Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
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Accession | NC_008752 |
Length | 5,352,772 |
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The map label for this gene is ycgF [H]
Identifier: 120610095
GI number: 120610095
Start: 1546232
End: 1547230
Strand: Direct
Name: ycgF [H]
Synonym: Aave_1408
Alternate gene names: 120610095
Gene position: 1546232-1547230 (Clockwise)
Preceding gene: 120610091
Following gene: 120610101
Centisome position: 28.89
GC content: 71.57
Gene sequence:
>999_bases TTGCTGCGGCCCCGGCGCGCGCACGGGCGCGTGGCTGCACTAAGCTTTCTTCTGGCAACTTCCGGGAACGCTCCCCTGAC TTCCATGCACGCGCCAGCCCCTTCCGCTCCCGCCTGCTCCGCGTGCCGCAACGGCGCTGCGGAACTGGATTTCGACTTCA CCATGGCTTTCCAGCCCATCGTGGACCTGCGCCATGGTGGCAGCGTGTTCGCCTACGAGGCGCTGGTGCGCGGCACGGAC GGCAGCCCGGCTGCTTCGGTGCTGGCCCGCGTGAACGACGGCAACCGCTATGCATTCGACCAGGCCTGCCGGGTGCGGGC GGTGGAGCTGGCCGCCCGGCTGGGCATCGACTGCCGGTTGAGCATCAACTTCCTGCCCAACGCGGTGTACCAGCCGGAGG CCTGCATCCGGGTCACCCTCGAGGCCGCGCGACGCTGCGGATTTCCGGTCGAGCGCATCATCTTCGAGGTGGCGGAGCAC GAGAACGCCCATGACCGCGAACACCTCAACCGCATCCTGCGCGCCTACCGGCGCCAGGGCCTGCGAACGGCCATCGACGA TTTCGGTGCCGGCTATGCGGGGCTGGGGCTGCTGGCGGACTTCCAGCCCGACATGCTGAAGATCGACATGGCGCTGGTGC GCGGCATCGGCGCCGACCCGGTACGCCAGGCGATTGCCCGCGGCGTGGTCTCGATGGGCGAGGCGCTGGGCATCGCGGTG ATCGCCGAGGGCGTGGAAACCGAGGACGAGCTCCGTCCCCTGCGGGCCATGGGCGTCCACTTGTACCAGGGCTATCTCTT CGCGCGCCCGGCGCTGGAAGCGCTGCCGGACGTGCAATGGCCCCAGGGCGCGGGCTTCGGGACGGGCCCCGGCGATGCCG CGGAGGCGCTGCCTGGCGGTGCGGGGGGCACTGGCGCGCCACCGGCAGCGCTGCGCGCGATGCCCGGTGCGCGGGCACGC GGCGGCGCGGGCATGTCGCTGGGATTCGGGCCCGGCTGA
Upstream 100 bases:
>100_bases CGGTAGCTGAAAATCGCTACCGTGTGTGGCGCAAGCCACTTCGGTGCCGCGAAGTGTGGTGAGCGGCAGCCGCGCGGGCT TTTGCGTAGGACGCCACCGC
Downstream 100 bases:
>100_bases GCCCACCCGTCACTGGTTGGAGATGATGGTGAGCAGGTCGCCCCGCACATCGGGGTTGTCGGTGTACTTCTTGTAGAGCG GCGCCATGCGGCGCACGTAG
Product: diguanylate phosphodiesterase
Products: NA
Alternate protein names: Blrp [H]
Number of amino acids: Translated: 332; Mature: 332
Protein sequence:
>332_residues MLRPRRAHGRVAALSFLLATSGNAPLTSMHAPAPSAPACSACRNGAAELDFDFTMAFQPIVDLRHGGSVFAYEALVRGTD GSPAASVLARVNDGNRYAFDQACRVRAVELAARLGIDCRLSINFLPNAVYQPEACIRVTLEAARRCGFPVERIIFEVAEH ENAHDREHLNRILRAYRRQGLRTAIDDFGAGYAGLGLLADFQPDMLKIDMALVRGIGADPVRQAIARGVVSMGEALGIAV IAEGVETEDELRPLRAMGVHLYQGYLFARPALEALPDVQWPQGAGFGTGPGDAAEALPGGAGGTGAPPAALRAMPGARAR GGAGMSLGFGPG
Sequences:
>Translated_332_residues MLRPRRAHGRVAALSFLLATSGNAPLTSMHAPAPSAPACSACRNGAAELDFDFTMAFQPIVDLRHGGSVFAYEALVRGTD GSPAASVLARVNDGNRYAFDQACRVRAVELAARLGIDCRLSINFLPNAVYQPEACIRVTLEAARRCGFPVERIIFEVAEH ENAHDREHLNRILRAYRRQGLRTAIDDFGAGYAGLGLLADFQPDMLKIDMALVRGIGADPVRQAIARGVVSMGEALGIAV IAEGVETEDELRPLRAMGVHLYQGYLFARPALEALPDVQWPQGAGFGTGPGDAAEALPGGAGGTGAPPAALRAMPGARAR GGAGMSLGFGPG >Mature_332_residues MLRPRRAHGRVAALSFLLATSGNAPLTSMHAPAPSAPACSACRNGAAELDFDFTMAFQPIVDLRHGGSVFAYEALVRGTD GSPAASVLARVNDGNRYAFDQACRVRAVELAARLGIDCRLSINFLPNAVYQPEACIRVTLEAARRCGFPVERIIFEVAEH ENAHDREHLNRILRAYRRQGLRTAIDDFGAGYAGLGLLADFQPDMLKIDMALVRGIGADPVRQAIARGVVSMGEALGIAV IAEGVETEDELRPLRAMGVHLYQGYLFARPALEALPDVQWPQGAGFGTGPGDAAEALPGGAGGTGAPPAALRAMPGARAR GGAGMSLGFGPG
Specific function: Binds to and releases the YcgE repressor from its bound DNA target in a blue-light-dependent (470 nm) fashion. A shift to low temperature also triggers a YcgF-medisted relief of repression by YcgE, suggesting YcgF may serve as a thermometer. Blue light ma
