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The map label for this gene is yoaA [C]

Identifier: 120611900

GI number: 120611900

Start: 3577629

End: 3579851

Strand: Reverse

Name: yoaA [C]

Synonym: Aave_3242

Alternate gene names: 120611900

Gene position: 3579851-3577629 (Counterclockwise)

Preceding gene: 120611902

Following gene: 120611898

Centisome position: 66.88

GC content: 74.58

Gene sequence:

>2223_bases
TTGAGCGCCGGGGCGGAACATCCCGGCACGCTTGTGCAGGCGGTGGCGGCCGCTTTCGCGGAAGACGGGCCGCTGGCGAT
CGCGCAGGCGCGCTTCCAGCCGCGGGCGGGGCAGGCCGCCATGGCCGCGGCCGTCGCGGAAACCATCGACCGGGGCGGGG
CGCTCGTCGTGGAGGCCGGCACGGGCGTCGGGAAGACCTTCGCCTACCTGGTGCCGGCGCTGCTCAGCGGGGAGCGCGTG
CTGATCTCCACCGCCACGAAAGCGCTGCAGGACCAGCTCCACAGCCGCGACCTGCCCCGGCTGCTGCAGGCGCTGGCATT
GCCCGCGCGCACGGCTCTGCTCAAGGGGCGCGGCAGCTATCTGTGCCTGCACCGGCTGGGCATCGCGCGCCAGCATCCTT
CGGCGGCCGACACGGCCGTCGCCCGCGTGCTCGCGCGCGCGGAACTGTGGGCGCACGCCACTGCCACCGGTGATCTCGCG
GAACTGCCGGGCTGGGACGAACGGTCGGCCGCGACGCCGCTGTTCACCTCCACGCGCGACAACTGCCTGGGCTCGTCCTG
CCCGCGCTTTCGCGAGTGCCATGTGTACCAGGCCCGGCGCGAGGCGATGGCGGCCGACGTGGTGGTCATCAACCACCATC
TCTTCTTCGCGGACCACGCCATCCGCGGATCGGGCGTGGCGGAACTGCTGCCCAGCGTGCGCGTGGTGGTGTTCGACGAG
GCCCACCAGCTCAACGAGACGGGCGTGCAGTTCATGGGCACGCAGATGGGCTCGTCCCACTGGCTGGACTTCGCGCGCGA
CGTGCTGGCGGCAGGGCTGCAGCTCGCCCGGGGCCTGGCGGACTGGCAGGGCGCCGCCGCCGCGCTCGAGCGGGCCGCGC
GCGACTGGCGCATGGCCGCCGGGAGCACTCGGGCGCCGGGGACGCGCCTGCGCTGGTCGGGGCCGGTGCCCGATGGCGTG
GAGCGTGCGGCCTGGGACGACGCACTCGGCCGGTTGTCGGCCGCGGCGCGCGAGGCGCTGGCGGCGCTCGACACGGTCAG
CGAGATCGCGCCCGACTTCGTGCGGCTGCACGAGCGCTGCGTCGAGTTGATGGAACGGCTGGGCCTGTTCCTGGACCCGG
CCCCGCCGGATGCGGTGCGCTGGCTGGAGGTCGGGCTGCACCAGGTGCGGGCCTGCCTGGTTCCGCTGGACATCGCGCAG
CCGCTGCGCAGGCTGTGGTTTCCGCACGAGGGGGCCGCGGAGCCGTCCGCCGATGCCGCTACGGACGCCGCCCCCCGCGC
GCCGGACGACCTGCCCTGGAGCGACGAAGGCGGCGACCCCGATCCGTGGGCAGCGCCCGTCCCCGGTTCCGCGCTGCCGG
CCCCCGGGGCTGCGGCACTCCCCGGTGCGGGTTCCGGCGACGCGGGAGGGCGCCCGCGTGCCTGGGTGTTCACCTCGGCC
ACGCTGGGCGACGATGCCTCGCTGAAATGGTTCACGGCGGCCTGCGGGCTGGAAGGCGCCCGCGTGCTGCAGGTGCCCAG
CCCCTTCGACTACGTGGCCCAGGCCGCGCTCTACGTGCCGCGCCAGCTGCCTGCCCCGTCCGACCCGGGCCACGGGGCCG
CGGTGGCGCGCTGGGCGGGAGATGCCGCGCGCGTGCTGGGCGGGCGCACGCTGGTGCTGACCACCACGTTGAAGGCGCTG
CGCACGATCGGCGACGCGCTGCGGGAGCGTTTTCCCGACGGCTCCGGCATCGAGGTGCTGGTGCAGGGCGACTGGCCCAA
GCGCCGGCTCATGGAACGTTTCCGCGAAGCCGATGCCGGCGGGGACCGCCCGGGGTGCGTGCTGGTGGCGTCCGCCTCGT
TCTGGGAGGGGTTCGACGTGCCCGGCGATGCGCTGCAACTGGTGGTGATCGACAAGCTGCCGTTCCCGCCACCGGGCGAC
CCGGTGGTCGAGGCGCGGTCGCAGCGCCTGGAGCAGGAGGGAAAGAGTGCCTTCCGGCATTTCGCGCTGCCGGACGCGGC
CATCGCGCTCAAGCAGGGGGCGGGGCGGCTGATCCGCAACGAGCAGGACCGGGGCCTGCTCGCGGTCGCCGATGCCCGGC
TGGTGACCATGGGCTACGGCAAGCGGCTGCTGGCCGCGCTGCCGCCCATGCGCCGGATTCAGGACGAGGCGGAGTGGGAC
GAGGCGCTGCGCGGCCTGGCCGCCGTCACCAGACCTTCCACCACGGCTCCTCCTTCGCCTTGA

