| Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008752 |
| Length | 5,352,772 |
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The map label for this gene is smvA [H]
Identifier: 120610832
GI number: 120610832
Start: 2369831
End: 2371372
Strand: Direct
Name: smvA [H]
Synonym: Aave_2158
Alternate gene names: 120610832
Gene position: 2369831-2371372 (Clockwise)
Preceding gene: 120610829
Following gene: 120610838
Centisome position: 44.27
GC content: 72.63
Gene sequence:
>1542_bases ATGTCCTTGCTTACTTCTCCTGCTTCGTCCCCGATGCAGCGGTGGCTCGTCCTGGCGGCGGTGATGCTGGCCTTCCTGCC GGTGGTGATCGACATGACGATCCTCCACATCGCCGTCCCGTCGCTGACGCTGGCGTTGAGCGCATCGGGCACCCAGGTGC TCTGGATCATCGACATCTATCCGCTGCTCATGGCGGGCCTGCTGGTGCCCATGGGAACGCTGGCGGACCGCACCGGTCAC CGGCGGCTGCTGCTCGCCGGCCTGGCGGTCTTCGGCCTCGCATCGCTGCTGGCGGCATTCGCTCCCAGCCCGGCGATGCT GATCGCGGCGCGCGTGCTGCTCGCGCTGGGCGGCTCGATGATCATGCCGTGCGTGCTCGGCATCATCCGCCGCACGTTCG AGGATGAACGGGAGCGCGCCATGGCGCTGGGCCTCTGGGGCACCGTGGGCGCGGCGGGGGCTGCCGTGGGGCCGCTGGTC GGCGGGGCGCTGCTGGAGCATTTCTGGTGGGGTGCCGCGTTCCTCATCAACGTGCCGGTGATGCTGGTCGTGTTCCCGGC CGTGTTCCTGCTGCTGCCGCGGTCGGAGCGCACAGCGGCCGGCCGGTGGCCTGCCGGGCAGGCACTGCTGCTGATCGCCG GCATGATCGCCGCGGTGTACGGCCTCAAGTCGGGATTCGGGGGCGGGCAGCCGCCGGCCGTGGCGGCATCGGCGCTGGCG GCGGGAGCGGCCCTGCTGGCGGTGTTCGCGCGTCTGCAACTGCGCTCGCCGACGCCGATGCTGGACCTGTCGCTGTTCTC GCGCCCTGCGATCCTTGCAGGCATCGCCATGGCGGTGGTCGCCACCGGCGCCCTGGCCGGGGTGGAGCTGACACTGGCGC AGGAGCTGCAATACGTGCTGGGCAAGAGCCCGCTGCAGGCCGGCATCTTCATGGTGCCGATCATGGCCGCGGCAGCCGTG GGCGGCCCCCTGGCCGGAACCCTGTCGAACCGCTTCGGACTGCGCCGGGTCGCCAGCCTGTCCCTGGCGGTGTCCGGCGC GGCCCTGGCCTACCTGGCCCGGGCGGACTTCCACGAGGGCGGCGTGCCCGTGGCCGCGGCACTGGCGCTGCTCGGTCTGG CGCTGAGCGTTGGGCTGACGGCGTCGTCCATCGCGATCATGGGGTCGGTCGAGGCGGACAGGGCCGGCGCGGCCGGGGCG CTGGAGGCCACCGGCTACGAGCTGGGCAGCGGCCTGGGCATCACCCTGTTCGGGGTGTTCATGTCCGTCGTGTTCAGCCA TGCGATCGCGCTGCCGCCGGATCTCGCGCCGCCGCTCGCCGTCCAGGCGGCCCGGTCGATCGGCGATGCCTACGTGGTCG CGCAGCAACTGGCGGAGGGGCCGGCGGCCGCGCTGATCGGGGCCGGGCAGGCAGCCTTCTCGGTCGCCCATCGGGTGCTG CTGAACACCTCCGCGGCGCTGATCGGCCTGCTGGCCGTGGCCGTGTTCATCCTGCTGGCCGGCTACCGTGGCGGGCCGGG AGCTGCGGCGGGCGGGCACTGA
Upstream 100 bases:
>100_bases CGTTTCGGACGGCATTGTGCCCCGGAATCCGAAGGCTTTCAGTTGAAATAAATACGTATGTATTTATATTCCGCGGCATT GTGTTTCATCCGGGTGGTGC
Downstream 100 bases:
>100_bases GGCGCCGCACCCGTCGGAGCACGTGGCCGCTGCGGAAAGGGTGGGCGCGGCGCTCCCGCGCTCAACCCGGCCGGCCGTCC AGGCGCGGGCGGGAGAGGGC
Product: major facilitator superfamily transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 513; Mature: 512
Protein sequence:
>513_residues MSLLTSPASSPMQRWLVLAAVMLAFLPVVIDMTILHIAVPSLTLALSASGTQVLWIIDIYPLLMAGLLVPMGTLADRTGH RRLLLAGLAVFGLASLLAAFAPSPAMLIAARVLLALGGSMIMPCVLGIIRRTFEDERERAMALGLWGTVGAAGAAVGPLV GGALLEHFWWGAAFLINVPVMLVVFPAVFLLLPRSERTAAGRWPAGQALLLIAGMIAAVYGLKSGFGGGQPPAVAASALA AGAALLAVFARLQLRSPTPMLDLSLFSRPAILAGIAMAVVATGALAGVELTLAQELQYVLGKSPLQAGIFMVPIMAAAAV GGPLAGTLSNRFGLRRVASLSLAVSGAALAYLARADFHEGGVPVAAALALLGLALSVGLTASSIAIMGSVEADRAGAAGA LEATGYELGSGLGITLFGVFMSVVFSHAIALPPDLAPPLAVQAARSIGDAYVVAQQLAEGPAAALIGAGQAAFSVAHRVL LNTSAALIGLLAVAVFILLAGYRGGPGAAAGGH
Sequences:
>Translated_513_residues MSLLTSPASSPMQRWLVLAAVMLAFLPVVIDMTILHIAVPSLTLALSASGTQVLWIIDIYPLLMAGLLVPMGTLADRTGH RRLLLAGLAVFGLASLLAAFAPSPAMLIAARVLLALGGSMIMPCVLGIIRRTFEDERERAMALGLWGTVGAAGAAVGPLV GGALLEHFWWGAAFLINVPVMLVVFPAVFLLLPRSERTAAGRWPAGQALLLIAGMIAAVYGLKSGFGGGQPPAVAASALA AGAALLAVFARLQLRSPTPMLDLSLFSRPAILAGIAMAVVATGALAGVELTLAQELQYVLGKSPLQAGIFMVPIMAAAAV GGPLAGTLSNRFGLRRVASLSLAVSGAALAYLARADFHEGGVPVAAALALLGLALSVGLTASSIAIMGSVEADRAGAAGA LEATGYELGSGLGITLFGVFMSVVFSHAIALPPDLAPPLAVQAARSIGDAYVVAQQLAEGPAAALIGAGQAAFSVAHRVL LNTSAALIGLLAVAVFILLAGYRGGPGAAAGGH >Mature_512_residues SLLTSPASSPMQRWLVLAAVMLAFLPVVIDMTILHIAVPSLTLALSASGTQVLWIIDIYPLLMAGLLVPMGTLADRTGHR RLLLAGLAVFGLASLLAAFAPSPAMLIAARVLLALGGSMIMPCVLGIIRRTFEDERERAMALGLWGTVGAAGAAVGPLVG GALLEHFWWGAAFLINVPVMLVVFPAVFLLLPRSERTAAGRWPAGQALLLIAGMIAAVYGLKSGFGGGQPPAVAASALAA GAALLAVFARLQLRSPTPMLDLSLFSRPAILAGIAMAVVATGALAGVELTLAQELQYVLGKSPLQAGIFMVPIMAAAAVG GPLAGTLSNRFGLRRVASLSLAVSGAALAYLARADFHEGGVPVAAALALLGLALSVGLTASSIAIMGSVEADRAGAAGAL EATGYELGSGLGITLFGVFMSVVFSHAIALPPDLAPPLAVQAARSIGDAYVVAQQLAEGPAAALIGAGQAAFSVAHRVLL NTSAALIGLLAVAVFILLAGYRGGPGAAAGGH
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily. TCR/tet family [H]
Homologues:
Organism=Escherichia coli, GI87081983, Length=415, Percent_Identity=27.4698795180723, Blast_Score=121, Evalue=1e-28, Organism=Escherichia coli, GI1788710, Length=457, Percent_Identity=25.8205689277899, Blast_Score=102, Evalue=9e-23, Organism=Escherichia coli, GI1788392, Length=437, Percent_Identity=27.2311212814645, Blast_Score=86, Evalue=8e-18, Organism=Escherichia coli, GI1789042, Length=405, Percent_Identity=24.4444444444444, Blast_Score=85, Evalue=9e-18, Organism=Escherichia coli, GI1790195, Length=393, Percent_Identity=25.1908396946565, Blast_Score=85, Evalue=1e-17, Organism=Escherichia coli, GI1790146, Length=163, Percent_Identity=27.6073619631902, Blast_Score=63, Evalue=6e-11, Organism=Saccharomyces cerevisiae, GI6322958, Length=514, Percent_Identity=23.5408560311284, Blast_Score=71, Evalue=4e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020846 - InterPro: IPR011701 - InterPro: IPR016196 - InterPro: IPR001411 [H]