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 EAL domain [H]
Homologues:
Organism=Escherichia coli, GI1787410, Length=229, Percent_Identity=33.1877729257642, Blast_Score=127, Evalue=7e-31, Organism=Escherichia coli, GI87081980, Length=122, Percent_Identity=38.5245901639344, Blast_Score=105, Evalue=5e-24, Organism=Escherichia coli, GI1790496, Length=225, Percent_Identity=31.5555555555556, Blast_Score=101, Evalue=7e-23, Organism=Escherichia coli, GI87081845, Length=228, Percent_Identity=30.2631578947368, Blast_Score=88, Evalue=8e-19, Organism=Escherichia coli, GI87082096, Length=152, Percent_Identity=31.5789473684211, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI1787541, Length=167, Percent_Identity=32.9341317365269, Blast_Score=86, Evalue=4e-18, Organism=Escherichia coli, GI226510982, Length=234, Percent_Identity=32.0512820512821, Blast_Score=85, Evalue=6e-18, Organism=Escherichia coli, GI87081921, Length=238, Percent_Identity=27.3109243697479, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI1788502, Length=232, Percent_Identity=28.448275862069, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI1788849, Length=154, Percent_Identity=29.8701298701299, Blast_Score=77, Evalue=2e-15, Organism=Escherichia coli, GI87081743, Length=241, Percent_Identity=26.1410788381743, Blast_Score=75, Evalue=6e-15, Organism=Escherichia coli, GI1787055, Length=240, Percent_Identity=27.9166666666667, Blast_Score=75, Evalue=6e-15, Organism=Escherichia coli, GI1786507, Length=100, Percent_Identity=34, Blast_Score=74, Evalue=1e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001792 - InterPro: IPR007024 - InterPro: IPR001633 [H]
Pfam domain/function: PF04940 BLUF; PF00563 EAL [H]
EC number: NA
Molecular weight: Translated: 34923; Mature: 34923
Theoretical pI: Translated: 7.15; Mature: 7.15
Prosite motif: PS50883 EAL
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLRPRRAHGRVAALSFLLATSGNAPLTSMHAPAPSAPACSACRNGAAELDFDFTMAFQPI CCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCHHHHHHHH VDLRHGGSVFAYEALVRGTDGSPAASVLARVNDGNRYAFDQACRVRAVELAARLGIDCRL HHHCCCCCEEEEHHHHCCCCCCHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHCCCCEEE SINFLPNAVYQPEACIRVTLEAARRCGFPVERIIFEVAEHENAHDREHLNRILRAYRRQG EEEECCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC LRTAIDDFGAGYAGLGLLADFQPDMLKIDMALVRGIGADPVRQAIARGVVSMGEALGIAV HHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH IAEGVETEDELRPLRAMGVHLYQGYLFARPALEALPDVQWPQGAGFGTGPGDAAEALPGG HCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCCCCCCCCCCCCCCHHHHCCCC AGGTGAPPAALRAMPGARARGGAGMSLGFGPG CCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MLRPRRAHGRVAALSFLLATSGNAPLTSMHAPAPSAPACSACRNGAAELDFDFTMAFQPI CCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCHHHHHHHH VDLRHGGSVFAYEALVRGTDGSPAASVLARVNDGNRYAFDQACRVRAVELAARLGIDCRL HHHCCCCCEEEEHHHHCCCCCCHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHCCCCEEE SINFLPNAVYQPEACIRVTLEAARRCGFPVERIIFEVAEHENAHDREHLNRILRAYRRQG EEEECCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC LRTAIDDFGAGYAGLGLLADFQPDMLKIDMALVRGIGADPVRQAIARGVVSMGEALGIAV HHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH IAEGVETEDELRPLRAMGVHLYQGYLFARPALEALPDVQWPQGAGFGTGPGDAAEALPGG HCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCCCCCCCCCCCCCCHHHHCCCC AGGTGAPPAALRAMPGARARGGAGMSLGFGPG CCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8905232; 9278503 [H]