Upstream 100 bases:

>100_bases
GGCCGGGAATGGCCGCACGCGGCCGGGGGGCCTATTATCGAGGGATGTACCGCGTTTTCTGTGAACTGTCTCGCGCCTGC
GGCGGCCCGCGGAGCCGGAG

Downstream 100 bases:

>100_bases
AGCCGTTGCGCATGTATTCGCTCTGCGGGTAGGAGGCAGCCATCACGCGCTGGGCATCGTCGCGCAACTGGGTCATGCCC
AGCGCGTCGTAGGACTTGAT

Product: helicase c2

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 740; Mature: 739

Protein sequence:

>740_residues
MSAGAEHPGTLVQAVAAAFAEDGPLAIAQARFQPRAGQAAMAAAVAETIDRGGALVVEAGTGVGKTFAYLVPALLSGERV
LISTATKALQDQLHSRDLPRLLQALALPARTALLKGRGSYLCLHRLGIARQHPSAADTAVARVLARAELWAHATATGDLA
ELPGWDERSAATPLFTSTRDNCLGSSCPRFRECHVYQARREAMAADVVVINHHLFFADHAIRGSGVAELLPSVRVVVFDE
AHQLNETGVQFMGTQMGSSHWLDFARDVLAAGLQLARGLADWQGAAAALERAARDWRMAAGSTRAPGTRLRWSGPVPDGV
ERAAWDDALGRLSAAAREALAALDTVSEIAPDFVRLHERCVELMERLGLFLDPAPPDAVRWLEVGLHQVRACLVPLDIAQ
PLRRLWFPHEGAAEPSADAATDAAPRAPDDLPWSDEGGDPDPWAAPVPGSALPAPGAAALPGAGSGDAGGRPRAWVFTSA
TLGDDASLKWFTAACGLEGARVLQVPSPFDYVAQAALYVPRQLPAPSDPGHGAAVARWAGDAARVLGGRTLVLTTTLKAL
RTIGDALRERFPDGSGIEVLVQGDWPKRRLMERFREADAGGDRPGCVLVASASFWEGFDVPGDALQLVVIDKLPFPPPGD
PVVEARSQRLEQEGKSAFRHFALPDAAIALKQGAGRLIRNEQDRGLLAVADARLVTMGYGKRLLAALPPMRRIQDEAEWD
EALRGLAAVTRPSTTAPPSP

Sequences:

>Translated_740_residues
MSAGAEHPGTLVQAVAAAFAEDGPLAIAQARFQPRAGQAAMAAAVAETIDRGGALVVEAGTGVGKTFAYLVPALLSGERV
LISTATKALQDQLHSRDLPRLLQALALPARTALLKGRGSYLCLHRLGIARQHPSAADTAVARVLARAELWAHATATGDLA
ELPGWDERSAATPLFTSTRDNCLGSSCPRFRECHVYQARREAMAADVVVINHHLFFADHAIRGSGVAELLPSVRVVVFDE
AHQLNETGVQFMGTQMGSSHWLDFARDVLAAGLQLARGLADWQGAAAALERAARDWRMAAGSTRAPGTRLRWSGPVPDGV
ERAAWDDALGRLSAAAREALAALDTVSEIAPDFVRLHERCVELMERLGLFLDPAPPDAVRWLEVGLHQVRACLVPLDIAQ
PLRRLWFPHEGAAEPSADAATDAAPRAPDDLPWSDEGGDPDPWAAPVPGSALPAPGAAALPGAGSGDAGGRPRAWVFTSA
TLGDDASLKWFTAACGLEGARVLQVPSPFDYVAQAALYVPRQLPAPSDPGHGAAVARWAGDAARVLGGRTLVLTTTLKAL
RTIGDALRERFPDGSGIEVLVQGDWPKRRLMERFREADAGGDRPGCVLVASASFWEGFDVPGDALQLVVIDKLPFPPPGD
PVVEARSQRLEQEGKSAFRHFALPDAAIALKQGAGRLIRNEQDRGLLAVADARLVTMGYGKRLLAALPPMRRIQDEAEWD
EALRGLAAVTRPSTTAPPSP
>Mature_739_residues
SAGAEHPGTLVQAVAAAFAEDGPLAIAQARFQPRAGQAAMAAAVAETIDRGGALVVEAGTGVGKTFAYLVPALLSGERVL
ISTATKALQDQLHSRDLPRLLQALALPARTALLKGRGSYLCLHRLGIARQHPSAADTAVARVLARAELWAHATATGDLAE
LPGWDERSAATPLFTSTRDNCLGSSCPRFRECHVYQARREAMAADVVVINHHLFFADHAIRGSGVAELLPSVRVVVFDEA
HQLNETGVQFMGTQMGSSHWLDFARDVLAAGLQLARGLADWQGAAAALERAARDWRMAAGSTRAPGTRLRWSGPVPDGVE
RAAWDDALGRLSAAAREALAALDTVSEIAPDFVRLHERCVELMERLGLFLDPAPPDAVRWLEVGLHQVRACLVPLDIAQP
LRRLWFPHEGAAEPSADAATDAAPRAPDDLPWSDEGGDPDPWAAPVPGSALPAPGAAALPGAGSGDAGGRPRAWVFTSAT
LGDDASLKWFTAACGLEGARVLQVPSPFDYVAQAALYVPRQLPAPSDPGHGAAVARWAGDAARVLGGRTLVLTTTLKALR
TIGDALRERFPDGSGIEVLVQGDWPKRRLMERFREADAGGDRPGCVLVASASFWEGFDVPGDALQLVVIDKLPFPPPGDP
VVEARSQRLEQEGKSAFRHFALPDAAIALKQGAGRLIRNEQDRGLLAVADARLVTMGYGKRLLAALPPMRRIQDEAEWDE
ALRGLAAVTRPSTTAPPSP

Specific function: Unknown

COG id: COG1199

COG function: function code KL; Rad3-related DNA helicases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 helicase C-terminal domain [H]

Homologues:

Organism=Escherichia coli, GI1788110, Length=423, Percent_Identity=39.9527186761229, Blast_Score=261, Evalue=1e-70,
Organism=Escherichia coli, GI1787018, Length=242, Percent_Identity=35.5371900826446, Blast_Score=119, Evalue=7e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014001
- InterPro:   IPR014013
- InterPro:   IPR006555
- InterPro:   IPR001650
- InterPro:   IPR006935 [H]

Pfam domain/function: PF04851 ResIII [H]

EC number: =3.6.4.12 [H]

