTNFDVPGAVSNNDRYTLNNVGAYVQAVV
QATDRLKLVPGIRADRFTGHTVPNTGAQGSLQDYGWIHQPKFSLVYGATDTVSVYANWGRTFQILTGSRAPAYITSPTQP
RFAPSMNTGKELGVKFTPGPGTEMRAAVWQQDATDEVANMPATGTTVGLGQTRRRGLDVQASTKVGGRWQLWASHSLQEA
KVVSAFTADGASLAGKEVFSTPRHISNVGVEYRATPELRLGLQGRAQGSYYIDSLNAKGKYGAFVLFDANVRYELTRAVS
LDLQVKNLAGRKSVYAWDDIFFWPAGSTQPMFAPGPGRAVYVSLNYKM
>Mature_688_residues
MFSPRVLPLAVASPFLCLPAAAQTAADSVSTLGEVSVRTGTSGPLVPNTLLTSVDILGADKIENQNVGTSWELVGQLPGI
QLTETRMGAESGKATFRAFNGEGYINGIKVLIDGIPSNVNSGNQRFIDMIFPLEIDYIEVVRGTNDPRYGLHNIGGNINF
GTRQGGDYTEGRLTYGSGATREAQLALGRESGGFAQNYFLAKQESNGYRPHAHSDKYSLGGKWFLTSEGGALKGGIVARL
YSHQAEEPGFLTAEQLARDRNQSPAKNANDGDDRDMRHLSAHLDWQIDPRLFLSNKLYLNRYEDDRRITFTDSQAASLFN
GPRQLRRWDETQHGLLSTLTWRASKSLSVDGGINVERQRNTYERYRYPYAVPTNFDVPGAVSNNDRYTLNNVGAYVQAVV
QATDRLKLVPGIRADRFTGHTVPNTGAQGSLQDYGWIHQPKFSLVYGATDTVSVYANWGRTFQILTGSRAPAYITSPTQP
RFAPSMNTGKELGVKFTPGPGTEMRAAVWQQDATDEVANMPATGTTVGLGQTRRRGLDVQASTKVGGRWQLWASHSLQEA
KVVSAFTADGASLAGKEVFSTPRHISNVGVEYRATPELRLGLQGRAQGSYYIDSLNAKGKYGAFVLFDANVRYELTRAVS
LDLQVKNLAGRKSVYAWDDIFFWPAGSTQPMFAPGPGRAVYVSLNYKM

Specific function: Probable receptor, tonB-dependent [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tonB-dependent receptor family [H]

Homologues:

Organism=Escherichia coli, GI1787723, Length=642, Percent_Identity=23.208722741433, Blast_Score=75, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012910
- InterPro:   IPR000531 [H]

Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]

