| Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008752 |
| Length | 5,352,772 |
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The map label for this gene is amyB [H]
Identifier: 120611343
GI number: 120611343
Start: 2940586
End: 2943090
Strand: Direct
Name: amyB [H]
Synonym: Aave_2675
Alternate gene names: 120611343
Gene position: 2940586-2943090 (Clockwise)
Preceding gene: 120611342
Following gene: 120611344
Centisome position: 54.94
GC content: 67.27
Gene sequence:
>2505_bases ATGTTTCAAGGAACCCAAGTTACCACTGCGTTTCTGCTGCTGTGTTCGGCCTTGCTCACGGGGTGCGGCGGTGGGCAGGA AAGCGCCAGTGCCGGCTCTTCCGGCGCCCTGGAGGTCGCGTCGAAAAGCACCGCCGCTGCCCCTGCCGCGCAGGCCCGCG TTTTCGTGCACCCCGGCGCGCCGCTCACCCGCGCGGATCTCGATACGCTCAAGTCGTACGTCGAGCAAGGCCGGGAGCCC TGGAAATCCGCCTATGACCTGCTGGCGAAAGACGGCAAGGCCCAGTTGACCTACCGCATGGCAGGCCCGTTCGCGAAAGT CAGCCGCGGCCCCAACGAGAATCTCTGGGCCTGGCGCAACGACATGGTCGCGATCTGGAACCTGTCGCGCATGTGGCACT TCACCCGCAACGAAGACTATGCGCAGAAAGCGCGCGAGATACTGCTGGCATGGGCCACCCGCCAGACCGAGTTCTCGGGG CGCGAATCCATGCTCGACCTGGGCGACTACGCCTATATGTTCGTGGGCGGGGCGGAGATCCTGCGCGGCACGTGGCCGAA CTGGAAGGAGGGCGACACCGCCGCGGTGAAGAAATATTTCCGCGACGTCCTGATTCCGGCGTCGAATCCCTACGGGGAAA ACCAGTTCGGGGCGGCCAACAAGGGGGCGCTGGCCCTCGTTTCCCTCGGGCTGATGGCGATTTTCAACGACGACGCGGAA ACGCTGGACAAGGTCGTCAGCCAGGTCCGCACGCTCGCGCACATCGGGCTTAGAAACTCCAACGACATCGGCATGCTCGG CGATTCCCTGCGGGACCAGGGACATGCCCATGTCCAGCTCCTGTCGCTCACCATGCTCGCCGAGGCGCTCTGGAAGCAGG GCATCGACGTCTATTCCGACCTCGATGGCCGCCTGCTCGCGGCGGGTGAGTATTTCGCGCGGGTGAATGAGCTCGCCCCG ACGGCGGCCCTGCCTTTCGGCACCACGGACCGCTACTACATCGCCGACATCACGGGACACGGCTGGCGCGGCGCCAATGG CGGCAACATCGCGCTCGAGCTGATCCATGCCGCCTACGTGCTGCGCAAGGGCATGCAGGCGCCGTTCATCGCGCAGAGGC GCCGCTGGACGCCGGTGGACGGCAGCAGCTTCATGTTCCTCAAGGACGTCGATACCTCCAGGGCGGCGCCCGCGGCGGCA CTTCCCGTTCCCGCCACCGCCTCGGTCACGTCCGGCTTCGGCAGCGTGGATATCGGTGGCGCCAATCCGCCCGGCACGGC CACCTATGCCAACGGCCGGTGGACCGTCCAGGGGGCGGGTTCCGGCATCTGGGCCGCGAGCGACAGCGGTCACTTCATCT ACAAGGCCCTCGCCGGCGACAGCGCCATCATCGCGAAGGTCGAGTCGATTCAGAACACCGGCCAGGCCGCCAAGGTGGGC GTGATGATGCGCACCAGCCTGGAGGCAGGCGCTCCGCGTGCCTGGATGGCGGTCACCAACAGGAAGCAGGTCGAGCAGAA CATGACGAAGCTCGCCGTGTACGGCGGGACGAACTACTCGAACAAGGCCCACGACCTTCCCGGACCGGCGTCGTCCTACT GGGTGAAGCTCGAGCGCATCGGCAACATGATCACCGGCTACGTGTCTCCCGACGGCACCAACTGGGCCGCGACGGATGTC GGCCGCATCGAGGCCCCGGTGCCCGAGACGATCTACGTGGGCCTGGTCGTTTCCTCGGGCGCCAATGGCACGCTGAACCG ATCCACGTTCAATCACGTCCAGATCACCGGAGGCGACGGCGGCGCACCGGTGGTCGTTCCGGAAGCTCCGGCCCTGCTGC TCGCCTCGCCGGGCGACGGCGCCGTGCCGCTGCGCTGGCAGGCGTCCTTCGGCGCCACGAGCTACGCGGTCAGGCGTGCG ACCTCCAGCAGCGGCCCCTACGAGGTCATCGCGCCGCGCGTCGTGGGCAGCAGCTACACGGACACCTCCGTGAGCAATGG CGTGACCTACCACTACACCGTCACCGCGGCCAATTCCGCGGGCACGAGCGCCAGCTCTCCGGCGGACAGCGCCACGCCGG CGCGCCCGCTGGCGAACATCGCCACCGGAGGAGCCGCGTCGGACAGCGCGGGCAACGCCGCCAACGCCAGGAGCGCCTTC GACCGGAACTCCGCCACGCAATGGTTCCATCCGGGCGCCACCGGCTGGCTGCAGTACGACCTCGGCCGCGTGCAGGCCGT GGAGCGCTACGTGGTGACCAGTTCCAACGACAAGGTCCAACGCGATCCGAAGGACTGGCACTTCCAGGGCTCCAACGACG GAGCGACCTGGACGACCCTGGACACGCGGCGCGGCCAGGCGTTCGCCGAACGCTATGAGGCGAAAACCTACCCGATCGCA CAGCCGGCCGCTTATCGCTATTACCGGCTCGACATCACGGCCAACAACGGGGACGGCGGCTTCACGGATCTTTCGGAACT GGGGTTGCTGGCTTCCGGCAGGTAG
Upstream 100 bases:
>100_bases TAACGATGCCAGAATATGCCCCCTCGCGATCCATGGAAACCTCGATGGAAGTTTGCATGGCTGGGAAACCTGAAAATCCA CACGCATTCACAAGGGCCCC
Downstream 100 bases:
>100_bases TGACGGGGCGGTCACAGCGGCGGCCGGAGCCCGGGAGCGACCGGTGCCGGCCACGCTCCCTAAGTAGATACGATGTATAT TATCTGACGATTACGTCAAC
Product: coagulation factor 5/8 type domain-containing protein
Products: NA
Alternate protein names: Alpha-amylase/pullulanase; Pullulanase type II; Alpha-amylase; 1,4-alpha-D-glucan glucanohydrolase; Pullulanase; 1,4-alpha-D-glucan glucanohydrolase; Alpha-dextrin endo-1,6-alpha-glucosidase [H]
Number of amino acids: Translated: 834; Mature: 834
Protein sequence:
>834_residues MFQGTQVTTAFLLLCSALLTGCGGGQESASAGSSGALEVASKSTAAAPAAQARVFVHPGAPLTRADLDTLKSYVEQGREP WKSAYDLLAKDGKAQLTYRMAGPFAKVSRGPNENLWAWRNDMVAIWNLSRMWHFTRNEDYAQKAREILLAWATRQTEFSG RESMLDLGDYAYMFVGGAEILRGTWPNWKEGDTAAVKKYFRDVLIPASNPYGENQFGAANKGALALVSLGLMAIFNDDAE TLDKVVSQVRTLAHIGLRNSNDIGMLGDSLRDQGHAHVQLLSLTMLAEALWKQGIDVYSDLDGRLLAAGEYFARVNELAP TAALPFGTTDRYYIADITGHGWRGANGGNIALELIHAAYVLRKGMQAPFIAQRRRWTPVDGSSFMFLKDVDTSRAAPAAA LPVPATASVTSGFGSVDIGGANPPGTATYANGRWTVQGAGSGIWAASDSGHFIYKALAGDSAIIAKVESIQNTGQAAKVG VMMRTSLEAGAPRAWMAVTNRKQVEQNMTKLAVYGGTNYSNKAHDLPGPASSYWVKLERIGNMITGYVSPDGTNWAATDV GRIEAPVPETIYVGLVVSSGANGTLNRSTFNHVQITGGDGGAPVVVPEAPALLLASPGDGAVPLRWQASFGATSYAVRRA TSSSGPYEVIAPRVVGSSYTDTSVSNGVTYHYTVTAANSAGTSASSPADSATPARPLANIATGGAASDSAGNAANARSAF DRNSATQWFHPGATGWLQYDLGRVQAVERYVVTSSNDKVQRDPKDWHFQGSNDGATWTTLDTRRGQAFAERYEAKTYPIA QPAAYRYYRLDITANNGDGGFTDLSELGLLASGR