Molecular weight: Translated: 78503; Mature: 78372

Theoretical pI: Translated: 6.22; Mature: 6.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAGAEHPGTLVQAVAAAFAEDGPLAIAQARFQPRAGQAAMAAAVAETIDRGGALVVEAG
CCCCCCCCHHHHHHHHHHHCCCCCEEEHHHCCCCCCCHHHHHHHHHHHHHCCCEEEEECC
TGVGKTFAYLVPALLSGERVLISTATKALQDQLHSRDLPRLLQALALPARTALLKGRGSY
CCCCHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCE
LCLHRLGIARQHPSAADTAVARVLARAELWAHATATGDLAELPGWDERSAATPLFTSTRD
EHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCCCCCC
NCLGSSCPRFRECHVYQARREAMAADVVVINHHLFFADHAIRGSGVAELLPSVRVVVFDE
CCCCCCCCCHHHHHHHHHHHHHHHHCEEEEECEEEEECCCCCCCCHHHHHCCCEEEEECC
AHQLNETGVQFMGTQMGSSHWLDFARDVLAAGLQLARGLADWQGAAAALERAARDWRMAA
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GSTRAPGTRLRWSGPVPDGVERAAWDDALGRLSAAAREALAALDTVSEIAPDFVRLHERC
CCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VELMERLGLFLDPAPPDAVRWLEVGLHQVRACLVPLDIAQPLRRLWFPHEGAAEPSADAA
HHHHHHCCCEECCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCC
TDAAPRAPDDLPWSDEGGDPDPWAAPVPGSALPAPGAAALPGAGSGDAGGRPRAWVFTSA
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEC
TLGDDASLKWFTAACGLEGARVLQVPSPFDYVAQAALYVPRQLPAPSDPGHGAAVARWAG
CCCCCCCCCCEEHHCCCCCCEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCC
DAARVLGGRTLVLTTTLKALRTIGDALRERFPDGSGIEVLVQGDWPKRRLMERFREADAG
HHHHHHCCCEEEHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHCCC
GDRPGCVLVASASFWEGFDVPGDALQLVVIDKLPFPPPGDPVVEARSQRLEQEGKSAFRH
CCCCCEEEEEECCCCCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHH
FALPDAAIALKQGAGRLIRNEQDRGLLAVADARLVTMGYGKRLLAALPPMRRIQDEAEWD
HCCCHHHHHHHHCCCHHHCCCCCCCEEEEECCEEEECCCCHHHHHHCCCHHHHHHHHHHH
EALRGLAAVTRPSTTAPPSP
HHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
SAGAEHPGTLVQAVAAAFAEDGPLAIAQARFQPRAGQAAMAAAVAETIDRGGALVVEAG
CCCCCCCHHHHHHHHHHHCCCCCEEEHHHCCCCCCCHHHHHHHHHHHHHCCCEEEEECC
TGVGKTFAYLVPALLSGERVLISTATKALQDQLHSRDLPRLLQALALPARTALLKGRGSY
CCCCHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCE
LCLHRLGIARQHPSAADTAVARVLARAELWAHATATGDLAELPGWDERSAATPLFTSTRD
EHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCCCCCC
NCLGSSCPRFRECHVYQARREAMAADVVVINHHLFFADHAIRGSGVAELLPSVRVVVFDE
CCCCCCCCCHHHHHHHHHHHHHHHHCEEEEECEEEEECCCCCCCCHHHHHCCCEEEEECC
AHQLNETGVQFMGTQMGSSHWLDFARDVLAAGLQLARGLADWQGAAAALERAARDWRMAA
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GSTRAPGTRLRWSGPVPDGVERAAWDDALGRLSAAAREALAALDTVSEIAPDFVRLHERC
CCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VELMERLGLFLDPAPPDAVRWLEVGLHQVRACLVPLDIAQPLRRLWFPHEGAAEPSADAA
HHHHHHCCCEECCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCC
TDAAPRAPDDLPWSDEGGDPDPWAAPVPGSALPAPGAAALPGAGSGDAGGRPRAWVFTSA
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEC
TLGDDASLKWFTAACGLEGARVLQVPSPFDYVAQAALYVPRQLPAPSDPGHGAAVARWAG
CCCCCCCCCCEEHHCCCCCCEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCC
DAARVLGGRTLVLTTTLKALRTIGDALRERFPDGSGIEVLVQGDWPKRRLMERFREADAG
HHHHHHCCCEEEHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHCCC
GDRPGCVLVASASFWEGFDVPGDALQLVVIDKLPFPPPGDPVVEARSQRLEQEGKSAFRH
CCCCCEEEEEECCCCCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHH
FALPDAAIALKQGAGRLIRNEQDRGLLAVADARLVTMGYGKRLLAALPPMRRIQDEAEWD
HCCCHHHHHHHHCCCHHHCCCCCCCEEEEECCEEEECCCCHHHHHHCCCHHHHHHHHHHH
EALRGLAAVTRPSTTAPPSP
HHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]