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The map label for this gene is yhjC [H]

Identifier: 120610047

GI number: 120610047

Start: 1487368

End: 1488279

Strand: Reverse

Name: yhjC [H]

Synonym: Aave_1360

Alternate gene names: 120610047

Gene position: 1488279-1487368 (Counterclockwise)

Preceding gene: 120610054

Following gene: 120610046

Centisome position: 27.8

GC content: 69.74

Gene sequence:

>912_bases
ATGGACCAGATCCAGGCCATGCGCATCTACGCGCGGGTGGTGGAAGCCGGCACGTTCACGCGCGCCGCGGACTCCCTGCA
ACTGCCCAAAGCCACCGTCACCAAGCATATCCAGGCGCTGGAAGCGCGCCTGCGCGTGCGGCTGCTCAACCGCACCACGC
GGCGGGTGACCGTCACGCCCGACGGAGCGGCCTACTACGACCGGGCCGTGCGCCTGCTGGCCGACTTCGACGACATCGAG
GCGAGCATGACCCACGCGCGTGCCACGCCCAGCGGCCGCCTCCGCGTGGACGTCGGCACCGCCATGGCGAGGCTGCTCAT
CATTCCCCACCTGGAGGAATTCCACGCGCGCTATCCCGACATCCAGCTCGACCTGGGCGTGAGCGACCGCATCGTGGACC
TGATCGGCGACAACGTGGACTGCGTGATCCGCGGCGGCGAACTCACCGACCAGTCGCTGGTGGCGCGCCGCATCGGTCTG
CTGGAGTTCATCACCGTGGCCTCGCCCGCGTATCTGGAACGCCACGGCACGCCGGCCCAGCCGCTGGACCTCGAGAACGG
ACACCGCAGCGTCATCTATTTTTCGCCGCGCACCTCGCGCCGCTATCCGCTGGAGTTCCACCGTGACGGCGAGGTGATCG
AGATCGGCGGCCCCTCGCAGTTGGCGGTGAACGAAAGCAATGCCTACCTGGCCGCGCTGCTCGCCGGCCGCGGCGTGGGG
CAGGTGACCACCCTGCAGGCGCAGGGCCACCTGGAGCGGGGGGACCTGGTGAGGCTGCTGCCCGAGTGGTCGCATCCGCT
GCTGCCCGTCTATGTGGTGTATCCGCCCAACCGCCACCTGAGCGCCCGCGTGCGCGCCTTCGTGGACTGGGCCGCCGAAC
TGTTCGCGCGGGAGCGGTACCTGCAGGGCTGA

Upstream 100 bases:

>100_bases
GCCGATGCGGGCCGCACTGTTTCCAAAGTCCGAACAATCGGGCACCGCGGCGCGTGTGAGAATTCGCCGGCCCGAGAAGA
GGCACCGAGGAAGGAACGCC

Downstream 100 bases:

>100_bases
ACCCGCGATCGCAGGCCAGCCCGATATGCTCGGCGCCATGACCGCAGACTCCCCCGACCTCCCCGGCTCCCCCGGCCGCC
CGTCCTCGCCTCCGGAGGCG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 303; Mature: 303

Protein sequence:

>303_residues
MDQIQAMRIYARVVEAGTFTRAADSLQLPKATVTKHIQALEARLRVRLLNRTTRRVTVTPDGAAYYDRAVRLLADFDDIE
ASMTHARATPSGRLRVDVGTAMARLLIIPHLEEFHARYPDIQLDLGVSDRIVDLIGDNVDCVIRGGELTDQSLVARRIGL
LEFITVASPAYLERHGTPAQPLDLENGHRSVIYFSPRTSRRYPLEFHRDGEVIEIGGPSQLAVNESNAYLAALLAGRGVG
QVTTLQAQGHLERGDLVRLLPEWSHPLLPVYVVYPPNRHLSARVRAFVDWAAELFARERYLQG

Sequences:

>Translated_303_residues
MDQIQAMRIYARVVEAGTFTRAADSLQLPKATVTKHIQALEARLRVRLLNRTTRRVTVTPDGAAYYDRAVRLLADFDDIE
ASMTHARATPSGRLRVDVGTAMARLLIIPHLEEFHARYPDIQLDLGVSDRIVDLIGDNVDCVIRGGELTDQSLVARRIGL
LEFITVASPAYLERHGTPAQPLDLENGHRSVIYFSPRTSRRYPLEFHRDGEVIEIGGPSQLAVNESNAYLAALLAGRGVG
QVTTLQAQGHLERGDLVRLLPEWSHPLLPVYVVYPPNRHLSARVRAFVDWAAELFARERYLQG
>Mature_303_residues
MDQIQAMRIYARVVEAGTFTRAADSLQLPKATVTKHIQALEARLRVRLLNRTTRRVTVTPDGAAYYDRAVRLLADFDDIE
ASMTHARATPSGRLRVDVGTAMARLLIIPHLEEFHARYPDIQLDLGVSDRIVDLIGDNVDCVIRGGELTDQSLVARRIGL
LEFITVASPAYLERHGTPAQPLDLENGHRSVIYFSPRTSRRYPLEFHRDGEVIEIGGPSQLAVNESNAYLAALLAGRGVG
QVTTLQAQGHLERGDLVRLLPEWSHPLLPVYVVYPPNRHLSARVRAFVDWAAELFARERYLQG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=298, Percent_Identity=38.9261744966443, Blast_Score=206, Evalue=2e-54,
Organism=Escherichia coli, GI1786401, Length=290, Percent_Identity=33.1034482758621, Blast_Score=163, Evalue=1e-41,
Organism=Escherichia coli, GI1789639, Length=295, Percent_Identity=29.8305084745763, Blast_Score=149, Evalue=3e-37,
Organism=Escherichia coli, GI1787128, Length=278, Percent_Identity=31.6546762589928, Blast_Score=145, Evalue=4e-36,
Organism=Escherichia coli, GI87081978, Length=290, Percent_Identity=31.3793103448276, Blast_Score=127, Evalue=1e-30,
Organism=Escherichia coli, GI1789440, Length=286, Percent_Identity=27.2727272727273, Blast_Score=115, Evalue=4e-27,
Organism=Escherichia coli, GI1787589, Length=290, Percent_Identity=26.551724137931, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI1789173, Length=292, Percent_Identity=24.6575342465753, Blast_Score=75, Evalue=8e-15,
Organism=Escherichia coli, GI1786448, Length=291, Percent_Identity=23.0240549828179, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI87082132, Length=289, Percent_Identity=24.9134948096886, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33886; Mature: 33886

Theoretical pI: Translated: 7.87; Mature: 7.87

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDQIQAMRIYARVVEAGTFTRAADSLQLPKATVTKHIQALEARLRVRLLNRTTRRVTVTP
CCHHHHHHHHHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECC
DGAAYYDRAVRLLADFDDIEASMTHARATPSGRLRVDVGTAMARLLIIPHLEEFHARYPD
CCHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHCCCHHHHHCCCCC
IQLDLGVSDRIVDLIGDNVDCVIRGGELTDQSLVARRIGLLEFITVASPAYLERHGTPAQ
EEEECCCCHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCC
PLDLENGHRSVIYFSPRTSRRYPLEFHRDGEVIEIGGPSQLAVNESNAYLAALLAGRGVG
CCCCCCCCEEEEEECCCCCCCCCEEECCCCCEEEECCCCEEEEECCCCEEEEEHHCCCCC
QVTTLQAQGHLERGDLVRLLPEWSHPLLPVYVVYPPNRHLSARVRAFVDWAAELFARERY
CEEEEEECCCCCCCCEEEECCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
LQG
CCC
>Mature Secondary Structure
MDQIQAMRIYARVVEAGTFTRAADSLQLPKATVTKHIQALEARLRVRLLNRTTRRVTVTP
CCHHHHHHHHHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECC
DGAAYYDRAVRLLADFDDIEASMTHARATPSGRLRVDVGTAMARLLIIPHLEEFHARYPD
CCHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHCCCHHHHHCCCCC
IQLDLGVSDRIVDLIGDNVDCVIRGGELTDQSLVARRIGLLEFITVASPAYLERHGTPAQ
EEEECCCCHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCC
PLDLENGHRSVIYFSPRTSRRYPLEFHRDGEVIEIGGPSQLAVNESNAYLAALLAGRGVG
CCCCCCCCEEEEEECCCCCCCCCEEECCCCCEEEECCCCEEEEECCCCEEEEEHHCCCCC
QVTTLQAQGHLERGDLVRLLPEWSHPLLPVYVVYPPNRHLSARVRAFVDWAAELFARERY
CEEEEEECCCCCCCCEEEECCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
LQG
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]