Pfam domain/function: PF07690 MFS_1 [H]
EC number: NA
Molecular weight: Translated: 51629; Mature: 51498
Theoretical pI: Translated: 9.69; Mature: 9.69
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLLTSPASSPMQRWLVLAAVMLAFLPVVIDMTILHIAVPSLTLALSASGTQVLWIIDIY CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCEEEEHHHHH PLLMAGLLVPMGTLADRTGHRRLLLAGLAVFGLASLLAAFAPSPAMLIAARVLLALGGSM HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHH IMPCVLGIIRRTFEDERERAMALGLWGTVGAAGAAVGPLVGGALLEHFWWGAAFLINVPV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MLVVFPAVFLLLPRSERTAAGRWPAGQALLLIAGMIAAVYGLKSGFGGGQPPAVAASALA HHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH AGAALLAVFARLQLRSPTPMLDLSLFSRPAILAGIAMAVVATGALAGVELTLAQELQYVL HHHHHHHHHHHHHCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GKSPLQAGIFMVPIMAAAAVGGPLAGTLSNRFGLRRVASLSLAVSGAALAYLARADFHEG CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC GVPVAAALALLGLALSVGLTASSIAIMGSVEADRAGAAGALEATGYELGSGLGITLFGVF CCCHHHHHHHHHHHHHHCCCHHHHHEEECCCCCCCCCCCCCHHCCHHHCCCCHHHHHHHH MSVVFSHAIALPPDLAPPLAVQAARSIGDAYVVAQQLAEGPAAALIGAGQAAFSVAHRVL HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHH LNTSAALIGLLAVAVFILLAGYRGGPGAAAGGH HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC >Mature Secondary Structure SLLTSPASSPMQRWLVLAAVMLAFLPVVIDMTILHIAVPSLTLALSASGTQVLWIIDIY CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCEEEEHHHHH PLLMAGLLVPMGTLADRTGHRRLLLAGLAVFGLASLLAAFAPSPAMLIAARVLLALGGSM HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHH IMPCVLGIIRRTFEDERERAMALGLWGTVGAAGAAVGPLVGGALLEHFWWGAAFLINVPV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MLVVFPAVFLLLPRSERTAAGRWPAGQALLLIAGMIAAVYGLKSGFGGGQPPAVAASALA HHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH AGAALLAVFARLQLRSPTPMLDLSLFSRPAILAGIAMAVVATGALAGVELTLAQELQYVL HHHHHHHHHHHHHCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GKSPLQAGIFMVPIMAAAAVGGPLAGTLSNRFGLRRVASLSLAVSGAALAYLARADFHEG CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC GVPVAAALALLGLALSVGLTASSIAIMGSVEADRAGAAGALEATGYELGSGLGITLFGVF CCCHHHHHHHHHHHHHHCCCHHHHHEEECCCCCCCCCCCCCHHCCHHHCCCCHHHHHHHH MSVVFSHAIALPPDLAPPLAVQAARSIGDAYVVAQQLAEGPAAALIGAGQAAFSVAHRVL HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHH LNTSAALIGLLAVAVFILLAGYRGGPGAAAGGH HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7926834; 11677609 [H]