Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
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Accession | NC_008752 |
Length | 5,352,772 |
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The map label for this gene is bepF [H]
Identifier: 120610049
GI number: 120610049
Start: 1489523
End: 1490779
Strand: Direct
Name: bepF [H]
Synonym: Aave_1362
Alternate gene names: 120610049
Gene position: 1489523-1490779 (Clockwise)
Preceding gene: 120610048
Following gene: 120610050
Centisome position: 27.83
GC content: 74.46
Gene sequence:
>1257_bases ATGCCGTCATCCCAACCCGTTTCCCTCTTCTCGCCCGCGCGCCGCTGGTGGACCGCCGCCGGCGCCGCAGCCGCCATCGC GGCCGGCGGCGGAGCCCTGTTCGGGCTGTCCGCCTCGCACGCCGAGGCGCCGGCCGCCGACGCCGCGCCCCCGGCCGTGC CGGTGTCCGTCGCGGCCGTGGTGCAGCAGGACGTCGCGCTGTGGGACGAGTTCTCCGGCCGGCTGGAGGCCGTGCAGCGC GTGGACATCCGCCCGCGCGTGGCCGGCGCCGTGCAGGCCGTGCACTTCCGCGAAGGCGCGCTGGTGAAGCAGGGCGACCT GCTCTTCACCGTGGACCCCGCGCCCTACGCCGCGGAGGTGGACCGGGCCGACGCCCAGGTGGTGGCCGCCCAGGCGCGCC TGACCTATACCCGCAGCGAAATGGAGCGCGCCACGCGCCTGTGGGAAGAGCACGCCATCGCCCAGCGCGAGCGCGACGAG CGCGTGAATGCGCAGCGCGAAGCAGAGGCCAACCTGCGCGCCGCCCAGGCCGCGCTGCAGACGGCCCGGCTGAACCTGGG CTACACCCAGGTGCGCGCGCCGGTCGCGGGCCGCGTGGGCCGCATCGAGGTCACCGTGGGCAACCTGGTGGGTTCCGGGG CCGGTGCGCCGGTGCTGACCACGCTGGTGTCGGTGAGCCCGATCTACGCGAGCTTCGATACCGACGAGCAGATCGTGGCA CGCGCGCTGGAGGGCCTGCGCTCCGGCCAGAGCGCCCGCGCCCTCATCGAGCGCATTCCCGTGCAGATGGGCACGGGCAC GGCCGGCGGCACGCCGTATGCGGGCCATCTGCAGCTCATCGACAACCAGGTGGATGCGAGGAGCGGCACCGTGCGCGTGC GCGCCGTTTTCGACAACGCCGACGGCGCGCTCATGCCGGGCCAGTTCGCCCGCATCCGCGTGGGCCGGGCGAAGAGCACC CCGGCCGTGCTGATCAACGAGCGTGCCGTGGGCACGGACCAGAGCAAGAAGTTCGTGATGGTGGTGGGCGAGGGCAACAA GGCCGAATACCGCGAGGTGCAGCTGGGCGCGCCGGTCGATGGCCTGCGCGTCGTCACCTCGGGCCTGAAGGCGGGCGAGC GCATCGTCGTCAACGGCCTGCAGCGCGTGCGCCCCGGCGCCGTGGTCGCACCGCAGGACGTGCCCATGACCGCCAAGTCC GAACTGGGCGGCGAGGGCGCGCAGGCGCGTGCCGCCGCCCGCCAGCCCGCAGCCTGA
Upstream 100 bases:
>100_bases CCGGACCGCGGGCCGGAGGGGGAAGGCTTTGCCTGGCCGGTGCCGGCCCCGCTTTTTTGCTTGCGATACCACCGTTTTCA GACATACCGAAGGATCTGCC
Downstream 100 bases:
>100_bases GCGCCGGGCTTCAGAGAGCAGAGAACGACACCATGAACCTCTCCCGTTTCTTCATCGACCGCCCCATCTTCGCGGGGGTG CTGTCGGTGCTCATCTTCCT
Product: RND family efflux transporter MFP subunit
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 418; Mature: 417
Protein sequence:
