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The map label for this gene is nodB [H]

Identifier: 120610125

GI number: 120610125

Start: 1585059

End: 1585895

Strand: Direct

Name: nodB [H]

Synonym: Aave_1438

Alternate gene names: 120610125

Gene position: 1585059-1585895 (Clockwise)

Preceding gene: 120610124

Following gene: 120610126

Centisome position: 29.61

GC content: 66.55

Gene sequence:

>837_bases
ATGCTCCCCGGTAAGGCCAGGATGCCACGAGCAGGCCAAGTGAGCCGCGCGGGCTTGATCTGTGCGGTGGTCTTGTCCCT
GGTGCCGCCTGCGGGCGCGGCGGGTGCTGCATGCGACAAGCCGGTCTATCTGACTCTGGACACGGGTCACATGGGCGTCG
CCCCCCTCATCGCCGATGTGTTGAAGCGCCAGCATGTGCTCGTGACTTTTTTTGCTGCGAACGAGAAGACGCAGGAAGGC
GACGGCAGCCTGGGCAATTTCTGGGCGGGCTGGTGGAAGGCTCGCGCGGCAGAGGGCCATGCTTTTGCATCCCATACCTA
CGACCACGTCTATTGGCGTGCGGATGCCGGTCCTGCGGAATCTCCGAGCTTCCGGGTGCGGCCATCGGCCGGCCCGCGGG
CGGGCCAGGAGTTCACTGTCACGGCACAGCAGTACTGCGCCGAAATCGCCAGATCCGAAGCACGTCTGAAAGAGATCACC
GGGCAACCACCGTTGCCGCTGTTCCGGGCACCGGGTGGAAAAACCTCCGCCCGCCTGCTGGAGGCCGCAAAACGCTGTGG
CTACGCCCATGTGGGGTGGTCTCCCGCCGGCTTCCTGGGCGATGAGCTTCCGAGCGAGCGCTACAGCAATCCGGCGCTGC
TCCGGCAGGCTCTGGAGCGCATCCGGCCGGGCGACATCCTGCTGGCGCACCTGGGCATCTGGTCGCGCAAGGACCCGTGG
GCGCCCGCTGTGCTCGAGCCCCTGATCGAGGGGCTGAAGTCCCGTGGATTCTGTTTCCGCACGCTGCGGGACCATCCCGG
GTACCAGGGCTGGATTGCCGCTCATCCCGTGCGGTGA

Upstream 100 bases:

>100_bases
CGTTGGGCAAAGAAGATGCTGGTCATCGATACCGTGGAGCGCAAGGTGGTGCAGCGCATCAACGTGGGCAAGTCTCCGCA
CGGTGTGTGGACGCTCCAGC

Downstream 100 bases:

>100_bases
GCGGAACCTGGGCGATCAGGGCGGATCGGAGCGGGGGCTATGGACGGGCTCAGTCAAGTATTCGATATGGCGCAGCAATG
GCTGTTCGAGACCATCGTGC

Product: polysaccharide deacetylase

Products: NA

Alternate protein names: Nodulation protein B [H]

Number of amino acids: Translated: 278; Mature: 278

Protein sequence:

>278_residues
MLPGKARMPRAGQVSRAGLICAVVLSLVPPAGAAGAACDKPVYLTLDTGHMGVAPLIADVLKRQHVLVTFFAANEKTQEG
DGSLGNFWAGWWKARAAEGHAFASHTYDHVYWRADAGPAESPSFRVRPSAGPRAGQEFTVTAQQYCAEIARSEARLKEIT
GQPPLPLFRAPGGKTSARLLEAAKRCGYAHVGWSPAGFLGDELPSERYSNPALLRQALERIRPGDILLAHLGIWSRKDPW
APAVLEPLIEGLKSRGFCFRTLRDHPGYQGWIAAHPVR

Sequences:

>Translated_278_residues
MLPGKARMPRAGQVSRAGLICAVVLSLVPPAGAAGAACDKPVYLTLDTGHMGVAPLIADVLKRQHVLVTFFAANEKTQEG
DGSLGNFWAGWWKARAAEGHAFASHTYDHVYWRADAGPAESPSFRVRPSAGPRAGQEFTVTAQQYCAEIARSEARLKEIT
GQPPLPLFRAPGGKTSARLLEAAKRCGYAHVGWSPAGFLGDELPSERYSNPALLRQALERIRPGDILLAHLGIWSRKDPW
APAVLEPLIEGLKSRGFCFRTLRDHPGYQGWIAAHPVR
>Mature_278_residues
MLPGKARMPRAGQVSRAGLICAVVLSLVPPAGAAGAACDKPVYLTLDTGHMGVAPLIADVLKRQHVLVTFFAANEKTQEG
DGSLGNFWAGWWKARAAEGHAFASHTYDHVYWRADAGPAESPSFRVRPSAGPRAGQEFTVTAQQYCAEIARSEARLKEIT
GQPPLPLFRAPGGKTSARLLEAAKRCGYAHVGWSPAGFLGDELPSERYSNPALLRQALERIRPGDILLAHLGIWSRKDPW
APAVLEPLIEGLKSRGFCFRTLRDHPGYQGWIAAHPVR

Specific function: Is involved in generating a small heat-stable compound (Nod), an acylated oligomer of N-acetylglucosamine, that stimulates mitosis in various plant protoplasts [H]

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide deacetylase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011330
- InterPro:   IPR002509 [H]

Pfam domain/function: PF01522 Polysacc_deac_1 [H]

EC number: NA

Molecular weight: Translated: 30130; Mature: 30130

Theoretical pI: Translated: 9.80; Mature: 9.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLPGKARMPRAGQVSRAGLICAVVLSLVPPAGAAGAACDKPVYLTLDTGHMGVAPLIADV
CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHH
LKRQHVLVTFFAANEKTQEGDGSLGNFWAGWWKARAAEGHAFASHTYDHVYWRADAGPAE
HCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHCCCCEEEEECCCCCCC
SPSFRVRPSAGPRAGQEFTVTAQQYCAEIARSEARLKEITGQPPLPLFRAPGGKTSARLL
CCCEEECCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCHHHHHH
EAAKRCGYAHVGWSPAGFLGDELPSERYSNPALLRQALERIRPGDILLAHLGIWSRKDPW
HHHHHCCCEECCCCCCCCCCCCCCHHHCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCC
APAVLEPLIEGLKSRGFCFRTLRDHPGYQGWIAAHPVR
CHHHHHHHHHHHHCCCEEEEHHHCCCCCCCEEECCCCC
>Mature Secondary Structure
MLPGKARMPRAGQVSRAGLICAVVLSLVPPAGAAGAACDKPVYLTLDTGHMGVAPLIADV
CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHH
LKRQHVLVTFFAANEKTQEGDGSLGNFWAGWWKARAAEGHAFASHTYDHVYWRADAGPAE
HCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHCCCCEEEEECCCCCCC
SPSFRVRPSAGPRAGQEFTVTAQQYCAEIARSEARLKEITGQPPLPLFRAPGGKTSARLL
CCCEEECCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCHHHHHH
EAAKRCGYAHVGWSPAGFLGDELPSERYSNPALLRQALERIRPGDILLAHLGIWSRKDPW
HHHHHCCCEECCCCCCCCCCCCCCHHHCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCC
APAVLEPLIEGLKSRGFCFRTLRDHPGYQGWIAAHPVR
CHHHHHHHHHHHHCCCEEEEHHHCCCCCCCEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2615763 [H]