Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
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Accession | NC_008752 |
Length | 5,352,772 |
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The map label for this gene is algU [H]
Identifier: 120609877
GI number: 120609877
Start: 1308897
End: 1309526
Strand: Direct
Name: algU [H]
Synonym: Aave_1189
Alternate gene names: 120609877
Gene position: 1308897-1309526 (Clockwise)
Preceding gene: 120609876
Following gene: 120609878
Centisome position: 24.45
GC content: 63.33
Gene sequence:
>630_bases ATGAACGCTTCCCTGCCCCCGCCTTCCCCTGCCGACAGCGACCTCCAGCTCGTGGAGCGCACCGTGTCCGGCGACCAGCG GGCCTACGGGCTGCTGGTCGTGAAATACCAGCGCCGTATCGAGCGCCTCATCGGCCGCATGGTGCGCGACTCGGACCTGG TGCAGGACATCGCCCAGGAAACCTTCCTGCGGGCCTACCGCGCACTGCACCAGTTCCGCGGAGAAGCGCAGTTCTACACC TGGCTCTACCGCATCGCGGTCAATACGGCGAAGAAGGCCTTGATGGACATCAAGCGCAATCCCGTCATTTCCGAGAACGC ATTGCGCGGCGGAGAGGACGAGGATGAAACTTCCCGTATCGGACACGAACTAACCAGCGACGAAACCCCGGAAACCGTGA TGGCTGCGCAGGAGATTGCCGCGGCGGTCAACACGGCCATGGAAGCGCTGCCGGAGGATCTGCGCCAGGCGGTCACGCTG CGCGAGATCGAAGGCCTGACCTATGAAGAAATCGCCGAGGTGATGCAGTGCCCCATAGGAACGGTGCGATCGAGGATATT CCGTGCCCGGGAGGCGATTTCCGCCCGGGTGCGACCTTTGCTGGAAAAGCAGACAGGCAAGCGCTGGTGA
Upstream 100 bases:
>100_bases GCTCCGCCGTGCGGTATATTCGCGCCCCAGACGGGAGCCCGCAGCCCAGGGGCCGACGATGCCCCCTGCTCATCGCCCAG ATGCGTGAGCTTACGAATAC
Downstream 100 bases:
>100_bases TGCAGGTGTGCCCGGGAGGCCGGGGCAGCGTGCCGGCCCAAGGACGATAGCAGGTGAGAAGCATGAAAGACGACCCGACA ATGCGTGAGCAGCTTTCCGC
Product: RNA polymerase sigma factor RpoE
Products: NA
Alternate protein names: Sigma-30 [H]
Number of amino acids: Translated: 209; Mature: 209
Protein sequence:
>209_residues MNASLPPPSPADSDLQLVERTVSGDQRAYGLLVVKYQRRIERLIGRMVRDSDLVQDIAQETFLRAYRALHQFRGEAQFYT WLYRIAVNTAKKALMDIKRNPVISENALRGGEDEDETSRIGHELTSDETPETVMAAQEIAAAVNTAMEALPEDLRQAVTL REIEGLTYEEIAEVMQCPIGTVRSRIFRAREAISARVRPLLEKQTGKRW
Sequences:
>Translated_209_residues MNASLPPPSPADSDLQLVERTVSGDQRAYGLLVVKYQRRIERLIGRMVRDSDLVQDIAQETFLRAYRALHQFRGEAQFYT WLYRIAVNTAKKALMDIKRNPVISENALRGGEDEDETSRIGHELTSDETPETVMAAQEIAAAVNTAMEALPEDLRQAVTL REIEGLTYEEIAEVMQCPIGTVRSRIFRAREAISARVRPLLEKQTGKRW >Mature_209_residues MNASLPPPSPADSDLQLVERTVSGDQRAYGLLVVKYQRRIERLIGRMVRDSDLVQDIAQETFLRAYRALHQFRGEAQFYT WLYRIAVNTAKKALMDIKRNPVISENALRGGEDEDETSRIGHELTSDETPETVMAAQEIAAAVNTAMEALPEDLRQAVTL REIEGLTYEEIAEVMQCPIGTVRSRIFRAREAISARVRPLLEKQTGKRW
Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor regulates genes such as algD, involved in alginate biosynthesis [H]
COG id: COG1595
COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]
Homologues:
Organism=Escherichia coli, GI1788926, Length=192, Percent_Identity=51.5625, Blast_Score=190, Evalue=6e-50,
Paralogues:
None
Copy number: <10 [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014284 - InterPro: IPR000838 - InterPro: IPR007627 - InterPro: IPR013249 - InterPro: IPR014286 - InterPro: IPR013325 - InterPro: IPR013324 [H]
Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]
EC number: NA
Molecular weight: Translated: 23715; Mature: 23715
Theoretical pI: Translated: 5.47; Mature: 5.47
Prosite motif: PS01063 SIGMA70_ECF
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNASLPPPSPADSDLQLVERTVSGDQRAYGLLVVKYQRRIERLIGRMVRDSDLVQDIAQE CCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TFLRAYRALHQFRGEAQFYTWLYRIAVNTAKKALMDIKRNPVISENALRGGEDEDETSRI HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCHHHHHHH GHELTSDETPETVMAAQEIAAAVNTAMEALPEDLRQAVTLREIEGLTYEEIAEVMQCPIG HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHH TVRSRIFRAREAISARVRPLLEKQTGKRW HHHHHHHHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure MNASLPPPSPADSDLQLVERTVSGDQRAYGLLVVKYQRRIERLIGRMVRDSDLVQDIAQE CCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TFLRAYRALHQFRGEAQFYTWLYRIAVNTAKKALMDIKRNPVISENALRGGEDEDETSRI HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCHHHHHHH GHELTSDETPETVMAAQEIAAAVNTAMEALPEDLRQAVTLREIEGLTYEEIAEVMQCPIG HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHH TVRSRIFRAREAISARVRPLLEKQTGKRW HHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8432708; 8378309; 7961421; 10984043; 7737518 [H]