>418_residues MPSSQPVSLFSPARRWWTAAGAAAAIAAGGGALFGLSASHAEAPAADAAPPAVPVSVAAVVQQDVALWDEFSGRLEAVQR VDIRPRVAGAVQAVHFREGALVKQGDLLFTVDPAPYAAEVDRADAQVVAAQARLTYTRSEMERATRLWEEHAIAQRERDE RVNAQREAEANLRAAQAALQTARLNLGYTQVRAPVAGRVGRIEVTVGNLVGSGAGAPVLTTLVSVSPIYASFDTDEQIVA RALEGLRSGQSARALIERIPVQMGTGTAGGTPYAGHLQLIDNQVDARSGTVRVRAVFDNADGALMPGQFARIRVGRAKST PAVLINERAVGTDQSKKFVMVVGEGNKAEYREVQLGAPVDGLRVVTSGLKAGERIVVNGLQRVRPGAVVAPQDVPMTAKS ELGGEGAQARAAARQPAA
Sequences:
>Translated_418_residues MPSSQPVSLFSPARRWWTAAGAAAAIAAGGGALFGLSASHAEAPAADAAPPAVPVSVAAVVQQDVALWDEFSGRLEAVQR VDIRPRVAGAVQAVHFREGALVKQGDLLFTVDPAPYAAEVDRADAQVVAAQARLTYTRSEMERATRLWEEHAIAQRERDE RVNAQREAEANLRAAQAALQTARLNLGYTQVRAPVAGRVGRIEVTVGNLVGSGAGAPVLTTLVSVSPIYASFDTDEQIVA RALEGLRSGQSARALIERIPVQMGTGTAGGTPYAGHLQLIDNQVDARSGTVRVRAVFDNADGALMPGQFARIRVGRAKST PAVLINERAVGTDQSKKFVMVVGEGNKAEYREVQLGAPVDGLRVVTSGLKAGERIVVNGLQRVRPGAVVAPQDVPMTAKS ELGGEGAQARAAARQPAA >Mature_417_residues PSSQPVSLFSPARRWWTAAGAAAAIAAGGGALFGLSASHAEAPAADAAPPAVPVSVAAVVQQDVALWDEFSGRLEAVQRV DIRPRVAGAVQAVHFREGALVKQGDLLFTVDPAPYAAEVDRADAQVVAAQARLTYTRSEMERATRLWEEHAIAQRERDER VNAQREAEANLRAAQAALQTARLNLGYTQVRAPVAGRVGRIEVTVGNLVGSGAGAPVLTTLVSVSPIYASFDTDEQIVAR ALEGLRSGQSARALIERIPVQMGTGTAGGTPYAGHLQLIDNQVDARSGTVRVRAVFDNADGALMPGQFARIRVGRAKSTP AVLINERAVGTDQSKKFVMVVGEGNKAEYREVQLGAPVDGLRVVTSGLKAGERIVVNGLQRVRPGAVVAPQDVPMTAKSE LGGEGAQARAAARQPAA
Specific function: May contribute to resistance to some drugs, such as deoxycholate, sodium dodecyl sulfate and nalidixic acid, in the absence of BepD and BepE [H]
COG id: COG0845
COG function: function code M; Membrane-fusion protein
Gene ontology:
Cell location: Periplasm (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family [H]
Homologues:
Organism=Escherichia coli, GI1789929, Length=346, Percent_Identity=31.7919075144509, Blast_Score=166, Evalue=3e-42, Organism=Escherichia coli, GI1786668, Length=341, Percent_Identity=33.4310850439883, Blast_Score=164, Evalue=9e-42, Organism=Escherichia coli, GI87082036, Length=339, Percent_Identity=31.2684365781711, Blast_Score=157, Evalue=9e-40, Organism=Escherichia coli, GI1789665, Length=347, Percent_Identity=31.9884726224784, Blast_Score=155, Evalue=5e-39, Organism=Escherichia coli, GI87081796, Length=334, Percent_Identity=25.748502994012, Blast_Score=77, Evalue=2e-15, Organism=Escherichia coli, GI87081951, Length=250, Percent_Identity=26.4, Blast_Score=76, Evalue=5e-15, Organism=Escherichia coli, GI1789637, Length=172, Percent_Identity=31.9767441860465, Blast_Score=65, Evalue=8e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006143 [H]
Pfam domain/function: PF00529 HlyD [H]
EC number: NA
Molecular weight: Translated: 43786; Mature: 43655
Theoretical pI: Translated: 9.87; Mature: 9.87
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPSSQPVSLFSPARRWWTAAGAAAAIAAGGGALFGLSASHAEAPAADAAPPAVPVSVAAV CCCCCCCHHHHHHHHHHHHCCHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHH VQQDVALWDEFSGRLEAVQRVDIRPRVAGAVQAVHFREGALVKQGDLLFTVDPAPYAAEV HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHEEECCCCEEECCCEEEEECCCCCHHHC DRADAQVVAAQARLTYTRSEMERATRLWEEHAIAQRERDERVNAQREAEANLRAAQAALQ CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH TARLNLGYTQVRAPVAGRVGRIEVTVGNLVGSGAGAPVLTTLVSVSPIYASFDTDEQIVA HHHCCCCHHHHCCCCCCCCCEEEEEECCEECCCCCCHHHHHHHHHCCEEECCCCCHHHHH RALEGLRSGQSARALIERIPVQMGTGTAGGTPYAGHLQLIDNQVDARSGTVRVRAVFDNA HHHHHHHCCHHHHHHHHHCCCEECCCCCCCCCCCCEEEEECCCCCCCCCEEEEEEEEECC DGALMPGQFARIRVGRAKSTPAVLINERAVGTDQSKKFVMVVGEGNKAEYREVQLGAPVD CCCCCCCCEEEEEECCCCCCCEEEEECCCCCCCCCCEEEEEEECCCCCCEEEEECCCCCC GLRVVTSGLKAGERIVVNGLQRVRPGAVVAPQDVPMTAKSELGGEGAQARAAARQPAA HHHHHHHHHCCCCCHHHHHHHHCCCCCEECCCCCCCCHHHHCCCCCHHHHHHHCCCCC >Mature Secondary Structure PSSQPVSLFSPARRWWTAAGAAAAIAAGGGALFGLSASHAEAPAADAAPPAVPVSVAAV CCCCCCHHHHHHHHHHHHCCHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHH VQQDVALWDEFSGRLEAVQRVDIRPRVAGAVQAVHFREGALVKQGDLLFTVDPAPYAAEV HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHEEECCCCEEECCCEEEEECCCCCHHHC DRADAQVVAAQARLTYTRSEMERATRLWEEHAIAQRERDERVNAQREAEANLRAAQAALQ CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH TARLNLGYTQVRAPVAGRVGRIEVTVGNLVGSGAGAPVLTTLVSVSPIYASFDTDEQIVA HHHCCCCHHHHCCCCCCCCCEEEEEECCEECCCCCCHHHHHHHHHCCEEECCCCCHHHHH RALEGLRSGQSARALIERIPVQMGTGTAGGTPYAGHLQLIDNQVDARSGTVRVRAVFDNA HHHHHHHCCHHHHHHHHHCCCEECCCCCCCCCCCCEEEEECCCCCCCCCEEEEEEEEECC DGALMPGQFARIRVGRAKSTPAVLINERAVGTDQSKKFVMVVGEGNKAEYREVQLGAPVD CCCCCCCCEEEEEECCCCCCCEEEEECCCCCCCCCCEEEEEEECCCCCCEEEEECCCCCC GLRVVTSGLKAGERIVVNGLQRVRPGAVVAPQDVPMTAKSELGGEGAQARAAARQPAA HHHHHHHHHCCCCCHHHHHHHHCCCCCEECCCCCCCCHHHHCCCCCHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12271122 [H]