Definition Acidovorax citrulli AAC00-1 chromosome, complete genome.
Accession NC_008752
Length 5,352,772

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The map label for this gene is algU [H]

Identifier: 120609877

GI number: 120609877

Start: 1308897

End: 1309526

Strand: Direct

Name: algU [H]

Synonym: Aave_1189

Alternate gene names: 120609877

Gene position: 1308897-1309526 (Clockwise)

Preceding gene: 120609876

Following gene: 120609878

Centisome position: 24.45

GC content: 63.33

Gene sequence:

>630_bases
ATGAACGCTTCCCTGCCCCCGCCTTCCCCTGCCGACAGCGACCTCCAGCTCGTGGAGCGCACCGTGTCCGGCGACCAGCG
GGCCTACGGGCTGCTGGTCGTGAAATACCAGCGCCGTATCGAGCGCCTCATCGGCCGCATGGTGCGCGACTCGGACCTGG
TGCAGGACATCGCCCAGGAAACCTTCCTGCGGGCCTACCGCGCACTGCACCAGTTCCGCGGAGAAGCGCAGTTCTACACC
TGGCTCTACCGCATCGCGGTCAATACGGCGAAGAAGGCCTTGATGGACATCAAGCGCAATCCCGTCATTTCCGAGAACGC
ATTGCGCGGCGGAGAGGACGAGGATGAAACTTCCCGTATCGGACACGAACTAACCAGCGACGAAACCCCGGAAACCGTGA
TGGCTGCGCAGGAGATTGCCGCGGCGGTCAACACGGCCATGGAAGCGCTGCCGGAGGATCTGCGCCAGGCGGTCACGCTG
CGCGAGATCGAAGGCCTGACCTATGAAGAAATCGCCGAGGTGATGCAGTGCCCCATAGGAACGGTGCGATCGAGGATATT
CCGTGCCCGGGAGGCGATTTCCGCCCGGGTGCGACCTTTGCTGGAAAAGCAGACAGGCAAGCGCTGGTGA

Upstream 100 bases:

>100_bases
GCTCCGCCGTGCGGTATATTCGCGCCCCAGACGGGAGCCCGCAGCCCAGGGGCCGACGATGCCCCCTGCTCATCGCCCAG
ATGCGTGAGCTTACGAATAC

Downstream 100 bases:

>100_bases
TGCAGGTGTGCCCGGGAGGCCGGGGCAGCGTGCCGGCCCAAGGACGATAGCAGGTGAGAAGCATGAAAGACGACCCGACA
ATGCGTGAGCAGCTTTCCGC

Product: RNA polymerase sigma factor RpoE

Products: NA

Alternate protein names: Sigma-30 [H]

Number of amino acids: Translated: 209; Mature: 209

Protein sequence:

>209_residues
MNASLPPPSPADSDLQLVERTVSGDQRAYGLLVVKYQRRIERLIGRMVRDSDLVQDIAQETFLRAYRALHQFRGEAQFYT
WLYRIAVNTAKKALMDIKRNPVISENALRGGEDEDETSRIGHELTSDETPETVMAAQEIAAAVNTAMEALPEDLRQAVTL
REIEGLTYEEIAEVMQCPIGTVRSRIFRAREAISARVRPLLEKQTGKRW

Sequences:

>Translated_209_residues
MNASLPPPSPADSDLQLVERTVSGDQRAYGLLVVKYQRRIERLIGRMVRDSDLVQDIAQETFLRAYRALHQFRGEAQFYT
WLYRIAVNTAKKALMDIKRNPVISENALRGGEDEDETSRIGHELTSDETPETVMAAQEIAAAVNTAMEALPEDLRQAVTL
REIEGLTYEEIAEVMQCPIGTVRSRIFRAREAISARVRPLLEKQTGKRW
>Mature_209_residues
MNASLPPPSPADSDLQLVERTVSGDQRAYGLLVVKYQRRIERLIGRMVRDSDLVQDIAQETFLRAYRALHQFRGEAQFYT
WLYRIAVNTAKKALMDIKRNPVISENALRGGEDEDETSRIGHELTSDETPETVMAAQEIAAAVNTAMEALPEDLRQAVTL
REIEGLTYEEIAEVMQCPIGTVRSRIFRAREAISARVRPLLEKQTGKRW

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor regulates genes such as algD, involved in alginate biosynthesis [H]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788926, Length=192, Percent_Identity=51.5625, Blast_Score=190, Evalue=6e-50,

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR014286
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 23715; Mature: 23715

Theoretical pI: Translated: 5.47; Mature: 5.47

Prosite motif: PS01063 SIGMA70_ECF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNASLPPPSPADSDLQLVERTVSGDQRAYGLLVVKYQRRIERLIGRMVRDSDLVQDIAQE
CCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TFLRAYRALHQFRGEAQFYTWLYRIAVNTAKKALMDIKRNPVISENALRGGEDEDETSRI
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCHHHHHHH
GHELTSDETPETVMAAQEIAAAVNTAMEALPEDLRQAVTLREIEGLTYEEIAEVMQCPIG
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHH
TVRSRIFRAREAISARVRPLLEKQTGKRW
HHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MNASLPPPSPADSDLQLVERTVSGDQRAYGLLVVKYQRRIERLIGRMVRDSDLVQDIAQE
CCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TFLRAYRALHQFRGEAQFYTWLYRIAVNTAKKALMDIKRNPVISENALRGGEDEDETSRI
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCHHHHHHH
GHELTSDETPETVMAAQEIAAAVNTAMEALPEDLRQAVTLREIEGLTYEEIAEVMQCPIG
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHH
TVRSRIFRAREAISARVRPLLEKQTGKRW
HHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8432708; 8378309; 7961421; 10984043; 7737518 [H]