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The map label for this gene is ydaS [H]

Identifier: 120611008

GI number: 120611008

Start: 2563204

End: 2563464

Strand: Direct

Name: ydaS [H]

Synonym: Aave_2336

Alternate gene names: 120611008

Gene position: 2563204-2563464 (Clockwise)

Preceding gene: 120610996

Following gene: 120611009

Centisome position: 47.89

GC content: 67.43

Gene sequence:

>261_bases
ATGAACGCGATTCAACGAGCGATCCAAGGGGCGGGCGGCCCCGCAAAGGTGGCCCACGAGCTGCGGTGCACGGTGCAGGC
CGTGTGCTTCTGGCGCGATGGGAAGCGCCAGCTACCGGCCGAGCACTGCCCCGTGCTCGAACGCCTCAACGATGGGGCAG
TGCGCTGTGAAGACCTGCGCCCGGACGTGGACTGGGCCTACATCAGATCGTCTGCAGCGGAGCCAGCAGCGCCACCGGCT
GGGGAGGTGGTTCATGCCTAA

Upstream 100 bases:

>100_bases
GATGCGTGCGCCGAGTGCCATACCCGAAGACTAAACAAATGTAGAACCAGCGCCAGATACATTCGTTGAAATTGCACATC
TACACATGTAGAATTCGCGC

Downstream 100 bases:

>100_bases
CCGGAACCACGTTCCTCAATTCGCACGCGGCATTTCCGGGCCACTCGGAAAGCTCGAGAACGACCTGAAGACGAAGGTCG
ATGAGCACACGCATGCGCTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 86; Mature: 86

Protein sequence:

>86_residues
MNAIQRAIQGAGGPAKVAHELRCTVQAVCFWRDGKRQLPAEHCPVLERLNDGAVRCEDLRPDVDWAYIRSSAAEPAAPPA
GEVVHA

Sequences:

>Translated_86_residues
MNAIQRAIQGAGGPAKVAHELRCTVQAVCFWRDGKRQLPAEHCPVLERLNDGAVRCEDLRPDVDWAYIRSSAAEPAAPPA
GEVVHA
>Mature_86_residues
MNAIQRAIQGAGGPAKVAHELRCTVQAVCFWRDGKRQLPAEHCPVLERLNDGAVRCEDLRPDVDWAYIRSSAAEPAAPPA
GEVVHA

Specific function: Unknown

COG id: COG4197

COG function: function code S; Uncharacterized protein conserved in bacteria, prophage-related

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787620, Length=70, Percent_Identity=45.7142857142857, Blast_Score=66, Evalue=4e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001387
- InterPro:   IPR010982 [H]

Pfam domain/function: PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 9315; Mature: 9315

Theoretical pI: Translated: 6.76; Mature: 6.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.7 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
4.7 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNAIQRAIQGAGGPAKVAHELRCTVQAVCFWRDGKRQLPAEHCPVLERLNDGAVRCEDLR
CCHHHHHHHCCCCHHHHHHHHHHHHHHHEEECCCCCCCCHHCCHHHHHCCCCCEEECCCC
PDVDWAYIRSSAAEPAAPPAGEVVHA
CCCCHHHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MNAIQRAIQGAGGPAKVAHELRCTVQAVCFWRDGKRQLPAEHCPVLERLNDGAVRCEDLR
CCHHHHHHHCCCCHHHHHHHHHHHHHHHEEECCCCCCCCHHCCHHHHHCCCCCEEECCCC
PDVDWAYIRSSAAEPAAPPAGEVVHA
CCCCHHHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]