EC number: NA

Molecular weight: Translated: 75334; Mature: 75334

Theoretical pI: Translated: 9.36; Mature: 9.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.1 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.1 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFSPRVLPLAVASPFLCLPAAAQTAADSVSTLGEVSVRTGTSGPLVPNTLLTSVDILGAD
CCCCCEEHHHHCCCCEEECCHHHHHHHHHHHHHCEEEECCCCCCCCCHHHHHEEEEECCC
KIENQNVGTSWELVGQLPGIQLTETRMGAESGKATFRAFNGEGYINGIKVLIDGIPSNVN
CCCCCCCCCCHHHHCCCCCCEEEHHHCCCCCCCEEEEEECCCCCCCEEEEEEECCCCCCC
SGNQRFIDMIFPLEIDYIEVVRGTNDPRYGLHNIGGNINFGTRQGGDYTEGRLTYGSGAT
CCCCEEEEEEECCCCCEEEEEECCCCCCCCHHHCCCCEECCCCCCCCCCCCEEEECCCCC
REAQLALGRESGGFAQNYFLAKQESNGYRPHAHSDKYSLGGKWFLTSEGGALKGGIVARL
EEEEEEECCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHH
YSHQAEEPGFLTAEQLARDRNQSPAKNANDGDDRDMRHLSAHLDWQIDPRLFLSNKLYLN
HHCCCCCCCCEEHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCEEECCEEEECCEEEEE
RYEDDRRITFTDSQAASLFNGPRQLRRWDETQHGLLSTLTWRASKSLSVDGGINVERQRN
EECCCCEEEEECCHHHHHHCCHHHHHHHHHHHHHHHHHHEECCCCCEECCCCCCCHHCCC
TYERYRYPYAVPTNFDVPGAVSNNDRYTLNNVGAYVQAVVQATDRLKLVPGIRADRFTGH
CHHHHCCCEECCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHCEEECCCCCCCCCCCC
TVPNTGAQGSLQDYGWIHQPKFSLVYGATDTVSVYANWGRTFQILTGSRAPAYITSPTQP
CCCCCCCCCCHHHCCCEECCCEEEEECCCCEEEEEECCCCEEEEEECCCCCEEEECCCCC
RFAPSMNTGKELGVKFTPGPGTEMRAAVWQQDATDEVANMPATGTTVGLGQTRRRGLDVQ
CCCCCCCCCHHCCEEECCCCCCCHHHHHHCCCCHHHHHCCCCCCCEECCCCHHHCCCCEE
ASTKVGGRWQLWASHSLQEAKVVSAFTADGASLAGKEVFSTPRHISNVGVEYRATPELRL
ECCCCCCEEEEEECCCCCHHHEEEEEECCCCHHCCHHHHCCCHHHHHCCEEEECCCCEEE
GLQGRAQGSYYIDSLNAKGKYGAFVLFDANVRYELTRAVSLDLQVKNLAGRKSVYAWDDI
CCCCCCCCCEEEECCCCCCCCCEEEEEECCCEEEEEEEEEEEEEEECCCCCCCEEEEEEE
FFWPAGSTQPMFAPGPGRAVYVSLNYKM
EEECCCCCCCEECCCCCCEEEEEEEECC
>Mature Secondary Structure
MFSPRVLPLAVASPFLCLPAAAQTAADSVSTLGEVSVRTGTSGPLVPNTLLTSVDILGAD
CCCCCEEHHHHCCCCEEECCHHHHHHHHHHHHHCEEEECCCCCCCCCHHHHHEEEEECCC
KIENQNVGTSWELVGQLPGIQLTETRMGAESGKATFRAFNGEGYINGIKVLIDGIPSNVN
CCCCCCCCCCHHHHCCCCCCEEEHHHCCCCCCCEEEEEECCCCCCCEEEEEEECCCCCCC
SGNQRFIDMIFPLEIDYIEVVRGTNDPRYGLHNIGGNINFGTRQGGDYTEGRLTYGSGAT
CCCCEEEEEEECCCCCEEEEEECCCCCCCCHHHCCCCEECCCCCCCCCCCCEEEECCCCC
REAQLALGRESGGFAQNYFLAKQESNGYRPHAHSDKYSLGGKWFLTSEGGALKGGIVARL
EEEEEEECCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHH
YSHQAEEPGFLTAEQLARDRNQSPAKNANDGDDRDMRHLSAHLDWQIDPRLFLSNKLYLN
HHCCCCCCCCEEHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCEEECCEEEECCEEEEE
RYEDDRRITFTDSQAASLFNGPRQLRRWDETQHGLLSTLTWRASKSLSVDGGINVERQRN
EECCCCEEEEECCHHHHHHCCHHHHHHHHHHHHHHHHHHEECCCCCEECCCCCCCHHCCC
TYERYRYPYAVPTNFDVPGAVSNNDRYTLNNVGAYVQAVVQATDRLKLVPGIRADRFTGH
CHHHHCCCEECCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHCEEECCCCCCCCCCCC
TVPNTGAQGSLQDYGWIHQPKFSLVYGATDTVSVYANWGRTFQILTGSRAPAYITSPTQP
CCCCCCCCCCHHHCCCEECCCEEEEECCCCEEEEEECCCCEEEEEECCCCCEEEECCCCC
RFAPSMNTGKELGVKFTPGPGTEMRAAVWQQDATDEVANMPATGTTVGLGQTRRRGLDVQ
CCCCCCCCCHHCCEEECCCCCCCHHHHHHCCCCHHHHHCCCCCCCEECCCCHHHCCCCEE
ASTKVGGRWQLWASHSLQEAKVVSAFTADGASLAGKEVFSTPRHISNVGVEYRATPELRL
ECCCCCCEEEEEECCCCCHHHEEEEEECCCCHHCCHHHHCCCHHHHHCCEEEECCCCEEE
GLQGRAQGSYYIDSLNAKGKYGAFVLFDANVRYELTRAVSLDLQVKNLAGRKSVYAWDDI
CCCCCCCCCEEEECCCCCCCCCEEEEEECCCEEEEEEEEEEEEEEECCCCCCCEEEEEEE
FFWPAGSTQPMFAPGPGRAVYVSLNYKM
EEECCCCCCCEECCCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]