Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
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Accession | NC_008752 |
Length | 5,352,772 |
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The map label for this gene is miaA
Identifier: 120609981
GI number: 120609981
Start: 1421317
End: 1422369
Strand: Reverse
Name: miaA
Synonym: Aave_1294
Alternate gene names: 120609981
Gene position: 1422369-1421317 (Counterclockwise)
Preceding gene: 120609982
Following gene: 120609980
Centisome position: 26.57
GC content: 74.36
Gene sequence:
>1053_bases ATGTCCACTCCCCCTTCCCTGCCGGCCACCGGTGTGCCGGCACCCCACCTGCCCCGCGGAGCGGCCGCTCCGGCGCTTCC TGCCTGCCTCGCGCTGGCAGGCCCCACCGCATCGGGCAAGACGGCCGGGGCGCTGGCCCTGGCCCGCGCGCTCGCGCCGC ACCGGCCCGTGGAAATCGTGAGCGTGGATTCGGCGCTGGTGTACCGCGGCATGGACATCGGCACGGCCAAGCCGACGGCC GCCGAGCAGGCGGCCGTGCCACACCACCTGATCGACATCCGCGATCCGCTGCAGCCCTACAGCGCGGCCGAATTCGTGGC CGACGCGCAGCGGCTCGTGCGCGAAATCCAGGCGCGTGGCGCCCTGCCGCTGCTGGTGGGGGGGACGATGCTGTACTTCA AGGCGCTGTGGGACGGTATCGACGACATGCCGCCGGCCGACGCCGCCGTGCGGGCCCGACTGGAAGCACAGGCCGCGGCC GAAGGCTGGCCGGCCCTGCACGCGGAACTGGCCCGCGTGGATCCGCAGACGGCGGCCCGGCTCGCGCCCGGTGACAGCCA GCGCATCCAGCGGGCGCTGGAGGTCTGGCACGTGTCCGGGCGACCGCTGTCGAGTTTCCACACCCGCTCCCGCGCGGCGG GCGAAGCGGCAGGCGCGGCACGCATGTCCATGCCGCTCTTCTCCCTCGAGCCGCAGGACCGCGCCTGGCTGCACGGTCGG ATCGCACAGCGCTTCGACGCCATGCTGGACGAGGGCTTCGTGGAGGAGGTCCGGCGGCTGCGCGCCCGCGGCGACCTGCA CCCGGACCTGCCCTCCATGCGGTGCGTCGGCTACCGGCAGGCCTGGGAGGCGCTGTACGAAGAAGCGCGCACCGGCCGGC TGCCGCTGGCGCAGTTGCGCGAACGCGGCATCGCGGCCACCCGGCAGCTCGCCAAGCGGCAGGTCACCTGGCTGCGCAGC ATGCCCTGGCGCCATGCGATCGCCTGCGACGCACCGGATGCCACGCAGCGGTGGGTGGCGGCCGCGCTGCATGCGCTCGG AGTTCCGGCATGA
Upstream 100 bases:
>100_bases GCCCTGGCAGGGCCAGGCGGACGAAGCCGTCCGCGCCGCCATGCCGGGCTGACCTGCCGGCCGCGGGCAGGCACCGGGCG CTGGTACGCTCCGGGGGATC
Downstream 100 bases:
>100_bases CACCGGACGCGCATGCCGTCCCGCCTGCCGCGGCGCCACTGCTGCAGGTCCGAGGCCTGGCCCGGCACTACGGCACGGAC ACGCCGGTCTTCCGCGATGT
Product: tRNA delta(2)-isopentenylpyrophosphate transferase
Products: NA
Alternate protein names: Dimethylallyl diphosphate:tRNA dimethylallyltransferase; DMAPP:tRNA dimethylallyltransferase; DMATase; Isopentenyl-diphosphate:tRNA isopentenyltransferase; IPP transferase; IPPT; IPTase
Number of amino acids: Translated: 350; Mature: 349
Protein sequence:
>350_residues MSTPPSLPATGVPAPHLPRGAAAPALPACLALAGPTASGKTAGALALARALAPHRPVEIVSVDSALVYRGMDIGTAKPTA AEQAAVPHHLIDIRDPLQPYSAAEFVADAQRLVREIQARGALPLLVGGTMLYFKALWDGIDDMPPADAAVRARLEAQAAA EGWPALHAELARVDPQTAARLAPGDSQRIQRALEVWHVSGRPLSSFHTRSRAAGEAAGAARMSMPLFSLEPQDRAWLHGR IAQRFDAMLDEGFVEEVRRLRARGDLHPDLPSMRCVGYRQAWEALYEEARTGRLPLAQLRERGIAATRQLAKRQVTWLRS MPWRHAIACDAPDATQRWVAAALHALGVPA
Sequences:
>Translated_350_residues MSTPPSLPATGVPAPHLPRGAAAPALPACLALAGPTASGKTAGALALARALAPHRPVEIVSVDSALVYRGMDIGTAKPTA AEQAAVPHHLIDIRDPLQPYSAAEFVADAQRLVREIQARGALPLLVGGTMLYFKALWDGIDDMPPADAAVRARLEAQAAA EGWPALHAELARVDPQTAARLAPGDSQRIQRALEVWHVSGRPLSSFHTRSRAAGEAAGAARMSMPLFSLEPQDRAWLHGR IAQRFDAMLDEGFVEEVRRLRARGDLHPDLPSMRCVGYRQAWEALYEEARTGRLPLAQLRERGIAATRQLAKRQVTWLRS MPWRHAIACDAPDATQRWVAAALHALGVPA >Mature_349_residues STPPSLPATGVPAPHLPRGAAAPALPACLALAGPTASGKTAGALALARALAPHRPVEIVSVDSALVYRGMDIGTAKPTAA EQAAVPHHLIDIRDPLQPYSAAEFVADAQRLVREIQARGALPLLVGGTMLYFKALWDGIDDMPPADAAVRARLEAQAAAE GWPALHAELARVDPQTAARLAPGDSQRIQRALEVWHVSGRPLSSFHTRSRAAGEAAGAARMSMPLFSLEPQDRAWLHGRI AQRFDAMLDEGFVEEVRRLRARGDLHPDLPSMRCVGYRQAWEALYEEARTGRLPLAQLRERGIAATRQLAKRQVTWLRSM PWRHAIACDAPDATQRWVAAALHALGVPA
