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The map label for this gene is xerD [H]

Identifier: 120610000

GI number: 120610000

Start: 1440178

End: 1441107

Strand: Direct

Name: xerD [H]

Synonym: Aave_1313

Alternate gene names: 120610000

Gene position: 1440178-1441107 (Clockwise)

Preceding gene: 120609999

Following gene: 120610001

Centisome position: 26.91

GC content: 69.03

Gene sequence:

>930_bases
GTGTTAACTTCGCGCCCCATGACCCTTTCGCCCGGCAGTCAGGCTGCCATCGACGCGTTCGTTGACACCCTCTGGCTCGA
AGACGGCCTCTCGCGCAATACGCTGGCGGCCTACCGCCGCGACCTCGCGCTCTATGCGCAATGGCTCGGGGAGCATGTGC
CCGATACCGCGGGCATGCTCGACGCCACAATGGAACACCACCTGCAGGCCTATTTCGCGGCGCGCCACGCCCAGACGCGC
GCCACGTCGGCCAACCGCCGGCTTACGGTGCTGCGGCGGTATTTCCAGTGGGCCCTGCGGGAGCGCCGCATCGCCATCGA
TCCTACCGTGCGCCTGCAGGCGGCGCGGCAGCCGCTGCGCGTGCCCAAGACCCTCTCGGCCGCGCAGGTGGAAGCGCTCC
TCCAGTCCCCCGACACGTCCACGGCCCTGGGCCTGCGCGACCGCGCGATGCTGGAGCTCATGTACGCCAGCGGCCTGCGC
GTGACCGAACTCGTCACCTTGAAGACCTACCACGCCGGCCTGGCCGAGGGCGTGCTGCGGGTGATGGGCAAGGGCAGCAA
GGAGCGCCTCGTGCCCTTCGGGGAAGTCGCTGCGCAATGGCTGCAGCGGTACCTGGACCATGCCCGGGCGGACATTCTGG
CAGGACAGCGGACCGACGACCTGTTCGTGACCCGGCGCGGCGCCGGCATGACGCGTGCCATGTTCTGGGTGGTCGTGAAA
AAGCATGCGCAATCGGCCGGGATCCACGTGCCCCTGTCGCCGCACACGCTGCGCCATGCCTTCGCCACGCACCTGCTCAA
CCACGGAGCGGACCTGCGGGTCGTGCAACTGCTGCTGGGCCATGCGGACATCTCCACCACGACGATCTACACCCATGTGG
CGCGGGAGCGGCTCAAGGCGCTGCATGCCCAGCACCACCCGAGGGGCTGA

Upstream 100 bases:

>100_bases
AGTTCGATGTTTACAAGGCGGTGGTGCAGAAGCAGAAGCTTTCGCTCGAGTGACCTGCCGCCCGGCCGTCCGGGCGGGCG
GCATCAGGATCCGGGGACGC

Downstream 100 bases:

>100_bases
AGGCCGGTCCGCGCCTGGCGGGCGCGCACAATCGCCGCTGCATTCCGCATCCTTTCCCGGGTTTTTCCCGTGTTTCCTGA
AACGGTGGTTCCGATGATCG

Product: tyrosine recombinase XerD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 309; Mature: 309

Protein sequence:

>309_residues
MLTSRPMTLSPGSQAAIDAFVDTLWLEDGLSRNTLAAYRRDLALYAQWLGEHVPDTAGMLDATMEHHLQAYFAARHAQTR
ATSANRRLTVLRRYFQWALRERRIAIDPTVRLQAARQPLRVPKTLSAAQVEALLQSPDTSTALGLRDRAMLELMYASGLR
VTELVTLKTYHAGLAEGVLRVMGKGSKERLVPFGEVAAQWLQRYLDHARADILAGQRTDDLFVTRRGAGMTRAMFWVVVK
KHAQSAGIHVPLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTTIYTHVARERLKALHAQHHPRG

Sequences:

>Translated_309_residues
MLTSRPMTLSPGSQAAIDAFVDTLWLEDGLSRNTLAAYRRDLALYAQWLGEHVPDTAGMLDATMEHHLQAYFAARHAQTR
ATSANRRLTVLRRYFQWALRERRIAIDPTVRLQAARQPLRVPKTLSAAQVEALLQSPDTSTALGLRDRAMLELMYASGLR
VTELVTLKTYHAGLAEGVLRVMGKGSKERLVPFGEVAAQWLQRYLDHARADILAGQRTDDLFVTRRGAGMTRAMFWVVVK
KHAQSAGIHVPLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTTIYTHVARERLKALHAQHHPRG
>Mature_309_residues
MLTSRPMTLSPGSQAAIDAFVDTLWLEDGLSRNTLAAYRRDLALYAQWLGEHVPDTAGMLDATMEHHLQAYFAARHAQTR
ATSANRRLTVLRRYFQWALRERRIAIDPTVRLQAARQPLRVPKTLSAAQVEALLQSPDTSTALGLRDRAMLELMYASGLR
VTELVTLKTYHAGLAEGVLRVMGKGSKERLVPFGEVAAQWLQRYLDHARADILAGQRTDDLFVTRRGAGMTRAMFWVVVK
KHAQSAGIHVPLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTTIYTHVARERLKALHAQHHPRG

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG4974

COG function: function code L; Site-specific recombinase XerD

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=298, Percent_Identity=54.0268456375839, Blast_Score=291, Evalue=3e-80,
Organism=Escherichia coli, GI1790244, Length=292, Percent_Identity=35.2739726027397, Blast_Score=166, Evalue=2e-42,
Organism=Escherichia coli, GI1790768, Length=174, Percent_Identity=32.183908045977, Blast_Score=83, Evalue=3e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011932 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 34555; Mature: 34555

Theoretical pI: Translated: 10.95; Mature: 10.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTSRPMTLSPGSQAAIDAFVDTLWLEDGLSRNTLAAYRRDLALYAQWLGEHVPDTAGML
CCCCCCCEECCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHH
DATMEHHLQAYFAARHAQTRATSANRRLTVLRRYFQWALRERRIAIDPTVRLQAARQPLR
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCEECCCHHHHHHHCCCCC
VPKTLSAAQVEALLQSPDTSTALGLRDRAMLELMYASGLRVTELVTLKTYHAGLAEGVLR
CCCHHHHHHHHHHHHCCCCCHHHCHHHHHHHHHHHHCCCCHHHHEEHHHHHHHHHHHHHH
VMGKGSKERLVPFGEVAAQWLQRYLDHARADILAGQRTDDLFVTRRGAGMTRAMFWVVVK
HHCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHH
KHAQSAGIHVPLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTTIYTHVARERLKA
HHHHHCCEECCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
LHAQHHPRG
HHHHCCCCC
>Mature Secondary Structure
MLTSRPMTLSPGSQAAIDAFVDTLWLEDGLSRNTLAAYRRDLALYAQWLGEHVPDTAGML
CCCCCCCEECCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHH
DATMEHHLQAYFAARHAQTRATSANRRLTVLRRYFQWALRERRIAIDPTVRLQAARQPLR
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCEECCCHHHHHHHCCCCC
VPKTLSAAQVEALLQSPDTSTALGLRDRAMLELMYASGLRVTELVTLKTYHAGLAEGVLR
CCCHHHHHHHHHHHHCCCCCHHHCHHHHHHHHHHHHCCCCHHHHEEHHHHHHHHHHHHHH
VMGKGSKERLVPFGEVAAQWLQRYLDHARADILAGQRTDDLFVTRRGAGMTRAMFWVVVK
HHCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHH
KHAQSAGIHVPLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTTIYTHVARERLKA
HHHHHCCEECCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
LHAQHHPRG
HHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11823852 [H]