Sequences:
>Translated_834_residues MFQGTQVTTAFLLLCSALLTGCGGGQESASAGSSGALEVASKSTAAAPAAQARVFVHPGAPLTRADLDTLKSYVEQGREP WKSAYDLLAKDGKAQLTYRMAGPFAKVSRGPNENLWAWRNDMVAIWNLSRMWHFTRNEDYAQKAREILLAWATRQTEFSG RESMLDLGDYAYMFVGGAEILRGTWPNWKEGDTAAVKKYFRDVLIPASNPYGENQFGAANKGALALVSLGLMAIFNDDAE TLDKVVSQVRTLAHIGLRNSNDIGMLGDSLRDQGHAHVQLLSLTMLAEALWKQGIDVYSDLDGRLLAAGEYFARVNELAP TAALPFGTTDRYYIADITGHGWRGANGGNIALELIHAAYVLRKGMQAPFIAQRRRWTPVDGSSFMFLKDVDTSRAAPAAA LPVPATASVTSGFGSVDIGGANPPGTATYANGRWTVQGAGSGIWAASDSGHFIYKALAGDSAIIAKVESIQNTGQAAKVG VMMRTSLEAGAPRAWMAVTNRKQVEQNMTKLAVYGGTNYSNKAHDLPGPASSYWVKLERIGNMITGYVSPDGTNWAATDV GRIEAPVPETIYVGLVVSSGANGTLNRSTFNHVQITGGDGGAPVVVPEAPALLLASPGDGAVPLRWQASFGATSYAVRRA TSSSGPYEVIAPRVVGSSYTDTSVSNGVTYHYTVTAANSAGTSASSPADSATPARPLANIATGGAASDSAGNAANARSAF DRNSATQWFHPGATGWLQYDLGRVQAVERYVVTSSNDKVQRDPKDWHFQGSNDGATWTTLDTRRGQAFAERYEAKTYPIA QPAAYRYYRLDITANNGDGGFTDLSELGLLASGR >Mature_834_residues MFQGTQVTTAFLLLCSALLTGCGGGQESASAGSSGALEVASKSTAAAPAAQARVFVHPGAPLTRADLDTLKSYVEQGREP WKSAYDLLAKDGKAQLTYRMAGPFAKVSRGPNENLWAWRNDMVAIWNLSRMWHFTRNEDYAQKAREILLAWATRQTEFSG RESMLDLGDYAYMFVGGAEILRGTWPNWKEGDTAAVKKYFRDVLIPASNPYGENQFGAANKGALALVSLGLMAIFNDDAE TLDKVVSQVRTLAHIGLRNSNDIGMLGDSLRDQGHAHVQLLSLTMLAEALWKQGIDVYSDLDGRLLAAGEYFARVNELAP TAALPFGTTDRYYIADITGHGWRGANGGNIALELIHAAYVLRKGMQAPFIAQRRRWTPVDGSSFMFLKDVDTSRAAPAAA LPVPATASVTSGFGSVDIGGANPPGTATYANGRWTVQGAGSGIWAASDSGHFIYKALAGDSAIIAKVESIQNTGQAAKVG VMMRTSLEAGAPRAWMAVTNRKQVEQNMTKLAVYGGTNYSNKAHDLPGPASSYWVKLERIGNMITGYVSPDGTNWAATDV GRIEAPVPETIYVGLVVSSGANGTLNRSTFNHVQITGGDGGAPVVVPEAPALLLASPGDGAVPLRWQASFGATSYAVRRA TSSSGPYEVIAPRVVGSSYTDTSVSNGVTYHYTVTAANSAGTSASSPADSATPARPLANIATGGAASDSAGNAANARSAF DRNSATQWFHPGATGWLQYDLGRVQAVERYVVTSSNDKVQRDPKDWHFQGSNDGATWTTLDTRRGQAFAERYEAKTYPIA QPAAYRYYRLDITANNGDGGFTDLSELGLLASGR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Secreted, cell wall. Note=It C-terminus may serve as an S-layer anchor [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 3 SLH (S-layer homology) domains [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006048 - InterPro: IPR013784 - InterPro: IPR008957 - InterPro: IPR003961 - InterPro: IPR013780 - InterPro: IPR006047 - InterPro: IPR004185 - InterPro: IPR006589 - InterPro: IPR002044 - InterPro: IPR017853 - InterPro: IPR013781 - InterPro: IPR013783 - InterPro: IPR014756 - InterPro: IPR001119 [H]
Pfam domain/function: PF00128 Alpha-amylase; PF02903 Alpha-amylase_N; PF00395 SLH [H]
EC number: =3.2.1.1; =3.2.1.41 [H]
Molecular weight: Translated: 88746; Mature: 88746
Theoretical pI: Translated: 7.46; Mature: 7.46
Prosite motif: PS50022 FA58C_3 ; PS50853 FN3 ; PS00138 SUBTILASE_SER
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFQGTQVTTAFLLLCSALLTGCGGGQESASAGSSGALEVASKSTAAAPAAQARVFVHPGA CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCEEEEECCCC PLTRADLDTLKSYVEQGREPWKSAYDLLAKDGKAQLTYRMAGPFAKVSRGPNENLWAWRN CCCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEEECCCHHHHCCCCCCCEEEECC DMVAIWNLSRMWHFTRNEDYAQKAREILLAWATRQTEFSGRESMLDLGDYAYMFVGGAEI CEEEEEEHHHHEEECCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEECCHHH LRGTWPNWKEGDTAAVKKYFRDVLIPASNPYGENQFGAANKGALALVSLGLMAIFNDDAE HHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCCEEECCCHH TLDKVVSQVRTLAHIGLRNSNDIGMLGDSLRDQGHAHVQLLSLTMLAEALWKQGIDVYSD HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCEEHHHHHHHHHHHHHHCCCCHHCC LDGRLLAAGEYFARVNELAPTAALPFGTTDRYYIADITGHGWRGANGGNIALELIHAAYV CCCCEEECHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHH LRKGMQAPFIAQRRRWTPVDGSSFMFLKDVDTSRAAPAAALPVPATASVTSGFGSVDIGG HHCCCCCCHHHHCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHCCCCCEECCC ANPPGTATYANGRWTVQGAGSGIWAASDSGHFIYKALAGDSAIIAKVESIQNTGQAAKVG CCCCCCCEEECCEEEEEECCCEEEEECCCCCEEEEEECCCCCEEHHHHHHHCCCCHHEEE VMMRTSLEAGAPRAWMAVTNRKQVEQNMTKLAVYGGTNYSNKAHDLPGPASSYWVKLERI EEEEECCCCCCCEEEEECCCHHHHHHCCEEEEEECCCCCCCCCCCCCCCCHHHEEEHHHH GNMITGYVSPDGTNWAATDVGRIEAPVPETIYVGLVVSSGANGTLNRSTFNHVQITGGDG CCEEEEEECCCCCCEEECCCCCCCCCCCCEEEEEEEEECCCCCCEECCCCCEEEEECCCC GAPVVVPEAPALLLASPGDGAVPLRWQASFGATSYAVRRATSSSGPYEVIAPRVVGSSYT CCEEEECCCCEEEEECCCCCCEEEEEECCCCCHHHHHHHCCCCCCCEEEEECEECCCCCC DTSVSNGVTYHYTVTAANSAGTSASSPADSATPARPLANIATGGAASDSAGNAANARSAF CCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCHHHHH DRNSATQWFHPGATGWLQYDLGRVQAVERYVVTSSNDKVQRDPKDWHFQGSNDGATWTTL CCCCCCCEECCCCCCEEEEHHHHHHHHHEEEEECCCCCCCCCCCCCEEECCCCCCEEEEE DTRRGQAFAERYEAKTYPIAQPAAYRYYRLDITANNGDGGFTDLSELGLLASGR CCCCCHHHHHHHCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCHHHHCCCCCCC >Mature Secondary Structure MFQGTQVTTAFLLLCSALLTGCGGGQESASAGSSGALEVASKSTAAAPAAQARVFVHPGA CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCEEEEECCCC PLTRADLDTLKSYVEQGREPWKSAYDLLAKDGKAQLTYRMAGPFAKVSRGPNENLWAWRN CCCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEEECCCHHHHCCCCCCCEEEECC DMVAIWNLSRMWHFTRNEDYAQKAREILLAWATRQTEFSGRESMLDLGDYAYMFVGGAEI CEEEEEEHHHHEEECCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEECCHHH LRGTWPNWKEGDTAAVKKYFRDVLIPASNPYGENQFGAANKGALALVSLGLMAIFNDDAE HHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCCEEECCCHH TLDKVVSQVRTLAHIGLRNSNDIGMLGDSLRDQGHAHVQLLSLTMLAEALWKQGIDVYSD HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCEEHHHHHHHHHHHHHHCCCCHHCC LDGRLLAAGEYFARVNELAPTAALPFGTTDRYYIADITGHGWRGANGGNIALELIHAAYV CCCCEEECHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHH LRKGMQAPFIAQRRRWTPVDGSSFMFLKDVDTSRAAPAAALPVPATASVTSGFGSVDIGG HHCCCCCCHHHHCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHCCCCCEECCC ANPPGTATYANGRWTVQGAGSGIWAASDSGHFIYKALAGDSAIIAKVESIQNTGQAAKVG CCCCCCCEEECCEEEEEECCCEEEEECCCCCEEEEEECCCCCEEHHHHHHHCCCCHHEEE VMMRTSLEAGAPRAWMAVTNRKQVEQNMTKLAVYGGTNYSNKAHDLPGPASSYWVKLERI EEEEECCCCCCCEEEEECCCHHHHHHCCEEEEEECCCCCCCCCCCCCCCCHHHEEEHHHH GNMITGYVSPDGTNWAATDVGRIEAPVPETIYVGLVVSSGANGTLNRSTFNHVQITGGDG CCEEEEEECCCCCCEEECCCCCCCCCCCCEEEEEEEEECCCCCCEECCCCCEEEEECCCC GAPVVVPEAPALLLASPGDGAVPLRWQASFGATSYAVRRATSSSGPYEVIAPRVVGSSYT CCEEEECCCCEEEEECCCCCCEEEEEECCCCCHHHHHHHCCCCCCCEEEEECEECCCCCC DTSVSNGVTYHYTVTAANSAGTSASSPADSATPARPLANIATGGAASDSAGNAANARSAF CCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCHHHHH DRNSATQWFHPGATGWLQYDLGRVQAVERYVVTSSNDKVQRDPKDWHFQGSNDGATWTTL CCCCCCCEECCCCCCEEEEHHHHHHHHHEEEEECCCCCCCCCCCCCEEECCCCCCEEEEE DTRRGQAFAERYEAKTYPIAQPAAYRYYRLDITANNGDGGFTDLSELGLLASGR CCCCCHHHHHHHCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8195085 [H]