Specific function: Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
COG id: COG0324
COG function: function code J; tRNA delta(2)-isopentenylpyrophosphate transferase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the IPP transferase family
Homologues:
Organism=Homo sapiens, GI31581534, Length=326, Percent_Identity=30.9815950920245, Blast_Score=137, Evalue=1e-32, Organism=Escherichia coli, GI1790613, Length=322, Percent_Identity=50.9316770186335, Blast_Score=296, Evalue=1e-81, Organism=Caenorhabditis elegans, GI25144712, Length=269, Percent_Identity=24.5353159851301, Blast_Score=90, Evalue=2e-18, Organism=Saccharomyces cerevisiae, GI6324848, Length=306, Percent_Identity=24.8366013071895, Blast_Score=120, Evalue=3e-28, Organism=Drosophila melanogaster, GI24649830, Length=338, Percent_Identity=28.1065088757396, Blast_Score=112, Evalue=3e-25,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): MIAA_ACIAC (A1TLP7)
Other databases:
- EMBL: CP000512 - RefSeq: YP_969659.1 - ProteinModelPortal: A1TLP7 - SMR: A1TLP7 - STRING: A1TLP7 - GeneID: 4669640 - GenomeReviews: CP000512_GR - KEGG: aav:Aave_1294 - NMPDR: fig|397945.5.peg.1137 - eggNOG: COG0324 - HOGENOM: HBG559459 - OMA: VNADSMQ - PhylomeDB: A1TLP7 - ProtClustDB: CLSK963016 - BioCyc: AAVE397945:AAVE_1294-MONOMER - HAMAP: MF_00185 - InterPro: IPR002627 - InterPro: IPR018022 - PANTHER: PTHR11088 - TIGRFAMs: TIGR00174
Pfam domain/function: PF01715 IPPT
EC number: =2.5.1.75
Molecular weight: Translated: 37667; Mature: 37535
Theoretical pI: Translated: 9.55; Mature: 9.55
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTPPSLPATGVPAPHLPRGAAAPALPACLALAGPTASGKTAGALALARALAPHRPVEIV CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCEEEE SVDSALVYRGMDIGTAKPTAAEQAAVPHHLIDIRDPLQPYSAAEFVADAQRLVREIQARG EECHHHHHCCCCCCCCCCCCHHHHCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCC ALPLLVGGTMLYFKALWDGIDDMPPADAAVRARLEAQAAAEGWPALHAELARVDPQTAAR CCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHH LAPGDSQRIQRALEVWHVSGRPLSSFHTRSRAAGEAAGAARMSMPLFSLEPQDRAWLHGR CCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCHHHHCCCCCCCCCCHHHHHHHH IAQRFDAMLDEGFVEEVRRLRARGDLHPDLPSMRCVGYRQAWEALYEEARTGRLPLAQLR HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHH ERGIAATRQLAKRQVTWLRSMPWRHAIACDAPDATQRWVAAALHALGVPA HCCHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHCCCC >Mature Secondary Structure STPPSLPATGVPAPHLPRGAAAPALPACLALAGPTASGKTAGALALARALAPHRPVEIV CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCEEEE SVDSALVYRGMDIGTAKPTAAEQAAVPHHLIDIRDPLQPYSAAEFVADAQRLVREIQARG EECHHHHHCCCCCCCCCCCCHHHHCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCC ALPLLVGGTMLYFKALWDGIDDMPPADAAVRARLEAQAAAEGWPALHAELARVDPQTAAR CCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHH LAPGDSQRIQRALEVWHVSGRPLSSFHTRSRAAGEAAGAARMSMPLFSLEPQDRAWLHGR CCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCHHHHCCCCCCCCCCHHHHHHHH IAQRFDAMLDEGFVEEVRRLRARGDLHPDLPSMRCVGYRQAWEALYEEARTGRLPLAQLR HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHH ERGIAATRQLAKRQVTWLRSMPWRHAIACDAPDATQRWVAAALHALGVPA HCCHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA